prpf3 (prpf3,LOC107677690,LOC107719195)


Basic Information

Item Value
gene id prpf3
gene name prpf3,LOC107677690,LOC107719195
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 10391834 ~ 10403036 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261955.1
ACGATTTCCGTTTCCGTTTCGCCGTTGGAAAACGTTCAGCGGACACCGTGGGAGTAGAGAAGTCTAGAAACAGTTCAGaataatttgtaaatttaaataactggtgtattatttttatcaacGAAATTTGGTGTGGCGGACGAAAAAAACGAGGATTAAATAGTAGCGTAAAAACTCTTTAGGCCGCTGGAAAACAGCCGAGTAAAGTGAGAGATTTTCCCCCAGAATGTCTCTGCCCAAACGTGAGGTTGATGAGCTGAGGCCATGGGTGGAACGTACAGTAAAGAAGGTCCTTGGTTTTTCTGAACCTACTGTGGTCACAGCAGCGTTGCATTGTGTAGGAAAAGGCCTggacaaaagaaaaactacagaCCAACTAAGGCCGTTTCTTGATGATTCAGCAAGCAGCTTTGTTGAGCGTCTGTTTGAAGCTCTTGAGGAAAGCAGGAACTCCCGTGGCAACAAAGGAGCAGGAGAGAAGAACCGCAAAAGAGAGCTAAAGGAAGTGTTTGGAGATGAGGTGGAAGGGGTGAAGGATGGAGGCAGTGTGGAATCTGTGGTAAAAAAGAAGAGGGTACCTCGCTTTGAGGAGGTGGAGGAACCACCCGTTTTACCTGGACCCCCTACAGAGAGTCCTGGCATGCTTACTAAAATGCAGATTAAGCAAATGATGGAAGCGGCTACGCGGCAGAttgaggagagaaagaaacagctAAGTCTTGTGGCTCCTGTCCCTGTCGTGCCGCCTAGATTGGTTCCCTCTCAGACAGACTCTAGTGCTCCACATCCCATCCTTCCAACAGTTGGTTCAACCCAATCCATCGCTCCCTCCCAAGCTGCTAACTTCATGAATGATGCTATAGAGAAAGCACGCAAGGCAGCAGAGCTGCAGGCCAAGATCCAGTCCACACTGGCTATGAAACCTGGAATTCTGGGTACTTTGGGAAACACAGGGCCACATAACCTGGTAGCCCTGGCTAACCTGCACGCCATGGGCATTGCACCACCAAAAGTGGAACCACGTGAAATCACAAAGCCAACGCCCCTCATTTTGGATGAGCTTGGACGAACTGTTGATGCCAGTGGGAAAGAAGTTGAGCTCACACATCGTATGCCCACTCTAAAAGcCAACATCAGAGCGGTGAAGAGGGAACAGTTTCGGCAGCAGTTAAAGGAAAAGCCCAGTGATGACCTGGAATCCACGTCTTACTTTGACTCACGTGTGGCCATCAACTCTGCACAGAGAGCCAAAAGAGGGTTTCGGTTCCATGAACAGGGACGCTTTGAGAAGATTGCCCAGCGCATACGAACAAAGGCTCAGCTAGAGAAACTACAGATGGAGATTGCTCAGGCTGCCAAGAAGACAGGCATACAGGCCTCCACTAAACTGGCTCTTATTGCCCCCAAGAAGGAATTGGGAGAGGGGGAGGTTCCTCACATAGAGTGGTGGGACTCCTACATTCTGCCTTCCCACATAGAACTatcTGCACATACACATTTTGATGAAGTGGAGATGCATGGAGTCACCAACCTAGTTGAACACCCAATTCAGATGGCCCCTCCAGTGGATACAGATAAGCCAGTGACTCTGGGTGTGTATCTGACCAAAAAGGAGCAGAAGAAATTGAGGAGACAAACTCGCAGAGAAGCCCAGAAAGAGTTGCAGGAAAAGGTCCGATTGGGTCTTATGCCACCACCTGAACCTAAAGTGCGGATCTCTAATCTGATGAGGGTATTGGGAACAGAGGCTGTGCAGGACCCCACTAAAGTGGAGGCTCATGTTAGAGCACAAATGGCAAAGAGGCAGAAAGCGCATGAGGAGGCAAATGCAGCACGTAAACttacagcagaacaaagaaaagagaagaaggTCAAGAAACTTAAAGAGGATTTGAGTCATGGGGTTCACATTGCAGTTTACAGAATCCGAAATCTGCATAATCCAGCCAAGAAATTTAAAGTGGAGGCCAATGCAAATCAGCTGTACCTCACTGGAACCGTGGTACTTCACAAAGACGTCAACATTGTAGTAGTGGAGGGAGGCCCCAAATCACAGAAGAAATTTAAACGACTTATGTTGAGTAGAATCAAATGGGATGAGCCAAATTCCAAGAGAGATGAGCCTCAAGATTCAGATGATGAGGGTTCcagaaagaataataaatgcacattggTTTGGGAGGGTACAGCCACAGAACGTAGTTACGGGGAGGTTAAGTTTAAACAGTGTCCAACAGAAAGTATGGCTagggaacattttaaaaagcatggcACTGAGCACTACTGGGACTTGGCTTTGAGTCAAAGTGTTCTGGAGACAACTGATGactgagaaacagacagagctCGAAGTAAAAGAAGAATAACAAAGAAACAGTGGAGCCTATGGCATgcgcacacatttttttttctttttaattctacaaaagagagagtgaaggaagtgaaatagacagacagagagaaatctGTATATGTAAATAGAGTTTGAGTGTGTAAGAGAATGATTGTTTTTGTACCTGTAACGCAAGTGTGCCAGGCTTAAGAACAACAGCTGGTTTAATGAGCTAGGATGTTAACCCTTATGTGTACTGCAGAATAAGAGTGGACTCTGGTTTTGTATCTCTTGTAACAGTTTTATAGTGTAGGCTGTGCGGTCTTTGATTGTAATTTTGATTTCTATCTTGGATCCATCTCGAGTCTTGCATCTTGTGCTCAACATTTTGATGCAGTCTTTTCAGTAAATAAGCCTCACTCTCAAAATAAGTTAATTCGCACTGTGTAGTTTGTTACTGAATGCACAAACGAGTATTGGTTTCTTTATTACACAAAACTGGTAATTCTAGTATGGCTAAAGAATGGATAAATCTTTATTTGGCTCAACTATAAATGTCCAACAGgaagttatttaaatgtaatgcccttttttttttctccaaaattaCATGTCATTCATCAAATGTGAAAGTGCAACTAACCAGATGCCATGATTAAAGCTAGTTGATACAGA

