aicda (aicda,LOC107549448,LOC107692585,LOC107724977,LOC107744312,LOC107598400,LOC107672983)


Basic Information

Item Value
gene id aicda
gene name aicda,LOC107549448,LOC107692585,LOC107724977,LOC107744312,LOC107598400,LOC107672983
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13546280 ~ 13548312 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261975.1
CTGACTTTCGCTAGACTAAATGAGTTAGCAAGTTTCGACTTTCGGAATGATCAGCAAGCTGGACAGTGTGCTCATGACCCAGAGGAAATTTATCTTCCATTATAAGAATGTGCGCTGGGCCCGAGGGAGACATGAGACATACCTTTGCTTTGTAGTAAAGAGACGCACCGGCCCTCAATCCCTCTCTTTTGACTTTGGGCACCTGCGCAATCGCTCCGGCTGCCACGTAGAGCTGCTCTTCCTACGTCACTTGGGTGCGTTGTGTCCGGGGCTGTGGGGCTCCAGTGTGGACGGTGCTGGAATGCGTTACGCAGTGACCTGGTTCTGCTCCTGGTCGCCCTGCTCTAAATGCGCTGATCAACTTGCCCACTTCCTGTCACAGACGCCCAATCTGCGTCTGAGAATCTTTGTGTCACGCCTTTACTTCTGTGACGATGAGGACAGCCGGGAGAGGGAAGGACTGCGACACCTGAAGAGGGCAGGAGTGCAGATCTCTGTCATGACTTATAAAGacTATTTCTACTGCTGGCAAACATTTGTTGCACGGAGGGAGAGGAGATTTAAAGCCTGGGATGGCCTTCACCAAAACTCTGTCCGACTCGTTCGAAAACTCAATCGGATCCTGCAGcCCTGCGAGACTGAGGATCTGAGGGACGGTTTCGCTCTCCTCGGGCTATTACCACAAATATGAGATTCGCAAATCGATGAACACTGAGATATTAACTGAATGGGATGAAGAGAAACGGTGCTGTACGACCTGAGACTTGAATCTTTTGACTTGAATCTGATGTAATACTTGATTTAAATCTTGTACTGTATTGTATGTAGCATTAATGAGATTATGTTGgatgccaaaataa

Function

symbol description
aicda Enables cytidine deaminase activity. Acts upstream of or within somatic cell DNA recombination. Predicted to be active in cytoplasm and nucleus. Is expressed in head and intestine. Human ortholog(s) of this gene implicated in hyperimmunoglobulin syndrome and immunodeficiency with hyper-IgM type 2. Orthologous to human AICDA (activation induced cytidine deaminase).

NR:

description
PREDICTED: single-stranded DNA cytosine deaminase

GO:

id name namespace
GO:0016444 somatic cell DNA recombination biological_process
GO:0009972 cytidine deamination biological_process
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0004126 cytidine deaminase activity molecular_function

KEGG:

id description
K10989 AICDA, AID; activation-induced cytidine deaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261975.1 True 860 mRNA 0.49 5 13546280 13548312

Neighbor

gene id symbol gene type direction distance location
epn1a epn1,LOC107672968,LOC107598387,LOC107724817,LOC107744298 coding downstream 29778 13506631 ~ 13516502 (-)
u2af2a LOC107692567,LOC107672971,LOC107724853,LOC107598390 coding downstream 52029 13487351 ~ 13494251 (-)
cacng6b cacng6b,LOC107549474,LOC107692568,LOC107724866,LOC107744303,LOC107672978,LOC107598398 coding downstream 60570 13473475 ~ 13485710 (-)
pitpnc1b zgc:101640,LOC107692561,LOC107549471,LOC107737922,LOC107598395,LOC107672976,LOC107750023,LOC108437483 coding downstream 226517 13306028 ~ 13319763 (-)
josd2 josd2,LOC107549461,LOC107750011,LOC107737925,LOC107598457,LOC107692554,LOC107672995 coding downstream 341683 13201382 ~ 13204597 (-)
nat14 nat14,LOC107724968,LOC107549449,LOC107744294,LOC107692586,LOC107672977,LOC107598397 coding upstream 4228 13552540 ~ 13555963 (-)
znf628 LOC107724809,LOC107549478,LOC107744293,LOC107598382,LOC107672962,LOC107692578 coding upstream 7938 13556250 ~ 13564227 (-)
il11a NA coding upstream 17090 13565402 ~ 13573595 (-)
rasip1 rasip1,LOC107549479,LOC107724795,LOC107744292,LOC107598383 coding upstream 43720 13592032 ~ 13604741 (-)
si:dkey-26c10.5 LOC107549484,LOC107724725,LOC107700203,LOC107672979 coding upstream 125444 13673756 ~ 13678258 (-)
G112350 NA non-coding downstream 2969 13534721 ~ 13543311 (-)
G112327 NA non-coding downstream 74594 13449507 ~ 13471686 (-)
G112339 NA non-coding downstream 84555 13455557 ~ 13461725 (-)
G112336 cacng7b,LOC107724890,LOC107549472,LOC107598394,LOC107672975,LOC106570002,LOC105902015 non-coding downstream 99102 13440670 ~ 13447178 (-)
G112315 NA non-coding downstream 111985 13431144 ~ 13434295 (-)
G112361 NA non-coding upstream 58319 13606631 ~ 13609334 (-)
G112377 NA non-coding upstream 70375 13618687 ~ 13619336 (-)
G112385 NA non-coding upstream 100315 13648627 ~ 13736231 (-)
G112390 NA non-coding upstream 110693 13659005 ~ 13659470 (-)
G112363 leng8,LOC107724921,LOC107700201,LOC107744285,LOC107672965,LOC107549486,LOC107598384 non-coding upstream 140194 13688506 ~ 13693963 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 1167831 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 1678965 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 2134503 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 2159287 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 2259848 11269620 ~ 11286432 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 105748 13654060 ~ 13683909 (-)
G112478 NA other upstream 686242 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 949951 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 1034167 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 1350870 14899182 ~ 14904907 (-)

Expression


Co-expression Network