LOC122361095 (LOC107596551,LOC107699467,LOC107715090,LOC107657620,LOC107578647)


Basic Information

Item Value
gene id LOC122361095
gene name LOC107596551,LOC107699467,LOC107715090,LOC107657620,LOC107578647
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16148963 ~ 16152079 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262054.1
aaataaatcattgcGTGTTTATCTAATTGATCCGCCGATACTATGTACTGCAGAAGTACACTAGCGCCTGGGAAGTGTAGTTTCCGTGCTGTCCTGTCTCTTAACAAGCCATTCATCGTGTGATGAGAACACGTAACGCTGTTTTGTCACGCTGAGCCGAACCAAACCAAACCCGAGTGGCTGGCGGTCAGTGGCTCGCTGACCGCTCATCGGACAACATGAACCGGGCGCTCAGAAAGTCTCAGTCTCTGCGTTGCTGTTCGGTCCTCGAGgtaaaaagtaaaTATGGTGCAGAATTCAGGAGGTTTTCCCTGGACCGCTCTGAGCCTGGCAGGTATAAAGACTTTCAAAGGCTCATTGTGCGTTTACATCACCTATGGCAAATGGATGTCCTTATCGGCTATGCTGATGTCCAAGGAGAGCTGCTGCCCATCAATAATGATGACAACTTCTACAAAGCTGTGACCTCCACACAGTCTTTACTGCGTATCTTCATTCAGCTTCAAGAGGAAGCTGACCAGGCTATCATAGGTGTTGAAGATGCAACAAAACGAAAGAAACCTGTCAGCCAGAGAAAAACCCCATTCCAGATCAGCATGCCACAGAACTTCCGGCCCGTTTCGTCCATCATCGATGTGGACGTCATACCAGAATGCCACAGAAGAGTGCGTCTGTATCACCAGGGCTCAGACAGACCTCTGGGGTTTTACATTCGCGATGGTACCACTGTCAGGGTTACTCCGTACGGTCTGGAAAAGGTTCCGGGCATTTTCATCTCCCGCATAGTTCCTGGAGGACTGGCTGCTTGCACGGGACTGCTGGCCATTAATGACCAGGTCCTGGAAGTGAATGGTATTGATGTTTTGCGGAAGTCTTTGGATCAGGTAACCGACATGATGATCGCCAACAGCCACAACCTCATCATCACGGTGAAACCTGCAAACCAGCATAACAACATAAGGCGAAAAAGCTGCAGTTCCTCAAGTTCGGGACACTATTTTGATAGTGCGCACTCCATAAGCTATCCAGGGCTACCTATGATAATGAAAGCTTATGGTTTAGGTAATGGCTCTGAGAGCGAAGAGGATGCAGACGTGGTTGTCGAGAGCCCCATCAAACACCGGTCCCGACATCAGGGGTCTTCAGCACCCTCTCATTCTTCTCAGCTTTACGTTAATACTTCCTACAGGCCTCAAGTTTCTGCCAGATGGCCCAACTCACTCATTTCGGCTGCGTCCTATCACTCTCAGCCTTGTCTCGCTCATACAGCTCACACTGACCATAGCGCCGCTCTTCACAGGCATCGGACCTCCCAGCAGCATTTCGGCTGTAATCCGGTCATCAGACAGGGAAGCTCCAGTACACATGATATTCTAAACACGTGGCACGTAGATCTGAGTCGCCATTTACTGTTGCCCCAGGGGGCAATGGAGGAAGATggaattgttgttgttttgtaaaataaaatgaaaatacgcCACCCGCTTTAAACTGTACACTACAATTTATAAATTACTCTATATGTAATTACTCACATGGCAGTATCGTgatcactttttaaaattactgtGGATTCTGCATGTTGAGGAATTTTCGTATTGTCCAGCATAAAAATATACTCTGAAAAGcctttaaaaagtgtttaaaataaaaaaatttttaattcactCAGCCCCTTTTAATTCATTCCAAACCCGaatgattttcttttgaaaaaattaagGAATTTTGGAAAATGTTAGTAGTTGATGTTGATGGTGACTAATGAATTCAGTTGTATGTCTCgagaaatatttctttactCTCCACAGTGAAAGAAAATCATCAAAGTTTGGAATGAGTGAAAGTGGGTGACTGATGACAATATctttacttttgtaattttacgtttaaataaatgcaaactctGCTCA

Function

NR:

description
PREDICTED: partitioning defective 6 homolog gamma-like

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0035844 cloaca development biological_process
GO:0045176 apical protein localization biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0001841 neural tube formation biological_process
GO:0021510 spinal cord development biological_process
GO:0032154 cleavage furrow cellular_component
GO:0005634 nucleus cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262054.1 True 1913 mRNA 0.45 3 16148963 16152079

Neighbor

gene id symbol gene type direction distance location
LOC122360718 jarid2a,LOC107714830,LOC107595576,LOC107699452,LOC107593646,LOC107657689,LOC107723487 coding downstream 45308 16070539 ~ 16103655 (-)
rbfa LOC107699468,LOC107715083,LOC107596252 coding downstream 148315 15998312 ~ 16000648 (-)
prelid3a prelid3a,LOC107715058,LOC107723525 coding downstream 185255 15959669 ~ 15963708 (-)
lratd2b zgc:110182,LOC107715046,LOC107699471,LOC107723393,LOC107593723,LOC107595500,LOC107657619 coding downstream 210073 15936647 ~ 15938890 (-)
prss1 try,LOC107714673,LOC107699515,LOC107595397,LOC107657672,LOC107723506,LOC107593633 coding downstream 279752 15867304 ~ 15869211 (-)
LOC122361096 zgc:136493,LOC107699466,LOC107714862,LOC107596560 coding upstream 425 16152504 ~ 16154388 (-)
dtnbp1a LOC107723533,LOC107657692,LOC107714847,LOC107593648 coding upstream 45640 16197719 ~ 16210633 (-)
zgc:110410 zgc:110410,LOC107723576,LOC107657623,LOC107593651 coding upstream 87875 16239954 ~ 16243472 (-)
derl1 derl1,LOC107593655,LOC107657695,LOC107714924,LOC107736822,LOC107699495,LOC107595682 coding upstream 104403 16256482 ~ 16264542 (-)
tomm40 LOC107723430,LOC107593658,LOC107657699,LOC107699493,LOC108438269,LOC107714943 coding upstream 114959 16267038 ~ 16272470 (-)
LOC122361072 LOC107723533,LOC107657692 non-coding downstream 81418 16066166 ~ 16067545 (-)
LOC122360541 NA non-coding downstream 162779 15984741 ~ 15986184 (-)
G113244 LOC107715075,LOC107699469,LOC107595516,LOC107723556,LOC107593640,LOC107657683 non-coding downstream 181770 15964758 ~ 15967193 (-)
G113234 NA non-coding downstream 190299 15929222 ~ 15958664 (-)
G113236 klhl38b,LOC107723565,LOC107657680,LOC107593636 non-coding downstream 202280 15911312 ~ 15946683 (-)
G113300 NA non-coding upstream 38783 16190862 ~ 16192689 (-)
G113280 jarid2a,LOC107593646,LOC107657689,LOC107714830,LOC107699452,LOC107595576 non-coding upstream 41950 16194029 ~ 16195896 (-)
G113325 prss59.1,LOC107595716,LOC107739933,LOC107657703,LOC107735769,LOC107699485,LOC107593705,LOC101066992,LOC108431067,LOC102234122 non-coding upstream 200191 16352270 ~ 16357623 (-)
LOC122360769 NA non-coding upstream 336039 16488118 ~ 16494739 (-)
G113405 NA non-coding upstream 400529 16552608 ~ 16553858 (-)
G113267 LOC107699468,LOC107715083,LOC107596252 other downstream 7728 16139319 ~ 16141235 (-)
G113275 zgc:136493,LOC107699466,LOC107714862,LOC107596560 other downstream 135212 16012964 ~ 16013751 (-)
adnp2a LOC107714821,LOC107699502,LOC107723537,LOC107595567,LOC107657688 other downstream 142492 16001313 ~ 16006471 (-)
G113220 LOC107714743,LOC107699517,LOC107595378,LOC107657670,LOC107593630,LOC107723558 other downstream 287070 15857599 ~ 15861893 (-)
G113203 fpr1,LOC107714672,LOC107699476,LOC107593626,LOC107657616,LOC107595349,LOC107723415,LOC108429924,LOC108265369 other downstream 329877 15816979 ~ 15819086 (-)
atxn1b atxn1b,LOC107699498,LOC107595586,LOC107723489,LOC107593649,LOC107657690,LOC107736225 other upstream 66582 16218661 ~ 16228466 (-)
fam8a1b fam8a1,fam8a1b,LOC107715098,LOC107593650,LOC107595671,LOC107723574,LOC107657622 other upstream 80893 16232972 ~ 16239506 (-)
esrp1 esrp1,LOC107687807,LOC107706288,LOC107593677,LOC107657715,LOC107723447,LOC107706528,LOC107595837,LOC107687825,LOC107657630,LOC107723411,LOC107593711 other upstream 434005 16586084 ~ 16682178 (-)
onecutl onecutl,LOC107741751,LOC107663311,LOC107689849,LOC107732477 other upstream 1660291 17812370 ~ 17830977 (-)
lmna lmna,LOC107704890,LOC107598000,LOC107671682,LOC107587813,LOC107741735,LOC107723101 other upstream 2043392 18195471 ~ 18239269 (-)

Expression


Co-expression Network