LOC122361052 (foxo1b,LOC107686122,LOC107746988,LOC107588742,LOC107577289,LOC107691691)


Basic Information

Item Value
gene id LOC122361052
gene name foxo1b,LOC107686122,LOC107746988,LOC107588742,LOC107577289,LOC107691691
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1282311 ~ 1292313 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261994.1
GCGAGTTAAAACCGGGATGGAAATTGAATATGAGTCGCTGTCTGAACACATGCAACCATTATTTCTCCAAGCCAGACTCACTTCAACATGACTCGCTCTCGTCTACAGCATCCTCCTCTGTGAGGTGGGCTCTTTGAGGCGTTTCTGAGAACACGGTATCACCTGACTACATCTACCTGGCATCGGCTTATTAAGAACAGACGATGATGATAGAGGAGGATGAAGCGGAGGCTCATCAGGTGGATATGGAGTCGGATTTGGTCAGCAGACCTCGCTCGTGCAGCTGGACGAACGACTTCTCGTGTGAGCTGAACGCGGATCTGTCGCTTAATCTCTCCATATTTAAAGTAGATTCGGGTCATGTTCAATCACCGGCGTgcaggaggaggatgatgatgctGGATGCCGGAGGATTTCGCGACTTAGCGGGAGCTGCGTTACGCAAAACCAAGGCGTCCTCCCGGCGGAACGCGTGGGGAAACCAGTCCTACGCGGAGCTCATCACCCGAGCCATCGAGAGCACACCCGAGAAGAGACTAACCCTGTCTCAGATCTACGACTGGATGGTCCGATATGTGCCCTATTTTAAAGATAAAGGAGACAGCAACAGCTCTGCCGGATGGAAGAACTCAATCAGACACAATCTATCCTTGCACAGTCGTTTTGTGCGCGTCCAGAATGAAGGAACAGGGAAGAGCTCGTGGTGGATGCTGAACCCTGAGGGGGGAAAGAGTGGCAAGTCTCCACGCCGGAGAGCCACTTCCATGGACAACAACAGCAAGTTCACGAAGAGCCGCGGACGAGCAGCCAAGAAAAAGATGTCGATGCAGGGTGGACTGGACGGTGGTTCTAACAGTCCTGGTTCTCAGTACCCTAAATGGCTCGGCAGCCCCAACTCTCACAGCAATGATGACTTTGAACCCTGGACCACCTTTCGTACCCGCGCCAGCTCTGATGCCAGTACGCTAAGCGGCCGTCGCTCACCCTTCCTACCTGAGGAGGACGAGGCGGGTGAGGTTCCCATCGGGTATCCAAGCACCAAACTGGGCGGCCCCCTCCCCAGCCTGTCCGAAGTGGCGGGTCACCACGGTTCAGAGAACGTGATGATGGACAATCTCTTAGACAACCTCAACCTCATCTCGCCCAAAAATAACACCCAGGGCAGCCAAGATGCCCAAACTGCGTTGTCTTCGCCCATGATGCAGGGTAGCCCTGGGTACCCATCTTACAACTCCCCCAGTATGGGTCCCCAGCCACAAGTCCAGCAGGACTACCGGAGGTGCCTGTATGGACAAGCCAGGGTGGGCGGACAGAGCCCCATTGCCATACCGACTTTATCGGACAGTCAACCAGGAGGCTACGGACCCTTCGTGAGTCAGTACAACTGTGCCGCAGGACTGCTCAAAGAGCTGCTGACCGCAGAGGCCGATCCAAGAGGAGACATGATGCAAACTTTAGAGTCAGTGGGGTCTGGAGAAGGGCGACGGGGGCTACCTAGCTATGCTAGTCAAGGACAAATGGGACAGGGGGGCAAAATGATCACGCATCCTCACTTGCATGGGCATCCACGCTCGCTTCATCAATTGCCATCACCAGGAATGGGCATGAACGGCTGTGGTCTGCTGCCCCACGGGCATCCTGGTCGCCTCGGTAACATGAAGCTACAACCACACCTGCCTCATCATGCTCAACTGGGAAGAGGCGGAGGCGAAGCCAGGATGCCAAATTACACCAATGGCAACGGTTTCCACAGACACGGACCGGGTCTTCATCACCATCACAGCCACCCGGAGCGCCTGCCCAGTGACTTAGATGACATGTCGATCGAGCAGCTGGAGTGTGATGTAGAAACTGTCCTTCACGACACGCTCATGGACGGCGATGCTCTGGACTTCAACTTCGACCCCATGAACAGTCAACAGAGTTTCCCGCATGGAGTCAAGACCAATACGCATAGCTGGGTATCGGGATAAACCCCTTAGCTACTCAAATACAAATAGATTGGTGAGGAAGgctgtttttgaatttttttgtttttcatataatCATCATAACAAGTGTGTGTGaacatatatgtaaatatgtcatAGACATATAGCAGGTCAATCAACAGTTGACTGAAGCAGACTGAATGCTATAGGTCAGACCAAAAGGTTGCACAAACAAGAGAGATTTCAAGCTTACATTTCCTTCATGTCTGACTCAATTATTAAAagtctaaaatacaaaaattacaagtgaatacaaaacaaaagtcaaatgaataaatattttttggcatCATTGAAGCCCATCTCCACACAGTTGCGACTTTTCTTTGCTGTGATTGTTTCTGTCTTGTaattctttcttatttttctgcATATCTCTATATACCTTGCAATTCCAATTTAGTTTTCTCTTAATTCTGAGTGTATCTCTATCACAATTTTCTATAGTTGTgattatatctcacaattccgtttttttttttactttctcgCCTTTTTTACTGAACTACTTTATTTCTCATGGTTTTTACTGAGTGTCTTGCAActccaattttttttctcccaaaccTGAATTTATTTCTCGCCATTGTGACTTTCTTTCTCGTAGTTGTAACTGCAATAGTTATTCGTCCGACATGCATGCACCACCTCCTTCATTATTTCATGTAGTTGTGACTCTATTTCTCTCAATTCTGAATTTCTAACAATCGTGACTCGATTTCTTGTAGTTGTGAGTATAGATCTCGCAGTTTAATCCTCCCGATTCTgaatttatttctcacaattgtaACTTTAAGCCTTGAAGTTGTGATTCCAGTAGATAGTtaattgaaactgaaatattacCACTGTATGCATCaccatcaactttttttttacacttactTACTGACATTTCGTCCGATtctgaattgtatttatttctcacAGTTGCAACTTTATTTCTCGTAATTGTAGTTATTCTCGTATCTCGTAGATATTTCTCTGAACTCTGGCTTTATCTCTTACCACTGCGACTTtgtatactttttataaaatcGACAAACTTACTGACATGACTTTAGTTCCTCATTgcggttctctctctctctctgaagtgCGTGCATGCACCTCATGAACTGTTTACCTCAGTCAGAACTTCAAGGCCAGTGAACGGTCATTATTTACTGATTTACAGTACATTGTTCCAGTAGACTCCATGATTGTCGGGAATCATCATAATCTGCTTTTTGCTTGTGGTTAGTCCGAGTGTAAATATTGAAACGGGCTAATCAAAAATGGTCACGTCAAACACTCACAGACATTTGAgattgttttgtatatttttgcctATTTGGTCTTTCAGTTTGGCACTGTAGGTCACTAAAACGAATTCAGGGCAGATGTGTGTGTCATATAAACTGGAGTGCTGTATAATGTCTGGTATAGTGTACATTATGGTTATCTTTTGTCATTTCAGGGTGctgaatgaatgtgttttgtacagagatgtatatttttgttcttctgATGGGATGGTcaatgaaatgtttatatttgta

