LOC122361028 (cabz01093075.1,LOC107601667,LOC107751875,LOC107746976,LOC107704092,LOC107684228,LOC107551204)


Basic Information

Item Value
gene id LOC122361028
gene name cabz01093075.1,LOC107601667,LOC107751875,LOC107746976,LOC107704092,LOC107684228,LOC107551204
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 10808337 ~ 10811017 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261960.1
ttatagcttttttaaaatagtaccTGTTTATATGCCTTTAATATGCCAAGACAGTACTTTGAATATGAGCCATGACCCATACCTTTTACAGCAAACACCTGTCAGTTTGAACTGGTTATGGTTTCACACTTTGGTTGGTAAACCAGCTCTTGAAAACATTCAATGTCACAGAATAAGTCTGAATGTCACAGGTGGTTTCCACCACAGATCGCAGCTCGTGGTGCTAATAGTACACCTCTGGGATTCTGATTATGAATTCTACAGCTGTGTCTCTGAGcGTGGTGTGGCACAACACAACACTGTCCAGTGTGGATGCTACAACTACTGAAAGTACTACAGAAGACTATTCTGGCTACTATGATGGAGATTTCGATTCGTCTGCATTGTCCTGCGTTTATGGAGAATATGGAGCCAGCATTCTTTCTGTGTTGTACTCCCTGTTTTTTGTGGTGGGCTTTCTGGGTAACGTACTGGTGATCTGGGTGGTCTTGATGGGTGTGAGGCTGAGAAGCATGACTGACATCTGTCTTCTGAACCTTGCTATTGCTGACCTGTTCTTGGTCTCTTCTCTCCCCTTCTTGGCACACTATGCCAGAAACCACTGGATCTTTGGAGATGTTATGTGCACTATAGTCCTTAGTGTCTACCACATTGGATTCTATAGTGGGATATTCTTTATTGTACTGATGAGTGTTGATCGGTACTTGGCtgtagttcatgctgtttttgccCTGAGAGTCAGAACAAGGACATACGGTATTTTAGCCAGTATGGTCATATggattatttcagttttggCATCCTTTCCTGAGTTAATTCACCTTAAAACCACGGAAAAAGATAATGCAACTTATTGTAGATCTTATCCAGCAAACGATCAAAATTCTAGTCATTATTCAAAGACTTTTGgtatcattaaaatgaatatcatgGGTTTAATTGTTCCGCTTTTTGTGATTGGTTTTTGTTACTCAATGATTTTGATGAGGCTCCTGACGGTTCGCTCTTCTAGGAGGCAGGCCATGCGTCTCGTCATTGCAGTGATGGTCGTCTTCTTCTGCTGTTGGGCTCCATACAATATTGTAGCTTTTGTGAAAGCCTTAGAGCTaaatgactttataactcaATCTTGTGACAGAAGCAAGGCAATCAATCTAAGTCTGCAGATCACAGAAGCTTTGGCTTATTCACACAGCTGTGTGAATccttttctttatgtatttgtgGGAGAGAAATTTAGAAGGCATCTTTTCAGACTCCTGCACAGAACACCCTTCAGTAGGCTGCAGTTCATGAAGAGTTACATCATACAGGCCACAGGATCTGTTTACTCACAGACCACTAGTGTGGATGAGAGATCAACTACAGCTGTttgaataaagtgttactgagaATAGAGAATACAGACAGaaataagtcaataaataaatgaatataggGTTTACTTGCATAGTGAAAAAAACCCTAATGCATCTACTGACAAACATTTTTCCACCGCCACccgaaaaaaatgtatagaaatgaaTGCAGTTTGTATATAAGCAGTTCGAGTGGAAGATTCATTGGAAAGTTGCAAGTACACAAGGCCAAGTTTTGAACAACTGgactgttaaaattaaaaacgcaGATCATACAATGTAATTCACAGGCCTTGTAGTGTTATTTGTGCATAtatctgtaaatgtttgtaattattttttatttaatgtttttcagaattgttgtttttctagTAACCAGTAActgttttttgtattaatgtatGAATATACGTGAATATACATCAGTTTGCACTGTTACAGAATTTTtgtgtttacttttttgtttatattttgttttaatgcatggcTTCAATAAAATGCATGTGACTGTGTG
