grhl2a (grhl2a,LOC107748679,LOC107564858,LOC107684167,LOC107596692,LOC107741979,LOC107656701)


Basic Information

Item Value
gene id grhl2a
gene name grhl2a,LOC107748679,LOC107564858,LOC107684167,LOC107596692,LOC107741979,LOC107656701
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8946171 ~ 8957450 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261996.1
CTCGTTCACAATAACAGTCACCTTGAGACTTCCGAGAATTAACACAATTTTCCGCTTGATCCTGAATGTTTGGCTGCTCTCCTTTGTGCGGAACAGACGGAGGATGCTGTAATGAGTGTCGGATGCGAGAAGTTGTTTGACCTGTAGTCCGAGTTTCCTTTCAGCCGTTCTCTGCGACTCACCTGCCTCATCTTCACCGACCTGAAAGTCCAGTTTCGCTGTGGGAGCCCAGCAGTGCACATGGCTCAGGAGGAGAATAAGCGTCTGGTGGTGGTGGTCCCTAATGAGATGAATATTCCATCACGCCGTGCCTTCACAAGTGAAGATGAGGCATGGAAATCTTACCTGGAGAATCCCCTGACTGCTGCCACCAAGGCCATGATGAGCATCAATGGAGATGAAGACAGCGTGGCTGCCCTTGGACTCCTTTATGATTACTATAAGGTTCCTAAAGAGAAGAGGCTCTTACCAGTACCCAAACTTCCAGAAGATCATGAAAAGAGCCGGATCGGTCAAGATGGCCTCGAGTCGGCAGAAAATCGAATCCAGGTCCTGAAGTCACTTCCTGTCAACCTGTCGTTGAATACTGACGTGCACAGTGCAGAAAATAAACCAGACCTGTTCGGTCCAGTGGCAGTTGAGGATGGTGTCGTGGCCACTGTGAAAGCTGAGGTTTACGCTCAGGCCTTCTCCAACCATCACCAGCCGCAGGGGGTCCAGTATCAGCGCATGACCTACCATCAGCCTTTACCAGATCCAGCGGGCATCAGCCACGACGGATACATGAAGGACGAACAGTGCAGTACGCCAGACAGCACCTTTGAGGACTCCTACCCAGAGGAGACTATGAAGTACAGGGTGCCCACCACACTAGGGGCAGAAGATTTCTCCCAGGAGCATTCAGGGATAGACATGTTTCAGTACAGTATAGAAGCGAGTCGTTCGGCCCGTGAGAAGGCCGGCGAGGGGCCCATGATCTACCTGAACAAGGGCCAGTTCTACGGCATCACTCTCAGTGAGACCGGGGCCAACAAGGGCCTTCGACATCCCATCAGTAAAGTGCGGAGTGTAGTGATGGTGGTGTTCGGACAGGAGAAATGTCGAGATGAGCAGCTAAAGCACTGGAACTATTGGCACTCCCGTCAGCACACGGCCAAACAGAGAGTCCTTGACATAGCTGACTACAAAGAGAGCTTCAGCACCATTGGCAACATTGAAGAAATCGCTTACAATGCTGTGTCCTTCACCTGGGACGTCAACGAGGAGGCAAAGGTTTTCATTACGGTGAACTGTCTGAGCACCGACTTCTCCTCACAGAAGGGAGTCAAAGGTCTTCCTCTTATGATCCAGATTGACACGTACAGTTACAACAACAGGAGCAACAGACCCATTCACAGAGCCTACTCCCAGATCAAGGTCTTCTGTGACAAGGGAGCAGAACGAAAAATTCGTGACGAGGAGAAAAAGCAGCTTCGgaaaaaggtcaaaggtcaagccGTTGGCCACCAGGGTCACGACGGTAAGAGAGGAAGCTTCTCCACTTTAGCTCAAAAGAGGCCAGATATTACGCTCTTTAAAACCATAACAGACCTGGAGTCCCAGCCTGTCCTGTTCATACCCGACGTCCATTTGAACAACCTCCAGAGAGCGGGTCAGGTGTTCAGTTTTGGTGTTGAAGAAATGGAGAGTGATGGTGTGGCCATGAAAAGACCGTTCCGGTCATCAGAAGAAGACGTTTCTCCACCCGCCAAACACAGCAGGGATGAAAGAAGAGTCCTGCTGTACGTAAGAAGAGAAACCGATGAGGTCTTTGACGCCCTGATGCTAAGGTCCCCAACACTGAAAAGTCTGCTTGAGGCAaTATCAGGCAAATATTCTGTTCCTGTGGagaaaatgactaaaatctATAAGAGAAGCAAGAAAGGTATCCTGGTCAACATGGACGACAACATCATTGCGCACTACTGCAACGAGGACACCTTCATCCTTTCCATCGACAATCAAGTGGACTGTTTTCGGGTGACCCTTACTGAAATTTAAACGCCACCGCCACAATAAGGCGCGCATCTAATGGGAGGACATTTGTTATCCTGAGGCGGCACGCGATTCATGCTGTGCATCTGTTTTGGTTCTTACGAGCTGCGTGTTAGAAGAGGAAGCGCTTCAGTGGACCCGCTTGTACAGTTTAACTCGTTCAAATATACTTCATGACGGATGGTCTGAACAACACATAAAATGCTCTTCCAAAGCACTATAATATGCCAGTCAAGTTTtacggcttttttttttccctttgatGTGCTATATCTCCCCCTTGAGGCCAACGCCGCGAAGCCTAGCAGATTTTCGCATGCATTCAGTCCTTTGCTATAATATTCGAACATAGGAGATCTATATAGATACTCTTATACTATGAAgacattgtattttaatatgctcaGCGTATAGCATACACTGACGGACGGCGCTAATGCTACACTGTATTTGTTATGTATCTTGTGTGTTACATGAATGTATAGTTTACACGTTTTCCTCATTGTGTTCTGTTTTGATGTCTTTACAAAAAATTAACATAccgtgtaaatatttttttatggttttattttatcagtTGAATAAACAAAGTCCAAGGAA
>XM_043261997.1
GCTCGTTCACAATAACAGTCACCTTGAGACTTCCGAGAATTAACACAATTTTCCGCTTGATCCTGAATGTTTGGCTGCTCTCCTTTGTGCGGAACAGACGGAGGATGCTGTAATGAGTGTCGGATGCGAGAAGTTGTTTGACCTGTAGTCCGAGTTTCCTTTCAGCCGTTCTCTGCGACTCACCTGCCTCATCTTCACCGACCTGAAAGTCCAGTTTCGCTGTGGGAGCCCAGCAGTGCACATGGCTCAGGAGGAGAATAAGCGTCTGGTGGTGGTGGTCCCTAATGAGATGAATATTCCATCACGCCGTGCCTTCACAAGTGAAGATGAGGCATGGAAATCTTACCTGGAGAATCCCCTGACTGCTGCCACCAAGGCCATGATGAGCATCAATGGAGATGAAGACAGCGTGGCTGCCCTTGGACTCCTTTATGATTACTATAAGGTTCCTAAAGAGAAGAGGCTCTTACCAGTACCCAAACTTCCAGAAGATCATGAAAAGAGCCGGATCGGTCAAGATGGCCTCGAGTCGGCAGAAAATCGAATCCAGGTCCTGAAGTCACTTCCTGTCAACCTGTCGTTGAATACTGACGTGCACAGTGCAGAAAATAAACCAGACCTGTTCGGTCCAGTGGCAGTTGAGGATGGTGTCGTGGCCACTGTGAAAGCTGAGGTTTACGCTCAGGCCTTCTCCAACCATCACCAGCCGCAGGGGGTCCAGTATCAGCGCATGACCTACCATCAGCCTTTACCAGATCCAGCGGGCATCAGCCACGACGGATACATGAAGGACGAACAGTGCAGTACGCCAGACAGCACCTTTGAGGACTCCTACCCAGAGGAGACTATGTACAGGGTGCCCACCACACTAGGGGCAGAAGATTTCTCCCAGGAGCATTCAGGGATAGACATGTTTCAGTACAGTATAGAAGCGAGTCGTTCGGCCCGTGAGAAGGCCGGCGAGGGGCCCATGATCTACCTGAACAAGGGCCAGTTCTACGGCATCACTCTCAGTGAGACCGGGGCCAACAAGGGCCTTCGACATCCCATCAGTAAAGTGCGGAGTGTAGTGATGGTGGTGTTCGGACAGGAGAAATGTCGAGATGAGCAGCTAAAGCACTGGAACTATTGGCACTCCCGTCAGCACACGGCCAAACAGAGAGTCCTTGACATAGCTGACTACAAAGAGAGCTTCAGCACCATTGGCAACATTGAAGAAATCGCTTACAATGCTGTGTCCTTCACCTGGGACGTCAACGAGGAGGCAAAGGTTTTCATTACGGTGAACTGTCTGAGCACCGACTTCTCCTCACAGAAGGGAGTCAAAGGTCTTCCTCTTATGATCCAGATTGACACGTACAGTTACAACAACAGGAGCAACAGACCCATTCACAGAGCCTACTCCCAGATCAAGGTCTTCTGTGACAAGGGAGCAGAACGAAAAATTCGTGACGAGGAGAAAAAGCAGCTTCGgaaaaaggtcaaaggtcaagccGTTGGCCACCAGGGTCACGACGGTAAGAGAGGAAGCTTCTCCACTTTAGCTCAAAAGAGGCCAGATATTACGCTCTTTAAAACCATAACAGACCTGGAGTCCCAGCCTGTCCTGTTCATACCCGACGTCCATTTGAACAACCTCCAGAGAGCGGGTCAGGTGTTCAGTTTTGGTGTTGAAGAAATGGAGAGTGATGGTGTGGCCATGAAAAGACCGTTCCGGTCATCAGAAGAAGACGTTTCTCCACCCGCCAAACACAGCAGGGATGAAAGAAGAGTCCTGCTGTACGTAAGAAGAGAAACCGATGAGGTCTTTGACGCCCTGATGCTAAGGTCCCCAACACTGAAAAGTCTGCTTGAGGCAaTATCAGGCAAATATTCTGTTCCTGTGGagaaaatgactaaaatctATAAGAGAAGCAAGAAAGGTATCCTGGTCAACATGGACGACAACATCATTGCGCACTACTGCAACGAGGACACCTTCATCCTTTCCATCGACAATCAAGTGGACTGTTTTCGGGTGACCCTTACTGAAATTTAAACGCCACCGCCACAATAAGGCGCGCATCTAATGGGAGGACATTTGTTATCCTGAGGCGGCACGCGATTCATGCTGTGCATCTGTTTTGGTTCTTACGAGCTGCGTGTTAGAAGAGGAAGCGCTTCAGTGGACCCGCTTGTACAGTTTAACTCGTTCAAATATACTTCATGACGGATGGTCTGAACAACACATAAAATGCTCTTCCAAAGCACTATAATATGCCAGTCAAGTTTtacggcttttttttttccctttgatGTGCTATATCTCCCCCTTGAGGCCAACGCCGCGAAGCCTAGCAGATTTTCGCATGCATTCAGTCCTTTGCTATAATATTCGAACATAGGAGATCTATATAGATACTCTTATACTATGAAgacattgtattttaatatgctcaGCGTATAGCATACACTGACGGACGGCGCTAATGCTACACTGTATTTGTTATGTATCTTGTGTGTTACATGAATGTATAGTTTACACGTTTTCCTCATTGTGTTCTGTTTTGATGTCTTTACAAAAAATTAACATAccgtgtaaatatttttttatggttttattttatcagtTGAATAAACAAAGTCCAAGGAA

