LOC122361111 (atp6v1c1a,atp6v1c1,LOC107601989,LOC107729816,LOC107659089,LOC107565754,LOC107724997)


Basic Information

Item Value
gene id LOC122361111
gene name atp6v1c1a,atp6v1c1,LOC107601989,LOC107729816,LOC107659089,LOC107565754,LOC107724997
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26957641 ~ 26969940 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262081.1
CGCATGCGCAGACCTCAGCAGCCGATCAGCTGACCGTGAGTGAAGCCTTTGGAAACACTGGAGTGTCATTATGAATATCAAATCCTAAGACGGATCCCTAGTGAAGCGTGTAGTTAAAACTAGCGGGTGATCGTCGCGTCGTCTCGTTCACGTCGAAATCAGACTGTCTGTTTATCGCTCCTCAGCAGCCATGACCGAGTTCTGGTTGATCTCTGCTCCTGGAGAGAAGACCTGCCAGCAGACGTGGGACAAACTAATGACGGCCACGACTCGCACCAACAACCTCTCCACCAACAACAAGTTCAACATTCCCGATCTCAAGGTCGGGACATTAGATGTCCTGGTGGGGCTGTCGGATGAGCTGGCCAAGCTGGACGCTTTTGTCGAGAGCGTGGTGAAGAAGGTGGCTCAGTACATGGCCGACGTGTTGGAGGACAGTCGAGATAAAGTCCAGGAGAACCTGCTGGCCAACGGAGTCGATCTGGTCACTTATGTCACGAGATTTCAGTGGGACATGGCCAAGTACCCTATCAAACAATCCTTGAAGAACATTTCGGAGATCGTCTCCAAGCAAGTCTCACAGATCGACAATGACCTGAAGGCCCGCGCCGCCTACAACAACCTGAAGGGAAACCTACAGAATCTAGAGAGGAAGAACGCAGGGAGCCTGCTGACCAGGAGTTTGGCAGACATCGTCAAGAAAGACGACTTTGTGCTCGATTCTGAATACCTCATTACTATGCTGGTCGTGGTACCAAAAACAAACTACACCGAGTGGCAGCGCACTTACGAGACTCTGGCAGAAATGGTGGTGCCGCGATCTACGAATTTACTTTTCGAGGACCAGGAAAGCGGCCTGTTCACCGTCACGCTCTTCAGAAAGGCCATCGATGACTTCAGACTCAAGGCCAGAGAGAACAAGTTCACGGTCCGGGACTTCCAGTACAACGAGGAGGAAATGAAAGCCGATAAGGAGGAGATGACCAGACTCTCGACCGACAAGAAAAAGCAGTTTGGTCCGCTGGTTCGGTGGCTGAAGGTGAACTTCAGCGAGGCGTTTATCGCTTGGATCCACATCAAGGCTCTGCGGGTCTTTGTGGAATCGGTGTTGAGatacGGTCTGCTCGTCAACTTTCAAGCGATGCTGCTGCAGCCCAACAAGAAGAACATGAAGAAGCAGGAGGTCCTGTACGATCTCTACAAGCACCTGACAGCAGCGCTGGCTGCCATCATCGACCAATCCGCCATGGACATCCCCGGCTTGAACCTCAGCCAGCAAGAATACTATCCCTACGCGTACTACAAGATCGACTGCAACCTCCTGGACTTCAAGTAGAAGACGCGCTTTTAACCACGTGGCCCTTCGCTTCGCTCTctgtgaataaattaaattaaactgtatatCGCTGAGCTCTCGTTCCAGTCACCCGGCCATGCATGCTCATTCATATTCAGAGATACTCCTCCACTGACCGCAGGAGACCATCTATATCTGCCGCCCCTAGtactttgtttacattttggttttttttaaggatgtCGTTGTGTTATCACATGTGCAAGTGAACTAAACGATGCGTTTTAAGTCATTCCACTCATGTTTTGTGACGTGCAGTAGCTCCATTTGATGTCGGTGATCGGTATTATTGTGCGTGGACAGCTgtgtttttaaccttttattcTTGAAATGAACCAGTGGTCCGTTTGagcaaacacaaaatgagagagaaaaagtgttACAAAGATGCAATATAAATGTGACGTCGTGTACATTTGGTGTTCGAAGAGTTATATATGTGCGAAATTATTGTGTCATggaaccaaaatataaaattattataagtaCGTAA

Function

symbol description
atp6v1c1a Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to act upstream of or within proton transmembrane transport. Predicted to be part of vacuolar proton-transporting V-type ATPase, V1 domain. Orthologous to human ATP6V1C1 (ATPase H+ transporting V1 subunit C1).
atp6v1c1 Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in proton transmembrane transport. Located in extracellular exosome and lysosomal membrane. Biomarker of oral squamous cell carcinoma and stomach carcinoma.