>XM_043261961.1
ACATCACTGTCATACTTTACACCTCTGGGATTCTGATTATGAATTCTACAGCTGTGTCTCTGAGcGTGGTGTGGCACAACACAACACTGTCCAGTGTGGATGCTACAACTACTGAAAGTACTACAGAAGACTATTCTGGCTACTATGATGGAGATTTCGATTCGTCTGCATTGTCCTGCGTTTATGGAGAATATGGAGCCAGCATTCTTTCTGTGTTGTACTCCCTGTTTTTTGTGGTGGGCTTTCTGGGTAACGTACTGGTGATCTGGGTGGTCTTGATGGGTGTGAGGCTGAGAAGCATGACTGACATCTGTCTTCTGAACCTTGCTATTGCTGACCTGTTCTTGGTCTCTTCTCTCCCCTTCTTGGCACACTATGCCAGAAACCACTGGATCTTTGGAGATGTTATGTGCACTATAGTCCTTAGTGTCTACCACATTGGATTCTATAGTGGGATATTCTTTATTGTACTGATGAGTGTTGATCGGTACTTGGCtgtagttcatgctgtttttgccCTGAGAGTCAGAACAAGGACATACGGTATTTTAGCCAGTATGGTCATATggattatttcagttttggCATCCTTTCCTGAGTTAATTCACCTTAAAACCACGGAAAAAGATAATGCAACTTATTGTAGATCTTATCCAGCAAACGATCAAAATTCTAGTCATTATTCAAAGACTTTTGgtatcattaaaatgaatatcatgGGTTTAATTGTTCCGCTTTTTGTGATTGGTTTTTGTTACTCAATGATTTTGATGAGGCTCCTGACGGTTCGCTCTTCTAGGAGGCAGGCCATGCGTCTCGTCATTGCAGTGATGGTCGTCTTCTTCTGCTGTTGGGCTCCATACAATATTGTAGCTTTTGTGAAAGCCTTAGAGCTaaatgactttataactcaATCTTGTGACAGAAGCAAGGCAATCAATCTAAGTCTGCAGATCACAGAAGCTTTGGCTTATTCACACAGCTGTGTGAATccttttctttatgtatttgtgGGAGAGAAATTTAGAAGGCATCTTTTCAGACTCCTGCACAGAACACCCTTCAGTAGGCTGCAGTTCATGAAGAGTTACATCATACAGGCCACAGGATCTGTTTACTCACAGACCACTAGTGTGGATGAGAGATCAACTACAGCTGTttgaataaagtgttactgagaATAGAGAATACAGACAGaaataagtcaataaataaatgaatataggGTTTACTTGCATAGTGAAAAAAACCCTAATGCATCTACTGACAAACATTTTTCCACCGCCACccgaaaaaaatgtatagaaatgaaTGCAGTTTGTATATAAGCAGTTCGAGTGGAAGATTCATTGGAAAGTTGCAAGTACACAAGGCCAAGTTTTGAACAACTGgactgttaaaattaaaaacgcaGATCATACAATGTAATTCACAGGCCTTGTAGTGTTATTTGTGCATAtatctgtaaatgtttgtaattattttttatttaatgtttttcagaattgttgtttttctagTAACCAGTAActgttttttgtattaatgtatGAATATACGTGAATATACATCAGTTTGCACTGTTACAGAATTTTtgtgtttacttttttgtttatattttgttttaatgcatggcTTCAATAAAATGCATGTGACTGTGTG

Function

symbol description
cabz01093075.1 Predicted to enable chemokine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including CCR4 (C-C motif chemokine receptor 4) and CCR8 (C-C motif chemokine receptor 8).