Function

symbol description
grhl2a Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in brain development; neural tube development; and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in olfactory placode; otic placode; otic vesicle; pronephric duct; and pronephros. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 28 and posterior polymorphous corneal dystrophy 4. Orthologous to human GRHL2 (grainyhead like transcription factor 2).

NR:

description
PREDICTED: grainyhead-like protein 2 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261996.1 True 2634 mRNA 0.48 16 8946171 8957449
XM_043261997.1 False 2632 mRNA 0.48 16 8946171 8957450

Neighbor

gene id symbol gene type direction distance location
tapbpl LOC107749174,LOC107684168,LOC107596689,LOC107741975,LOC107564859,LOC107656706 coding downstream 1523 8938547 ~ 8944648 (-)
LOC122361100 LOC107736302,LOC107741982 coding downstream 83642 8857464 ~ 8862529 (-)
zgc:174935 zgc:174935,LOC107748729,LOC107684162,LOC107707940,LOC107596684 coding downstream 101347 8841494 ~ 8844824 (-)
LOC122360801 LOC107684163,LOC107748751,LOC107596677,LOC103041564 coding downstream 110569 8834699 ~ 8835602 (-)
si:dkey-17m8.1 LOC107748717,LOC107564863,LOC107684161,LOC107656699,LOC107596738 coding downstream 112291 8821665 ~ 8833880 (-)
ncalda ncalda,ncald,LOC100692199,LOC105901278,LOC106931336,LOC103042493,LOC108268956 coding upstream 3604 8961054 ~ 8996986 (-)
id4 id4,LOC107656716,LOC107748665,LOC107751915,LOC107596695,LOC107684172,LOC107564867 coding upstream 69530 9026980 ~ 9029706 (-)
cep76 cep76,LOC107684173 coding upstream 146064 9103514 ~ 9110755 (-)
ptpn2a LOC107748621,LOC107656702,LOC107686952 coding upstream 154812 9112262 ~ 9118118 (-)
LOC122360027 LOC107751895,LOC107656720 coding upstream 188450 9145900 ~ 9148999 (-)
G110807 NA non-coding downstream 100178 8845525 ~ 8845993 (-)
G110773 NA non-coding downstream 355537 8589898 ~ 8590634 (-)
G110753 NA non-coding downstream 394619 8547782 ~ 8551552 (-)
G110548 NA non-coding downstream 706995 8237758 ~ 8239176 (-)
G110546 NA non-coding downstream 710378 8234908 ~ 8235793 (-)
G110836 NA non-coding upstream 43337 9000787 ~ 9001428 (-)
G110842 NA non-coding upstream 47088 9004538 ~ 9005206 (-)
G110849 NA non-coding upstream 49847 9007297 ~ 9007532 (-)
G110852 NA non-coding upstream 73685 9031135 ~ 9031449 (-)
G110897 NA non-coding upstream 169235 9126685 ~ 9191339 (-)
wu:fj39g12 nppcl,LOC107744681,LOC107699924,LOC107749278,LOC107685603 other downstream 309949 8633350 ~ 8636222 (-)
G110556 NA other downstream 629486 8312265 ~ 8316685 (-)
G110554 cbx3,LOC107596654,LOC107743152,LOC107744695,LOC107550827 other downstream 643926 8298789 ~ 8302245 (-)
G110544 NA other downstream 729576 8216029 ~ 8216595 (-)
mkxb mkxb,LOC107681765,LOC107566716,LOC107691300,LOC107550429,LOC107747522,LOC107708850 other downstream 853716 8082900 ~ 8092455 (-)
G110911 LOC107749154,LOC107686954,LOC107596765,LOC108428931,LOC108268943,LOC107751895,LOC107656720 other upstream 188480 9145930 ~ 9152183 (-)
G110974 NA other upstream 313521 9270971 ~ 9272605 (-)
gask1a fam198a,LOC107732434,LOC107657576,LOC107751903,LOC107704082 other upstream 919761 9877211 ~ 9902981 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other upstream 1788126 10745576 ~ 10764305 (-)
LOC122360812 cobl,LOC107746964,LOC107684220,LOC107551210 other upstream 1900070 10857520 ~ 10883424 (-)

Expression


Co-expression Network