atg12 (atg12,LOC107692547,LOC107673043)


Basic Information

Item Value
gene id atg12
gene name atg12,LOC107692547,LOC107673043
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13144049 ~ 13146414 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262033.1
TCAGCTCAGCGCCTCTTCTTCGTGTAGTGTTGCTGCCTGCTGCGTGTCGGAGGATGTCTGACAACGCAGAGTCTCCTACAGAAAACCAAAAAGATGATCCGTCGATACAACACGCTGCCACTGAACACACGGGAGGGTCGGATGAGAAGAAAAAGAttgATGTGCTTTTGAAAGCAGTAGGTGATACGCCTATCATGAAGACCAAAAAATGGTCGGTGGAAAGAGGGAGGACAGTACAGTCCCTCGCTCAGTTTATCTCACGCTTTCTCAAACTGGAGCCTAGTGAACAACTGTTCATTTATGTCAACCAGTCTTTTGCTCCCTCACCAGACCAAGAAGTGGGTGTGCTTTTTGAgTGTTTTGGAAGTGATGGCAAACTAGTTCTCCATTACTGCAAGTCCCAGGCCTGGGGATGATCGTGCAACCGTTTTTCCTCCCCCTTTCTCCCTTTCATTCATACACCTGATATACAGTATCAAAAACATCACTCACACATCATGATTGTTTTTATAACTTATTGAGttgtcatgttattttttttgtaaataataaaatgtaaataatactgTA

Function

symbol description
atg12 Predicted to be involved in several processes, including C-terminal protein lipidation; autophagosome assembly; and autophagy of mitochondrion. Predicted to act upstream of or within autophagy. Predicted to be located in cytoplasm. Predicted to be part of Atg12-Atg5-Atg16 complex. Predicted to be active in phagophore assembly site membrane. Is expressed in brain; liver; and muscle. Orthologous to human ATG12 (autophagy related 12).

NR:

description
PREDICTED: ubiquitin-like protein ATG12

GO:

id name namespace
GO:0000045 autophagosome assembly biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K08336 ATG12; ubiquitin-like protein ATG12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262033.1 True 570 mRNA 0.43 4 13144049 13146414

Neighbor

gene id symbol gene type direction distance location
si:ch211-149k23.9 si:ch211-149k23.9,LOC107673042,LOC107598426,LOC107549453,LOC107692544,LOC108437471,LOC102779492 coding downstream 138 13136647 ~ 13143911 (-)
LOC122359945 NA coding downstream 17847 13124348 ~ 13126202 (-)
LOC122359944 NA coding downstream 20162 13120866 ~ 13123887 (-)
fdps fdps,LOC107673012,LOC107692580 coding downstream 24176 13116477 ~ 13119873 (-)
rusc1 rusc1,LOC107743195,LOC107692542,LOC107596619,LOC107707166,LOC107598429 coding downstream 27954 13100858 ~ 13116095 (-)
grwd1 grwd1,LOC107692548,LOC107549456,LOC107750005,LOC107737912,LOC107598422,LOC107673021 coding upstream 5935 13152349 ~ 13157873 (-)
zgc:174888 LOC107549460,LOC107750007,LOC107598425,LOC107692550,LOC107673023,LOC107737913 coding upstream 12388 13158802 ~ 13162784 (-)
flcn flcn,LOC107549459,LOC107692552,LOC107750008,LOC107673020,LOC107598420 coding upstream 16516 13162930 ~ 13170984 (-)
josd2 josd2,LOC107549461,LOC107750011,LOC107737925,LOC107598457,LOC107692554,LOC107672995 coding upstream 54968 13201382 ~ 13204597 (-)
pitpnc1b zgc:101640,LOC107692561,LOC107549471,LOC107737922,LOC107598395,LOC107672976,LOC107750023,LOC108437483 coding upstream 159614 13306028 ~ 13319763 (-)
G112229 NA non-coding downstream 117920 13024933 ~ 13026129 (-)
G111862 NA non-coding downstream 491643 12567205 ~ 12652406 (-)
G111860 NA non-coding downstream 532055 12557811 ~ 12611994 (-)
G111799 NA non-coding downstream 653929 12489782 ~ 12490120 (-)
G111809 NA non-coding downstream 656356 12486851 ~ 12487693 (-)
G112256 LOC107737914,LOC107549458,LOC107598419,LOC107673038,LOC107750018 non-coding upstream 41505 13187919 ~ 13200640 (-)
G112261 NA non-coding upstream 67516 13213930 ~ 13227818 (-)
G112260 NA non-coding upstream 70789 13217203 ~ 13249624 (-)
G112299 LOC107750016,LOC107549467,LOC107692576 non-coding upstream 142791 13289205 ~ 13292423 (-)
G112315 NA non-coding upstream 284730 13431144 ~ 13434295 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 765600 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 1276734 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 1732272 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 1757056 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 1857617 11269620 ~ 11286432 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 507646 13654060 ~ 13683909 (-)
G112478 NA other upstream 1088140 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 1351849 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 1436065 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 1752768 14899182 ~ 14904907 (-)

Expression


Co-expression Network