NR:

description
PREDICTED: V-type proton ATPase subunit C 1-A

GO:

id name namespace
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02148 ATPeV1C, ATP6C; V-type H+-transporting ATPase subunit C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262081.1 True 1850 mRNA 0.49 15 26957641 26969940

Neighbor

gene id symbol gene type direction distance location
LOC122360494 LOC107677651,LOC107565755,LOC107729815,LOC107601969 coding downstream 68742 26878671 ~ 26888899 (-)
ubr5 ubr5,LOC107677650,LOC107659085 coding downstream 88670 26822157 ~ 26868971 (-)
fam110d si:ch211-107n13.1,LOC107688188,LOC107707635,LOC107726719,LOC107564093,LOC107552531,LOC107671482 coding downstream 642796 26299517 ~ 26314845 (-)
LOC122360092 LOC107688189,LOC107564095,LOC107707648,LOC107671448,LOC107552527,LOC107726716,LOC107552528,LOC107671449 coding downstream 683950 26270993 ~ 26273691 (-)
LOC122360606 LOC107552511,LOC107671451,LOC107707651,LOC107688191,LOC107552530 coding downstream 687496 26267933 ~ 26270145 (-)
LOC122361113 NA coding upstream 105564 27075504 ~ 27078615 (-)
spire1b spire1,LOC107565753,LOC107677663,LOC107601988,LOC107659090 coding upstream 210697 27180637 ~ 27204293 (-)
LOC122361070 tppp,LOC107659066,LOC107677661,LOC107565752,LOC107754442,LOC107601987 coding upstream 244150 27214090 ~ 27228568 (-)
zdhhc11 NA coding upstream 259846 27229786 ~ 27242739 (-)
brd9 brd9,LOC107754443,LOC107659091 coding upstream 272942 27242882 ~ 27258010 (-)
G116666 NA non-coding downstream 83281 26817032 ~ 26874360 (-)
G116670 srsf10a,srsf10b,LOC107724996,LOC107677658,LOC107729809,LOC107659087 non-coding downstream 138793 26816120 ~ 26818848 (-)
G116648 NA non-coding downstream 213852 26741576 ~ 26743789 (-)
G116647 NA non-coding downstream 217780 26739105 ~ 26739861 (-)
G116638 NA non-coding downstream 284262 26672924 ~ 26673379 (-)
G116696 NA non-coding upstream 183406 27153346 ~ 27213613 (-)
G116700 NA non-coding upstream 185155 27155095 ~ 27157490 (-)
G116710 NA non-coding upstream 269046 27238986 ~ 27240139 (-)
G116711 NA non-coding upstream 270675 27240615 ~ 27241091 (-)
G116721 NA non-coding upstream 329554 27299494 ~ 27307565 (-)
G116677 NA other downstream 1807 26954220 ~ 26955834 (-)
G116668 NA other downstream 81031 26874398 ~ 26876610 (-)
G116632 fabp10a,LOC107677662,LOC103026354 other downstream 144667 26810317 ~ 26812974 (-)
G116654 myom3,LOC107659064,LOC107729819 other downstream 148495 26807120 ~ 26809146 (-)
LOC122360302 man1c1,LOC107713850,LOC107564091,LOC107665908,LOC107729795,LOC108426368,LOC101882461,LOC107601975 other downstream 450589 26421718 ~ 26507052 (-)
LOC122360878 NA other upstream 24034 26993974 ~ 26998359 (-)
G116745 plekhg4b,LOC107569053,LOC107659069,LOC107601962,LOC108426379,LOC107729806 other upstream 388767 27358707 ~ 27360829 (-)
LOC122360079 NA other upstream 550250 27520190 ~ 27579866 (-)
LOC122359885 rab25b,LOC107756889,LOC107592474,LOC107688282,LOC107671436,LOC107592134 other upstream 652689 27622629 ~ 27627660 (-)
G116836 rpz,LOC107688232,LOC107592467,LOC107728474,LOC107726667,LOC107671398 other upstream 737776 27707716 ~ 27804770 (-)

Expression


Co-expression Network