colec10 (LOC107738939,LOC107574455,LOC107677951)


Basic Information

Item Value
gene id colec10
gene name LOC107738939,LOC107574455,LOC107677951
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 10571751 ~ 10587718 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261967.1
GTAAACATAAGTAAAACTCCCTTTTCACTCTTCTCTTGAGAAAGGGCGAAGTCATGGATGAACAAAATTTCAGCAggaagctttttttatttctttttttttgtaatttacacCTTTATTGTACTACAACCAAAGTCTGTTTCAACAGCATTCTCCCTGGATCaaaagGCAATGCAGGTGAGGTGGGAGCAGAAGGTGAAGAGGGAAGATTGGGGAAAACCGGTCCACCTGGCCCGCAAGGCTTGACCAGTGAATATGGAGAAAAAGGAGAGATGGGAAGAATAGGAAAAATGGGCCCTAGTGGAATGAGAGGTGCCAAGGGACGAGAAGGAATGAATGGTCTCCCAGGATTAAAAGGAAAACATGGTACTAACTGTGACTGTGGAAGGTACAGAAAGGTTGTTGGACAGATGGACATCAATATAAGCAAACTGAAAAATGCTATCAAGTTTCTTAAGAATGTGGTTCTAGGTATCAGGGAAACTGAGAACATGTTTTACCTGCTGGTGACAGAGGCACGGAGGTATCAAGAGTCACTTCGAAACTGCAAGTTGCGTGGGGGGTCTCTTGCTATGCCcagaaacacagagacaaacatCCTGCTGGCTGACTATATCAGAGAAGCTGATCTTACTCATGTGTTCATAGGGCTACAGGTAGGGGTGACAGAGGTGGGGTACACATATGTTGATGGCAATTCCTTGTTAAATACAACAGTCTGGTCTCTACAGAGCCCAAACAGTGGTAAAGGTGACTGTGTGCAGCTTAGTAGTACTGGAGCCTGGAGCATGGTAGAATGTGCAGCCACACAGTACTATATATGTGAGTTTGTCAAAAATGAAAGTACTTCACAAACTTCAGTTTTGTGATGGTTTAATGGCCACAGGGAATTTTTacgttttactatttttattaggtAAGCGAACTATATCAACTAAGATAATGTGAGTAAATGTCATATAACGTTACTgcatttagaatttttgtaaagaaaagttttaatgtgttttattttatgatttatcaaacattttatgaattggGAATTAATGGTAAGGGAACTTTTCActgtaattgtattatttttatgacaacAGTACTACAGGCAACAAATAAACCAAATTACAATAAGCTACTGAAACTGCTGAATGGTTattttctatccatccatctaattTCTCCCGCTTATCCGGGGCGCCGGGTCGTGGGGGTAGAAgtcttccctctccccagatttccctctccccagacacttcctccagcttcTCCGGGAGAAGACCGAGGTGCTCTCAGGCCAGCCATGTCCTAGGTCTTTCCCAGGGGCTTCTTCCCGgttattttctaattaaatataatttcagagTACATACAGTGCTATGGCAAAGTTTGGGCACCCCTAtaaattttcatgatttttctttataaatcattGTTTGTCTGGACAAgaaattt

Function

NR:

description
collectin-10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261967.1 True 1452 mRNA 0.41 7 10571751 10587718

Neighbor

gene id symbol gene type direction distance location
mal2 mal2,LOC107757438,LOC107571097,LOC107738940,LOC107677950,LOC107683116 coding downstream 1954 10553160 ~ 10569797 (-)
LOC122361025 LOC107757443,LOC107691877 coding downstream 149472 10408015 ~ 10422279 (-)
prpf3 prpf3,LOC107677690,LOC107719195 coding downstream 168715 10391834 ~ 10403036 (-)
ice1 LOC107746963,LOC107691875,LOC107566277,LOC107735420 coding downstream 185157 10372411 ~ 10386594 (-)
LOC122361022 LOC107572826,LOC106588695 coding downstream 199480 10364421 ~ 10372271 (-)
LOC122361028 cabz01093075.1,LOC107601667,LOC107751875,LOC107746976,LOC107704092,LOC107684228,LOC107551204 coding upstream 220619 10808337 ~ 10811017 (-)
LOC122361032 LOC107746978,LOC107684223,LOC107551206,LOC107704083,LOC107751909,LOC107601659 coding upstream 230173 10817891 ~ 10823189 (-)
LOC122360214 LOC107752837,LOC107662667,LOC107581612 coding upstream 849655 11437373 ~ 11453509 (-)
LOC122360822 LOC107596715 coding upstream 905381 11493099 ~ 11501213 (-)
skap2 skap2,LOC107743153,LOC107684555,LOC107685583 coding upstream 1010613 11598331 ~ 11614258 (-)
G111097 NA non-coding downstream 696087 9875392 ~ 9875664 (-)
G111048 NA non-coding downstream 816771 9754315 ~ 9754980 (-)
G111045 NA non-coding downstream 895246 9674864 ~ 9676505 (-)
G111025 NA non-coding downstream 947632 9623700 ~ 9624119 (-)
G111024 NA non-coding downstream 951298 9620119 ~ 9620453 (-)
G111298 NA non-coding upstream 142450 10730168 ~ 10730415 (-)
G111329 triob,LOC107746974,LOC107551199,LOC107684227,LOC107601652,LOC107751902 non-coding upstream 203846 10791564 ~ 10793616 (-)
LOC122361039 NA non-coding upstream 336397 10924115 ~ 10924764 (-)
G111393 NA non-coding upstream 572121 11159839 ~ 11160056 (-)
G111420 NA non-coding upstream 637468 11225186 ~ 11225409 (-)
gask1a fam198a,LOC107732434,LOC107657576,LOC107751903,LOC107704082 other downstream 668770 9877211 ~ 9902981 (-)
G110974 NA other downstream 1299146 9270971 ~ 9272605 (-)
G110911 LOC107749154,LOC107686954,LOC107596765,LOC108428931,LOC108268943,LOC107751895,LOC107656720 other downstream 1419568 9145930 ~ 9152183 (-)
wu:fj39g12 nppcl,LOC107744681,LOC107699924,LOC107749278,LOC107685603 other downstream 1935529 8633350 ~ 8636222 (-)
G110556 NA other downstream 2255066 8312265 ~ 8316685 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other upstream 157858 10745576 ~ 10764305 (-)
LOC122360812 cobl,LOC107746964,LOC107684220,LOC107551210 other upstream 269802 10857520 ~ 10883424 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other upstream 681902 11269620 ~ 11286432 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other upstream 745457 11333175 ~ 11386993 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other upstream 822960 11410678 ~ 11411777 (-)

Expression


Co-expression Network