zgc:174888 (LOC107549460,LOC107750007,LOC107598425,LOC107692550,LOC107673023,LOC107737913)


Basic Information

Item Value
gene id zgc:174888
gene name LOC107549460,LOC107750007,LOC107598425,LOC107692550,LOC107673023,LOC107737913
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13158802 ~ 13162784 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261898.1
tgcaGCAAGTCATCAATCCAGGTTAAATGAAAAATCTTGCGAAACGAGTGAGTGGGAGTGAATGCGTGCAGAGGAATCAATGTTACCCCAAGGGCTGCAAGATATTCCTTCCTGTCTACACAGGCTGATTGATGGCGATTGCCAGAATAACTTTTACTCACACATATAATCCATTTAATTATTCCAGATGGCAGCTTTGTGTTGTCATAGAAGATCTCTGTTTTGCGTTTGTGCTGAAACATGTATAAAGACGCGCTTGCTTATTACActtcaccattttttttttttaaatcacattgcTAATACAAATCTGTTTACGCCTCTtttcaatgcaatgcatttcaatGCGTTACGCACTAAGAACAATGTATCTTTGATGGAGTCTCCCATGTGACTGCATTTGAACCAACAACCGCAAACTGCCTGCTTTGTCTATCTAAATGACAGCATGGTTGAATCCTCCCCGGTTTATAGGTATCACATGCTTTACTAATGACTAATCTGGAATAGTGTGAATCATAAATGTGTGCCTGATGAAATATAACTTCCTTTCACTACCATCATGAAAGCTCAGAGGCTTAGTCATCATTCAGCTGATAAACTGTGGGATTGAGGGAGCAACAGACATTGAGACTAGATTCAGGAggagaaattaaaaacagactGCCAGAGTGCATGACTAAGACTAAGCCAGGGGAAGGCTGTGCATTGAGTACTAATAAAAAGAGGAGAAGAGGGGGAGTGCATGCTGTCTAATGAGGTAAAGGGGTGGGGAGCTTTAAAGAGAGCGGGGAGAGATTGAACCGCCAGGACTTTCACTTTCAGTGAGCAAGCTGCCTCCACACTGTTGACTCCTTAAGAAGTAGCCTACAACAGATCAAATGTCTCGCTCACGTGCTGGAATTAAAAGCTTCAAAGAAAACTGACTGAAAAGGAAGGAGGAAAGCTAGAGCAAACTAAAATCTGGATATACAGGAATATCTTTTTGTCCATCAGAGGTTTTTTCCATTAGAAGACTGGGAATTTCCAAGTGCCTGACTGGGATTAAGCAAGAGAGGGTCCAAATGGAGAGCAGCTGTGGGATCCAGGAGAAAGTGCAGCAGTGAGAGGAAGAAGAGACCTTGGTTAGTAGCTTCTCAAAGACGCAGCTGGGAAACCCACTCAGACCTAGATTCATCCATAACCTTCCTGCAGCTATCTGTCGTGCAAAACGACTTGGTTAAGAAGAACATGGGGAATATGGCCCACATTGGCCGGTAGAAGCATGTCACCAACAGTGCTGTTACTTCTATCGATTTTGACTGTTCAAGGAAGTGGGTGCGATGATTTTATGAAGACGACGATCCGAAATCTTCAAGACTCTATACGCAGCGAAGAAACGTCCGGATTCCCAGAAGTGTTTCCAAAGAACTACGTCGTGTCTCACTATTTCAACGACAGCGCGCTGTGCAATGAGCCGTGTTGTGTGTTCAGTGCTGCTGCGTTCCTGTCTAATTCCTGGATTCAGCTTCTCCAGCATCTCAGCAGAGTTCACCTCAAATACAGGTTCATCAGCGAGCTGATTCTCACACTGGACAAGATAGCAAAAGAGAAAATTCCAGATCGTCCCGATATCTCTGCTTTCCCATCTGTTCAGTCATCGCCTGAAGGTCTTCTCTCCTTCACTTCGTCCCTCTTCACCCGATGGCTCAGTCTGGACTGTGCTTTTCAAGAGCATCAATGCATCTTCCCCACACCTAGTGAAGAGGACCTAAAAAATATGCCATCAGAGGAGGAAAACAATGTGGAAAACCAGGAACCCGTGGATGAGCAGTGGCCTGGGATAGAAGGAGAGAAAGGTAAACGGCAGGTCAACCAGGGTCTGACTAACGGCTATAGTCGGTCACTTTTCTCAAGTTACTCTCACTGGACCTTTTATTTTCTATGGATAACATCAAGTCTGATCTGGTAAAGGGTGAGAAATCTGTTTTAAACATGCCACAAAACTTGCCCAAAAGGAGGCTTTACTTTGAACGGACAGCTATTGTAATTCACTGTTGCTTTATACTGATTAGCATTTGTATGAGATTTCAGAGAATTAGCTCTCTGGATGTGGCTCATGATTTCTAGATGCATGTTGGAGAAAAAGGATGTTCTGAAAGCAGACACATGGCCAATATGACGTTCATGTACAtgtatgatgtttttttctgcatcATGTCTTTGCACTGATTGTTTCTATCACTTATCCAGTTTTCTGTCATCTTATACAGTGAATTATGTGTCATCCGTGATAATTCAGGGTAAACCTGTTGACTGAATGTTTTAACATTGAATGTAGTGAAAAAGTAAAGCATACATGAAGCCAAAAGTCTCTGCTTATCGCTCGGTGTTCAAGAGGAAAAAACTACACTCATTTACTACAGTAAATCCAAGCcatattaaataattctgtGGCATAGGAACCAGCTTAATCAAGCTACTTTCTGAAAAAGACATTTGCAAAAGGGTTACATAAGTCATGTTTACAAGTATTGATGTCTTGTCTTAGAGAAGGTTACTACAAGCAATGTTTTACTCAAATGAATTTAACAATCTGTCTGTTTTTGGTATACATGTGTTGTCTGTTTTTAAGtgtagatttttatatataaataaaatcttgaaatcGG
