tpbgb (LOC107688980,LOC107725281,LOC107713928,LOC107713927,LOC107689178,LOC107559023)


Basic Information

Item Value
gene id tpbgb
gene name LOC107688980,LOC107725281,LOC107713928,LOC107713927,LOC107689178,LOC107559023
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5418473 ~ 5420640 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261998.1
TGGATGGAGCGCGCGGCGGGGGAGAGTCATAACAGCGCGCGCAGCGGGACAGAGGCGCGAGCCCCGAGCGGTGCACGCGAAAACATACGGCAAACCACACGATTACGGGTTTGCGGATCTACGGCGTCTTTTTAAAGCATCGGGAAGTTTAACAACAGTTCGGAGTTTTTGCACAGGAGTCGGTCGAGTGATTGGGAGACGCTAACGTTACTTTTGAAGAAACTCGCTTTGCGTTCTGGACTTGGAAAAAGAAGTGACGGTACGAACGCGCAAAGTGACGGAATCGGAGCAGGCGCGTCTCAAATCGTTTGCTTGCTACCGAGGAGCTGAAAGTTCAAAGAGCCACCCCGagtgaaagaacaaagaaaaaacatgtgAGATTTTACGTTAAACGGTTGTTTGAGAAGCGCGAGCACGTTGCTTTCGTCTCCGCGGAGAGAAATACTTTCCCGCCGCTGGGTTCGCGTCGTTTCAAAATGTCCGATGTTGGATTATTTCTTTTGCTTCAACTTCAGAGAAAACAAAGGAACATGTGTAACCTGACTCTCTGTGTTTTACTCTTCCTGACGTGTTCCTGCTCGTCCTTATCTTCATGCCCTGCCCAGTGCTCCTGCGAAACCTCGGCGGTGAGCTGTGTGAGCCAAAACTTGACATCCGTCCCACAGCCCCTTCCAGAAAACATCATCACGCTTAACATAAATGGAAACGAGATATGGAATCTGAACAGTGAATCTTTTCCCAGGCCGCTGGAGCATTTAACAAACCTTTACGCGTCTGGAAGTCAAGTGGAGCAACTGGACTCCCTGGCGTTTAAAAACTTGCCACGTTTGAAGTTGCTCGACCTCAGCAACAACAGGATTTTGGGGTTCAGCGTCGAGGCTTTGCCTAAAGACAACAAGATCGAGGTTCTAAACCTCAGCAGGTCCTTATACAATCACTCCTACGTTGGCGTGCTTGCAGATGTTTTCACGCACCGCCTGCCTAAGGTTTCCCATCTTGATCTGTCCAGTAACGACCTGGTGCTCCTTCCGGAAGGTATGTTCACGGGCTTGTCGGACCTCACCGTTCTGGATTTGAGGAACAACTCGCTTGTTGCAATCAGCAATGACACGTTTTGGAACCGGGCGCTTAAAGAGTTGGACTTGCGAGACAATGCGTTGAAAGTCCTGCCCAACGTGACCCTTGAGAAGCTCAGCTCGGTCCCCGATTTGCGAGTCAGACTCGCGGGAAACCCCTGGCGCTGCGATTGCAATATCGAGGACATGTTGATTTGGTTGGAGAGGCATCAGTTTGTGGTGGACCGATTAAATCTGACCTGTTACAGCCCGGCAGGACTAAAAAATGTCTCGCTTCTAACCTTGGAACAACCGCAGCTCTCGTGCTGGAGCGACGACGGACATGCGATGGACCGCGTGCTGGAGCCCTCCTATGTGTTCTTGGGCATGGTTCTTGCCCTCATCGGGGTCATCTTCCTTCTGGTCCTTTACCTTAACAGGAAGGGAATCAAGAGGTGGATGTACAACATCCGTGACGCGTGCAGAGATCATATGGAGGGATACCATTACAGATACGAGATCAACTCAGACCCGCGGCTAGCCAACCTCAGCCTCAACTCCGATGTGTGACGGGACACTTGCACGAATGGCACGCAACGATCAGACTCTAGCTTTGCATGAATACATATATAACTGTAGAGGTTTGCTGTGACATGCATTCTTTTCCGTCGGATAGGGCGTTAACTGGATTTTGCAAGCATCAACCCCGTTATGCTCACTGCAGGCTCGTTCATATATGCTGGCGTGTTGCTATAATGTTTCCAGTGATGCATGATCAAGTGCATACGTTTAAAATTCATGTTTGCCTTTTCATAAAAGCACAACGGACGGGACTGTGGAGGAAGTCCTGCTTTTTTCCGATGAATTACAGAGTAACCTGTCTTTTATGTCAGAactatcgttttttttttatcgtttcatttattctgcaaaaaaaaacaaaactgttccTACTgccatgcatgtatttatgtattttttcattgatGTAAAATTACGGCAATATccaatttttttatgatgagttATTGGTTTTTATATCTACATTTTGTTGGCTGGACATAGATCAACTCTTCTAGGGGATGCCCTGTTGAATTAAAAGTCTTGCACATA