Function

symbol description
foxo1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within lymph vessel development. Predicted to be active in nucleus. Is expressed in head; olfactory epithelium; and pericardial region. Human ortholog(s) of this gene implicated in alveolar rhabdomyosarcoma. Orthologous to human FOXO1 (forkhead box O1).

NR:

description
PREDICTED: forkhead box protein O1-B

GO:

id name namespace
GO:0032873 negative regulation of stress-activated MAPK cascade biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009888 tissue development biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0001568 blood vessel development biological_process
GO:0007389 pattern specification process biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09408 FOXO3; forkhead box protein O3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261994.1 True 3532 mRNA 0.46 3 1282311 1292313

Neighbor

gene id symbol gene type direction distance location
LOC122361256 NA coding downstream 987326 294867 ~ 294985 (-)
LOC122361163 NA coding downstream 1003837 278356 ~ 278474 (-)
LOC122361151 NA coding downstream 1004232 277961 ~ 278079 (-)
LOC122361280 NA coding downstream 1006206 275987 ~ 276105 (-)
LOC122361170 NA coding downstream 1007794 274399 ~ 274517 (-)
LOC122359849 mbp,LOC107661001,LOC107551742,LOC107697274 coding upstream 204273 1496586 ~ 1510434 (-)
pmvk pmvk,LOC107551729,LOC107717898,LOC107735019,LOC107661023,LOC107714427,LOC107697277 coding upstream 252974 1545287 ~ 1549931 (-)
si:ch73-341k19.1 LOC107551746 coding upstream 356054 1648367 ~ 1654527 (-)
nt5c3a LOC107714420,LOC107661006,LOC107551731,LOC107697280,LOC107720166,LOC107581689 coding upstream 364235 1656548 ~ 1662627 (-)
foxo6a LOC107714419,LOC107551733,LOC107661026,LOC107720174,LOC107697267,LOC107581751 coding upstream 392591 1684904 ~ 1704721 (-)
G109316 NA non-coding downstream 1056 1280870 ~ 1281255 (-)
G109308 zmp:0000001073,LOC107713869,LOC107692477,LOC107566287,LOC107564399 non-coding downstream 86482 1113743 ~ 1195829 (-)
G109292 NA non-coding downstream 316237 965738 ~ 966074 (-)
G109283 NA non-coding downstream 471703 810033 ~ 810608 (-)
G109276 NA non-coding downstream 621959 659968 ~ 660352 (-)
G109320 NA non-coding upstream 33307 1325620 ~ 1325934 (-)
G109430 NA non-coding upstream 228970 1521283 ~ 1521485 (-)
G109425 LOC107714432,LOC107661002,LOC107551745,LOC107717891,LOC107697276,LOC107581694 non-coding upstream 235780 1528093 ~ 1542296 (-)
G109439 NA non-coding upstream 344103 1636416 ~ 1636997 (-)
G109440 NA non-coding upstream 348464 1640777 ~ 1641312 (-)
G109287 NA other downstream 399559 882459 ~ 882752 (-)
G109275 NA other downstream 649414 632465 ~ 632897 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other upstream 448807 1741120 ~ 1964161 (-)
G109600 NA other upstream 1821529 3113842 ~ 3129979 (-)
G109724 LOC107084717,LOC106511825 other upstream 2802444 4094757 ~ 4095504 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 3939898 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 4490354 5782667 ~ 5790534 (-)

Expression


Co-expression Network