Function

symbol description
prpf3 Acts upstream of or within retina development in camera-type eye. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 18. Orthologous to human PRPF3 (pre-mRNA processing factor 3).

NR:

description
PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0046540 U4/U6 x U5 tri-snRNP complex cellular_component

KEGG:

id description
K12843 PRPF3, PRP3; U4/U6 small nuclear ribonucleoprotein PRP3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261955.1 True 3010 mRNA 0.45 17 10391834 10403036

Neighbor

gene id symbol gene type direction distance location
ice1 LOC107746963,LOC107691875,LOC107566277,LOC107735420 coding downstream 5240 10372411 ~ 10386594 (-)
LOC122361022 LOC107572826,LOC106588695 coding downstream 19563 10364421 ~ 10372271 (-)
adcy2a adcy2a,LOC107664610,LOC107551198,LOC108429235,LOC108272199 coding downstream 37238 10287086 ~ 10354596 (-)
triob triob,LOC107746974,LOC108429234,LOC106579830,LOC106605411 coding downstream 197540 10099563 ~ 10194294 (-)
cobl LOC107684220,LOC107551210,LOC107746964 coding downstream 337009 10014939 ~ 10054825 (-)
LOC122361025 LOC107757443,LOC107691877 coding upstream 4979 10408015 ~ 10422279 (-)
mal2 mal2,LOC107757438,LOC107571097,LOC107738940,LOC107677950,LOC107683116 coding upstream 150124 10553160 ~ 10569797 (-)
colec10 LOC107738939,LOC107574455,LOC107677951 coding upstream 168715 10571751 ~ 10587718 (-)
LOC122361028 cabz01093075.1,LOC107601667,LOC107751875,LOC107746976,LOC107704092,LOC107684228,LOC107551204 coding upstream 405301 10808337 ~ 10811017 (-)
LOC122361032 LOC107746978,LOC107684223,LOC107551206,LOC107704083,LOC107751909,LOC107601659 coding upstream 414855 10817891 ~ 10823189 (-)
G111097 NA non-coding downstream 516170 9875392 ~ 9875664 (-)
G111048 NA non-coding downstream 636854 9754315 ~ 9754980 (-)
G111045 NA non-coding downstream 715329 9674864 ~ 9676505 (-)
G111025 NA non-coding downstream 767715 9623700 ~ 9624119 (-)
G111024 NA non-coding downstream 771381 9620119 ~ 9620453 (-)
G111298 NA non-coding upstream 327132 10730168 ~ 10730415 (-)
G111329 triob,LOC107746974,LOC107551199,LOC107684227,LOC107601652,LOC107751902 non-coding upstream 388528 10791564 ~ 10793616 (-)
LOC122361039 NA non-coding upstream 521079 10924115 ~ 10924764 (-)
G111393 NA non-coding upstream 756803 11159839 ~ 11160056 (-)
G111420 NA non-coding upstream 822150 11225186 ~ 11225409 (-)
gask1a fam198a,LOC107732434,LOC107657576,LOC107751903,LOC107704082 other downstream 488853 9877211 ~ 9902981 (-)
G110974 NA other downstream 1119229 9270971 ~ 9272605 (-)
G110911 LOC107749154,LOC107686954,LOC107596765,LOC108428931,LOC108268943,LOC107751895,LOC107656720 other downstream 1239651 9145930 ~ 9152183 (-)
wu:fj39g12 nppcl,LOC107744681,LOC107699924,LOC107749278,LOC107685603 other downstream 1755612 8633350 ~ 8636222 (-)
G110556 NA other downstream 2075149 8312265 ~ 8316685 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other upstream 342540 10745576 ~ 10764305 (-)
LOC122360812 cobl,LOC107746964,LOC107684220,LOC107551210 other upstream 454484 10857520 ~ 10883424 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other upstream 866584 11269620 ~ 11286432 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other upstream 930139 11333175 ~ 11386993 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other upstream 1007642 11410678 ~ 11411777 (-)

Expression


Co-expression Network