Function

NR:

description
trophoblast glycoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261998.1 True 2168 mRNA 0.48 1 5418473 5420640

Neighbor

gene id symbol gene type direction distance location
rpa2 rpa2,LOC107713930 coding downstream 38511 5367332 ~ 5379962 (-)
ppp1r8b ppp1r8b,ppp1r8,LOC107564517,LOC107689150,LOC107688979,LOC107713931 coding downstream 58055 5355987 ~ 5360418 (-)
LOC122361376 NA coding downstream 58794 5359510 ~ 5359679 (-)
rrp15 rrp15,LOC107598955,LOC107737032,LOC107703929,LOC107689025 coding downstream 241661 5173650 ~ 5176812 (-)
tgfb2 tgfb2,LOC107598937,LOC106584161 coding downstream 247843 5138694 ~ 5170630 (-)
bckdhb bckdhb,LOC107688983,LOC107689156,LOC107559046,LOC107569448 coding upstream 87977 5508617 ~ 5559896 (-)
ttk ttk,LOC107713924,LOC107726228 coding upstream 139841 5560481 ~ 5570782 (-)
dctn3 dctn3,LOC107713912,LOC107559051,LOC107689179,LOC107726235,LOC107689028,LOC107569444 coding upstream 150861 5571501 ~ 5573800 (-)
mrpl51 mrpl51,LOC107726236,LOC107713917,LOC107559052 coding upstream 400351 5820991 ~ 5822850 (-)
arnt arnt,LOC107688995,LOC107689175,LOC107559034 coding upstream 413517 5834157 ~ 5850214 (-)
G109956 NA non-coding downstream 20956 5397297 ~ 5397517 (-)
G109953 NA non-coding downstream 22119 5396130 ~ 5396354 (-)
G109942 cyp4t8,LOC107559042,LOC107703932 non-coding downstream 70914 5346405 ~ 5347559 (-)
G109914 NA non-coding downstream 97177 5247238 ~ 5321296 (-)
LOC122359853 NA non-coding downstream 211054 5198791 ~ 5207419 (-)
G109944 NA non-coding upstream 15192 5435832 ~ 5437067 (-)
LOC122360242 elovl4a,LOC107726252,LOC107689158,LOC107689169,LOC107713923,LOC107688984,LOC107559048 non-coding upstream 155000 5575640 ~ 5581732 (-)
G110090 NA non-coding upstream 354207 5774847 ~ 5777041 (-)
G110093 NA non-coding upstream 358114 5778754 ~ 5808349 (-)
G110100 LOC107713901,LOC107689161,LOC107559047,LOC107689017 non-coding upstream 389331 5809971 ~ 5813684 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other downstream 172915 5232211 ~ 5245558 (-)
G109724 LOC107084717,LOC106511825 other downstream 1322969 4094757 ~ 4095504 (-)
G109600 NA other downstream 2288494 3113842 ~ 3129979 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other downstream 3454312 1741120 ~ 1964161 (-)
G109287 NA other downstream 4535721 882459 ~ 882752 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 362027 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 396400 5817040 ~ 5818618 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other upstream 481937 5902577 ~ 6184133 (-)
G110208 adamts16,LOC107757336,LOC107558631,LOC107689003,LOC107726256,LOC107657842,LOC568792 other upstream 608568 6029208 ~ 6034777 (-)
G110215 NA other upstream 676035 6096675 ~ 6099927 (-)

Expression


Co-expression Network