tsnare1 (tsnare1,si:ch211-208k15.1,LOC107679652,LOC101472715)


Basic Information

Item Value
gene id tsnare1
gene name tsnare1,si:ch211-208k15.1,LOC107679652,LOC101472715
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22419870 ~ 22523750 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262106.1
TACAGAGTCATGTGATGTTGTGAGCCGGGGTTGAATCTGAGAGGTTCTCTTGCGTCTGATGTGAGTGCTAAGTGCTCTCCCTCTCAAGAAAAAGGaCTAGACCCATTATTGGAGGACCCAAAATGTCTTACGGATCCATTGACGCGGGATCGTTTGGAAGCAGAAATCCATTTGGTGGACCCACAAGGCAGGGATACCAGCCAGTAGCTACGCAAGTCAGTCCCTCCGAGCTGCAAGACGTTTTCCAGGAAACCTCCTCTAACATCTTCCAGATCAATGCTAACGTGGTAACACTAGAGAAAAACCTTCAGTCGCTGGGAACATCCAGAGACACAGCAGAGCTACGCCAGAGTTTACATTCCACACAGCAGCAAACCAATAAAGTCATAACAAGCACGAGCCAACTTGTTAAACAACTCACTGACATCATCAGCGGGTCTTCACGGCAAGACAGGCTTCGTCTGACAAGACTCAAGACAGAGCTATCAGATTCTGTGCAGCGTTATGGAGACCTGCAGAAGAAAATTGCAGATCGTTCAAGGGCCTTGCTTCCTCCTGCACAAAAGGACAGGAAACAGAGCCTACAGACTCCTTTCAGTGAACTGGTTGAAGAGGGGCCGTTGTTCGGAGCAGAGGAGCAGAGCATTGAGGGTGACGGTCAAGCATTCCTATCAGAGATCAGTGAAGAAGATGTGGAGATCCTGAGGCAGAGAGAAGAGGCACTACTGCAGATTGAGagaGACATGCTGGACGTCAATCAGATTATGAAGGACTTGGCCAGCATGGTGCATGAACAAGGAGACACCATAGACAGCATTGAAGACTACATTCAGACCACGTCGTCGCACGTGGAATCAGCCAATCAGGAGCTTGCAAAAGCCAGTCATTATCAGAGATCTCTGTTTCGACTCTGCTGTGATCACTCCTCAACTTCccagcaaaataaaagtctgtacGTAAAGGTCCACATGCGCTCACTCCCTTTCTTCTTATCTCTGTCTGTACTTCTGTCAGATTGTGTTTTGTGTATGCTtgtatgaaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactgtgcaTTAAAAGaatctatttttaatcagtGCTTTGTACTGTAATGTGCAATTAATTGCTCCTTACCTCTTCAAAGTGGACTCAAATCAAAGAACAAAATCCAAATAGACTCAATGTTGCTATagactttaaaatatctttctcCGTCATTTATAGCTGATTCTTGAGTACAGAGACAAAACTGGCTGTGATTTTGCTTGTCTGTAATTCAATTTGGATATTAGAAAGATAGTTTCAAACTAATTATTTCTAACATATTGAGATTATGAGAAAAATATAAgcacaataaatgaaattttacatttatgtaaagaTCATCGAATTTATTTCCAAGTctaaatgttgattttattttctgtgttttgtctcATGGCTCAAGAATCAGTCTTATGCTAGTTCTCATATCAGCTCATATCAATCTTTTGCTATTACACTGTGttcaaaatgtgcatatttatttttttaaggtgcAAATATATAATCTGTGACAAGTGTAACAGTGACATTCTTTTAGGAACATTCTTTGTAAGGCAATTTATTTGTTACAAAGAAACATAACCTGTGTATAGTTATCTTTAAATATTGTAACCTACTGTCTGTGTTTACCAAAAACTGACTATTATAAACAGACATTTGAATGCAGCAGGCAGGCTACCATTATAGAACACCTGTTGAGAGAGAAAACTGACTTATTGTTATCATTTGCATAaccataaaattataattttttttaatgacgtAATATTTCAAAGATTCAGTATCGTCTTGTATTGCACTGCTCTTAATATCCATTATTTAAGATGGTTTCTAATGGTTCATTTGCtggcttttattaaatagtacaacgtaaaaaaaaaaaaaa
>XM_043262107.1
TACAGAGTCATGTGATGTTGTGAGCCGGGGTTGAATCTGAGAGGTTCTCTTGCGTCTGATGTGAGTGCTAAGTGCTCTCCCTCTCAAGAAAAAGGaCTAGACCCATTATTGGAGGACCCAAAATGTCTTACGGATCCATTGACGCGGGATCGTTTGGAAGCAGAAATCCATTTGGTGGACCCACAAGGCAGGGATACCAGCCAGTAGCTACGCAAGTCAGTCCCTCCGAGCTGCAAGACGTTTTCCAGGAAACCTCCTCTAACATCTTCCAGATCAATGCTAACGTGGTAACACTAGAGAAAAACCTTCAGTCGCTGGGAACATCCAGAGACACAGCAGAGCTACGCCAGAGTTTACATTCCACACAGCAGCAAACCAATAAAGTCATAACAAGCACGAGCCAACTTGTTAAACAACTCACTGACATCATCAGCGGGTCTTCACGGCAAGACAGGCTTCGTCTGACAAGACTCAAGACAGAGCTATCAGATTCTGTGCAGCGTTATGGAGACCTGCAGAAGAAAATTGCAGATCGTTCAAGGGCCTTGCTTCCTCCTGCACAAAAGGACAGGAAACAGAGCCTACAGACTCCTTTCAGTGAACTGGTTGAAGAGGGGCCGTTGTTCGGAGCAGAGGAGCAGAGCATTGAGGGTGACGGTCAAGCATTCCTATCAGAGATCAGTGAAGAAGATGTGGAGATCCTGAGGCAGAGAGAAGAGGCACTACTGCAGATTGAGagaGACATGCTGGACGTCAATCAGATTATGAAGGACTTGGCCAGCATGGTGCATGAACAAGGAGACACCATAGACAGCATTGAAGACTACATTCAGACCACGTCGTCGCACGTGGAATCAGCCAATCAGGAGCTTGCAAAAGCCAGTCATTATCAGAGGCAgctgaggaggaggaagtgTTATCTGCTAATCGCTGGAGTGCTGCTTCTTACTTTGcttatcattattattgcagTCTCAGCCAGAAAATGAGAGCAAGACCACAGAGATCTCTGTTTCGACTCTGCTGTGATCACTCCTCAACTTCccagcaaaataaaagtctgtacGTAAAGGTCCACATGCGCTCACTCCCTTTCTTCTTATCTCTGTCTGTACTTCTGTCAGATTGTGTTTTGTG