NR:

description
PREDICTED: C-C chemokine receptor type 5-like

GO: NA

KEGG:

id description
K04179 CCR4, CD194; C-C chemokine receptor type 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261960.1 True 1875 mRNA 0.38 4 10808337 10810978
XM_043261961.1 False 1662 mRNA 0.38 4 10808337 10811017

Neighbor

gene id symbol gene type direction distance location
colec10 LOC107738939,LOC107574455,LOC107677951 coding downstream 220619 10571751 ~ 10587718 (-)
mal2 mal2,LOC107757438,LOC107571097,LOC107738940,LOC107677950,LOC107683116 coding downstream 238540 10553160 ~ 10569797 (-)
LOC122361025 LOC107757443,LOC107691877 coding downstream 386058 10408015 ~ 10422279 (-)
prpf3 prpf3,LOC107677690,LOC107719195 coding downstream 405301 10391834 ~ 10403036 (-)
ice1 LOC107746963,LOC107691875,LOC107566277,LOC107735420 coding downstream 421743 10372411 ~ 10386594 (-)
LOC122361032 LOC107746978,LOC107684223,LOC107551206,LOC107704083,LOC107751909,LOC107601659 coding upstream 6874 10817891 ~ 10823189 (-)
LOC122360214 LOC107752837,LOC107662667,LOC107581612 coding upstream 626356 11437373 ~ 11453509 (-)
LOC122360822 LOC107596715 coding upstream 682082 11493099 ~ 11501213 (-)
skap2 skap2,LOC107743153,LOC107684555,LOC107685583 coding upstream 787314 11598331 ~ 11614258 (-)
hoxa2b hoxa2b,LOC107685611,LOC107684556,LOC107550809,LOC107743221,LOC107744722,LOC107596758 coding upstream 808496 11619513 ~ 11630905 (-)
G111329 triob,LOC107746974,LOC107551199,LOC107684227,LOC107601652,LOC107751902 non-coding downstream 14721 10791564 ~ 10793616 (-)
G111298 NA non-coding downstream 77922 10730168 ~ 10730415 (-)
G111097 NA non-coding downstream 932673 9875392 ~ 9875664 (-)
G111048 NA non-coding downstream 1053357 9754315 ~ 9754980 (-)
G111045 NA non-coding downstream 1131832 9674864 ~ 9676505 (-)
LOC122361039 NA non-coding upstream 113098 10924115 ~ 10924764 (-)
G111393 NA non-coding upstream 348822 11159839 ~ 11160056 (-)
G111420 NA non-coding upstream 414169 11225186 ~ 11225409 (-)
G111421 NA non-coding upstream 414765 11225782 ~ 11226073 (-)
G111437 NA non-coding upstream 449728 11260745 ~ 11261048 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other downstream 44032 10745576 ~ 10764305 (-)
gask1a fam198a,LOC107732434,LOC107657576,LOC107751903,LOC107704082 other downstream 905356 9877211 ~ 9902981 (-)
G110974 NA other downstream 1535732 9270971 ~ 9272605 (-)
G110911 LOC107749154,LOC107686954,LOC107596765,LOC108428931,LOC108268943,LOC107751895,LOC107656720 other downstream 1656154 9145930 ~ 9152183 (-)
wu:fj39g12 nppcl,LOC107744681,LOC107699924,LOC107749278,LOC107685603 other downstream 2172115 8633350 ~ 8636222 (-)
LOC122360812 cobl,LOC107746964,LOC107684220,LOC107551210 other upstream 46503 10857520 ~ 10883424 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other upstream 458603 11269620 ~ 11286432 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other upstream 522158 11333175 ~ 11386993 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other upstream 599661 11410678 ~ 11411777 (-)
LOC122361049 c16h2orf66,LOC107743229 other upstream 1054663 11865680 ~ 11867315 (-)

Expression


Co-expression Network