>XM_043261899.1
tgcaGCAAGTCATCAATCCAGGTTAAATGAAAAATCTTGCGAAACGAGTGAGTGGGAGTGAATGCGTGCAGAGGAATCAATGTTACCCCAAGGGCTGCAAGATATTCCTTCCTGTCTACACAGGCTGATTGATGGCGATTGCCAGAATAACTTTTACTCACACATATAATCCATTTAATTATTCCAGATGGCAGCTTTGTGTTGTCATAGAAGATCTCTGTTTTGCGTTTGTGCTGAAACATGTATAAAGACGCGCTTGCTTATTACActtcaccattttttttttttaaatcacattgcTAATACAAATCTGTTTACGCCTCTtttcaatgcaatgcatttcaatGCGTTACGCACTAAGAACAATGTATCTTTGATGGAGTCTCCCATGTGACTGCATTTGAACCAACAACCGCAAACTGCCTGCTTTGTCTATCTAAATGACAGCATGGTTGAATCCTCCCCGGTTTATAGGTATCACATGCTTTACTAATGACTAATCTGGAATAGTGTGAATCATAAATGTGTGCCTGATGAAATATAACTTCCTTTCACTACCATCATGAAAGCTCAGAGGCTTAGTCATCATTCAGCTGATAAACTGTGGGATTGAGGGAGCAACAGACATTGAGACTAGATTCAGGAggagaaattaaaaacagactGCCAGAGTGCATGACTAAGACTAAGCCAGGGGAAGGCTGTGCATTGAGTACTAATAAAAAGAGGAGAAGAGGGGGAGTGCATGCTGTCTAATGAGGTAAAGGGGTGGGGAGCTTTAAAGAGAGCGGGGAGAGATTGAACCGCCAGGACTTTCACTTTCAGTGAGCAAGCTGCCTCCACACTGTTGACTCCTTAAGAAGTAGCCTACAACAGATCAAATGTCTCGCTCACGTGCTGGAATTAAAAGCTTCAAAGAAAACTGACTGAAAAGGAAGGAGGAAAGCTAGAGCAAACTAAAATCTGGATATACAGGAATATCTTTTTGTCCATCAGAGGTTTTTTCCATTAGAAGACTGGGAATTTCCAAGTGCCTGACTGGGATTAAGCAAGAGAGGGTCCAAATGGAGAGCAGCTGTGGGATCCAGGAGAAAGTGCAGCAGTGAGAGGAAGAAGAGACCTTGGTTAGTAGCTTCTCAAAGACGCAGCTGGGAAACCCACTCAGACCTAGATTCATCCATAACCTTCCTGCAGCTATCTGTCGTGCAAAACGACTTGGTTAAGAAGAACATGGGGAATATGGCCCACATTGGCCGGTAGAAGCATGTCACCAACAGTGCTGTTACTTCTATCGATTTTGACTGTTCAAGGAAGTGGGTGCGATGATTTTATGAAGACGACGATCCGAAATCTTCAAGACTCTATACGCAGCGAAGAAACGTCCGGATTCCCAGAAGTGTTTCCAAAGAACTACGTCGTGTCTCACTATTTCAACGACAGCGCGCTGTGCAATGAGCCGTGTTGTGTGTTCAGTGCTGCTGCGTTCCTGTCTAATTCCTGGATTCAGCTTCTCCAGCATCTCAGCAGAGTTCACCTCAAATACAGGTTCATCAGCGAGCTGATTCTCACACTGGACAAGATAGCAAAAGAGTCATCGCCTGAAGGTCTTCTCTCCTTCACTTCGTCCCTCTTCACCCGATGGCTCAGTCTGGACTGTGCTTTTCAAGAGCATCAATGCATCTTCCCCACACCTAGTGAAGAGGACCTAAAAAATATGCCATCAGAGGAGGAAAACAATGTGGAAAACCAGGAACCCGTGGATGAGCAGTGGCCTGGGATAGAAGGAGAGAAAGGTAAACGGCAGGTCAACCAGGGTCTGACTAACGGCTATAGTCGGTCACTTTTCTCAAGTTACTCTCACTGGACCTTTTATTTTCTATGGATAACATCAAGTCTGATCTGGTAAAGGGTGAGAAATCTGTTTTAAACATGCCACAAAACTTGCCCAAAAGGAGGCTTTACTTTGAACGGACAGCTATTGTAATTCACTGTTGCTTTATACTGATTAGCATTTGTATGAGATTTCAGAGAATTAGCTCTCTGGATGTGGCTCATGATTTCTAGATGCATGTTGGAGAAAAAGGATGTTCTGAAAGCAGACACATGGCCAATATGACGTTCATGTACAtgtatgatgtttttttctgcatcATGTCTTTGCACTGATTGTTTCTATCACTTATCCAGTTTTCTGTCATCTTATACAGTGAATTATGTGTCATCCGTGATAATTCAGGGTAAACCTGTTGACTGAATGTTTTAACATTGAATGTAGTGAAAAAGTAAAGCATACATGAAGCCAAAAGTCTCTGCTTATCGCTCGGTGTTCAAGAGGAAAAAACTACACTCATTTACTACAGTAAATCCAAGCcatattaaataattctgtGGCATAGGAACCAGCTTAATCAAGCTACTTTCTGAAAAAGACATTTGCAAAAGGGTTACATAAGTCATGTTTACAAGTATTGATGTCTTGTCTTAGAGAAGGTTACTACAAGCAATGTTTTACTCAAATGAATTTAACAATCTGTCTGTTTTTGGTATACATGTGTTGTCTGTTTTTAAGtgtagatttttatatataaataaaatcttgaaatcGG