Function

symbol description
tsnare1 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in endomembrane system. Predicted to be integral component of membrane. Orthologous to human TSNARE1 (t-SNARE domain containing 1).

NR:

description
t-SNARE domain-containing protein 1-like

GO: NA

KEGG:

id description
K13814 TSNARE1; t-SNARE domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262106.1 True 1956 mRNA 0.39 11 22419870 22523750
XM_043262107.1 False 1137 mRNA 0.48 12 22420799 22523750

Neighbor

gene id symbol gene type direction distance location
snrnp48 LOC107679653,LOC107551179,LOC107756216,LOC107600666 coding downstream 68827 22347650 ~ 22351043 (-)
zgc:113232 zgc:113232,LOC107705846,LOC107666867,LOC107600626,LOC107756222,LOC108437324 coding downstream 75770 22335163 ~ 22344100 (-)
cd83 cd83,LOC107705228,LOC107666866 coding downstream 87836 22330179 ~ 22332034 (-)
emc2 emc2,LOC107600623,LOC107666844,LOC107679651 coding downstream 211266 22179651 ~ 22208604 (-)
trhra trhra,LOC107600665,LOC107705826,LOC107666857,LOC107551182,LOC107679641,LOC107713802 coding downstream 290361 22124696 ~ 22129509 (-)
mrap2a mrap2,mrap2a,LOC107705305,LOC107681427,LOC107556088,LOC107697221 coding upstream 239454 22763204 ~ 22767288 (-)
plekho1b plekho1b,LOC107705315,LOC107681431,LOC107588474,LOC107755867,LOC107556112,LOC107697224 coding upstream 255485 22779235 ~ 22797020 (-)
si:dkey-23o4.6 LOC107681430,LOC107705890,LOC107697223,LOC107756193,LOC107556114 coding upstream 288819 22812569 ~ 22815095 (-)
LOC122359864 LOC107705376,LOC107704993,LOC107755727,LOC107700703 coding upstream 392217 22915967 ~ 22929917 (-)
LOC122359931 decr1,LOC107704989,LOC107705494,LOC107756153,LOC107700707 coding upstream 454175 22977925 ~ 22982891 (-)
G115262 NA non-coding downstream 182804 22230240 ~ 22237066 (-)
G115170 NA non-coding downstream 545819 21873826 ~ 21874051 (-)
G115155 NA non-coding downstream 594433 21825198 ~ 21825437 (-)
G115098 NA non-coding downstream 1030723 21388815 ~ 21389147 (-)
G115051 NA non-coding downstream 1088512 21331012 ~ 21331358 (-)
G115335 NA non-coding upstream 159677 22683427 ~ 22683638 (-)
G115496 NA non-coding upstream 250016 22773766 ~ 22774032 (-)
G115536 bnipl,LOC107755792,LOC107556108,LOC107755808 non-coding upstream 361965 22885715 ~ 22888001 (-)
G115548 LOC107704994,LOC107705391,LOC107588482,LOC107755744,LOC107700704,LOC107556105 non-coding upstream 387129 22910879 ~ 22911323 (-)
G115559 pnp4b,LOC107704990,LOC107700705,LOC107705461,LOC107755717,LOC107588484,LOC107556080,LOC108437351 non-coding upstream 434934 22958684 ~ 22960933 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 330778 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 451335 21964855 ~ 21968535 (-)
G115149 NA other downstream 616066 21801475 ~ 21803804 (-)
G115141 NA other downstream 714911 21704018 ~ 21704959 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other downstream 805667 21605958 ~ 21614203 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other upstream 368352 22892102 ~ 22901187 (-)
G115554 NA other upstream 408877 22932627 ~ 22933967 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 996058 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 1059243 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 1144315 23668065 ~ 23675345 (-)

Expression


Co-expression Network