Function

NR:

description
PREDICTED: uncharacterized protein LOC104960445 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261898.1 True 2651 mRNA 0.42 5 13158802 13162784
XM_043261899.1 False 2606 mRNA 0.41 5 13158802 13162784

Neighbor

gene id symbol gene type direction distance location
grwd1 grwd1,LOC107692548,LOC107549456,LOC107750005,LOC107737912,LOC107598422,LOC107673021 coding downstream 929 13152349 ~ 13157873 (-)
atg12 atg12,LOC107692547,LOC107673043 coding downstream 12388 13144049 ~ 13146414 (-)
si:ch211-149k23.9 si:ch211-149k23.9,LOC107673042,LOC107598426,LOC107549453,LOC107692544,LOC108437471,LOC102779492 coding downstream 14891 13136647 ~ 13143911 (-)
LOC122359945 NA coding downstream 32600 13124348 ~ 13126202 (-)
LOC122359944 NA coding downstream 34915 13120866 ~ 13123887 (-)
flcn flcn,LOC107549459,LOC107692552,LOC107750008,LOC107673020,LOC107598420 coding upstream 146 13162930 ~ 13170984 (-)
josd2 josd2,LOC107549461,LOC107750011,LOC107737925,LOC107598457,LOC107692554,LOC107672995 coding upstream 38598 13201382 ~ 13204597 (-)
pitpnc1b zgc:101640,LOC107692561,LOC107549471,LOC107737922,LOC107598395,LOC107672976,LOC107750023,LOC108437483 coding upstream 143244 13306028 ~ 13319763 (-)
cacng6b cacng6b,LOC107549474,LOC107692568,LOC107724866,LOC107744303,LOC107672978,LOC107598398 coding upstream 310691 13473475 ~ 13485710 (-)
u2af2a LOC107692567,LOC107672971,LOC107724853,LOC107598390 coding upstream 324567 13487351 ~ 13494251 (-)
G112229 NA non-coding downstream 132673 13024933 ~ 13026129 (-)
G111862 NA non-coding downstream 506396 12567205 ~ 12652406 (-)
G111860 NA non-coding downstream 546808 12557811 ~ 12611994 (-)
G111799 NA non-coding downstream 668682 12489782 ~ 12490120 (-)
G111809 NA non-coding downstream 671109 12486851 ~ 12487693 (-)
G112256 LOC107737914,LOC107549458,LOC107598419,LOC107673038,LOC107750018 non-coding upstream 25135 13187919 ~ 13200640 (-)
G112261 NA non-coding upstream 51146 13213930 ~ 13227818 (-)
G112260 NA non-coding upstream 54419 13217203 ~ 13249624 (-)
G112299 LOC107750016,LOC107549467,LOC107692576 non-coding upstream 126421 13289205 ~ 13292423 (-)
G112315 NA non-coding upstream 268360 13431144 ~ 13434295 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 780353 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 1291487 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 1747025 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 1771809 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 1872370 11269620 ~ 11286432 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 491276 13654060 ~ 13683909 (-)
G112478 NA other upstream 1071770 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 1335479 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 1419695 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 1736398 14899182 ~ 14904907 (-)

Expression


Co-expression Network