rbm8a (rbm8a,LOC107671476,LOC107592456,LOC107592145)


Basic Information

Item Value
gene id rbm8a
gene name rbm8a,LOC107671476,LOC107592456,LOC107592145
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18977536 ~ 18980626 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262108.1
CATGCGCCCAGCCACACGCTCgctcgctcactcactcactcgcaaTCAGGCATCATGGCGGACGTACTGGATCTACATGAAGCGGGAGGTGAAGACTTTCCTATGGACGAGGATGGTGACGAGAGCATTCACAAGTTGAAAGAGAAAGCCAAGAAAAGGAAAGGTCGCGGGTTCGGGTCTGAGGAGGGAGCGAGGTCTAGAGTCAGAGAGGACTACGACACAGTCGAACAGGATGGAGATGAGCCTGGGCCTCAGAGATCCGTTGAAGGATGGATTCTTTTTGTGACTGGTGTGCATGAGGAGGCGACGGAAGAGGACGTCCACGATAAGTTTGCAGAATACGGAGAGATTAAAAACCTGCATTTAAATTTGGACAGGAGAACCGGTTACCTTAAGGGCTATGCGCTGGTGGAGTACGAGACCTATAAAGAAGCCCAGGCAGCGATGGAAGGGCTGAATGGCCAGGAACTGATGGGGCAACCTATCAGCGTTGACTGGTGCTTTGTAAGAGGACCTCCTAAGAGCAAGAGGAGGGGCGGGAGAAGACGCAGCAGGAGCCCTGACAGGCGGCGACGTTGATTTTTCCCCAGTTCATGACTCCAGTGTCTGTTTCCCAGCCAGGCGGCATTGTTTTTCAAGACAGTTTGGAGTCAGATtggagtgtctgtgtgtgtatctctttAAATTGACgattttagtgcttttgagaGGGGGTGTCTTAATTGTTAGTTATTTGCAACTGTCTGAAGGTCTTTTGTTAAAGAATGGCAGATGCTGCCGAAGCATACATGTTGAAGCTGACGGTGTTTACACTGCAGATttatgtaccttttttttttttttttttgtacaaagtGGCAGTACACTTAAATGCCATGTAATTCATACGTTGAAACCTGTTATGAGTAGTGATTTGTATATTTCCAATAAATTAATTTGGTTTGA

Function

symbol description
rbm8a Predicted to enable mRNA binding activity. Predicted to be involved in RNA splicing and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA metabolic process; mRNA transport; and regulation of translation. Predicted to be located in nucleus. Predicted to be part of U2-type catalytic step 1 spliceosome and exon-exon junction complex. Human ortholog(s) of this gene implicated in thrombocytopenia-absent radius syndrome. Orthologous to human RBM8A (RNA binding motif protein 8A).

NR:

description
RNA-binding protein 8A isoform X1

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006417 regulation of translation biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0051028 mRNA transport biological_process
GO:0016607 nuclear speck cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12876 RBM8A, Y14; RNA-binding protein 8A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262108.1 True 945 mRNA 0.47 6 18977536 18980626

Neighbor

gene id symbol gene type direction distance location
otud7b otud7b,LOC107726676 coding downstream 843 18954329 ~ 18976693 (-)
mtmr11 mtmr11,LOC107592457,LOC107688241,LOC107726680,LOC107671475,LOC107592143 coding downstream 26598 18928081 ~ 18950938 (-)
sv2a sv2a,LOC107592458,LOC107688240 coding downstream 61080 18884553 ~ 18916456 (-)
bola1 bola1,LOC107592543,LOC107671409 coding downstream 93839 18881827 ~ 18883697 (-)
nr2f5 nr2f5,LOC107592459,LOC107592141,LOC107726692,LOC107671473,LOC103038004,LOC108433883,LOC108256176,LOC105891836,LOC105005680,LOC100380645 coding downstream 117792 18845744 ~ 18859744 (-)
paqr6 paqr6,LOC107728479,LOC107688246,LOC107726661,LOC107671432,LOC107592147 coding upstream 75531 19056157 ~ 19074810 (-)
smg5 smg5,LOC107728478,LOC107688247,LOC107726659,LOC107671430 coding upstream 98327 19078953 ~ 19094738 (-)
syngap1b syngap1b,syngap1,LOC107592452,LOC107726670,LOC107688248,LOC108433893,LOC106605281,LOC106581894,LOC101464846,LOC102301914,LOC102194363 coding upstream 115129 19095755 ~ 19195429 (-)
phf1 phf1,LOC107592451,LOC107665654,LOC107592148,LOC107726675,LOC108433894 coding upstream 217225 19197851 ~ 19211186 (-)
dnase2 dnase2,LOC107666875,LOC107665653,LOC107592150,LOC107592517 coding upstream 263316 19243942 ~ 19249649 (-)
G114259 LOC107666800,LOC107719142,LOC107592439 non-coding downstream 236707 18739754 ~ 18740829 (-)
LOC122360941 LOC107600493,LOC107719147,LOC107592185,LOC107685964,LOC107666785 non-coding downstream 289141 18687166 ~ 18688395 (-)
G114231 NA non-coding downstream 428597 18548188 ~ 18548939 (-)
LOC122360486 NA non-coding downstream 432856 18528871 ~ 18544680 (-)
G114075 NA non-coding downstream 601922 18373968 ~ 18375614 (-)
LOC122360016 apoa2,LOC107688286,LOC107728486 non-coding upstream 4777 18985403 ~ 18987926 (-)
G114399 NA non-coding upstream 12236 18992862 ~ 19063171 (-)
G114401 ntrk1,LOC107728446,LOC107592455,LOC107688245,LOC107671431,LOC107592146 non-coding upstream 32029 19012655 ~ 19041766 (-)
G114430 NA non-coding upstream 225493 19206119 ~ 19262830 (-)
G114458 NA non-coding upstream 299802 19280428 ~ 19283527 (-)
rpz rpz,LOC107688232,LOC107728474,LOC107592467,LOC107671470,LOC107592140,LOC107726666,LOC107688233 other downstream 156426 18812238 ~ 18821110 (-)
LOC122360940 fli1,LOC107692484,LOC107709558,LOC107656981 other downstream 279129 18684573 ~ 18698407 (-)
LOC122360747 plekha8,LOC107684546,LOC107745377,LOC107743161,LOC107596648,LOC107550836 other downstream 306262 18669607 ~ 18671274 (-)
G114236 LOC101883708,LOC105900568,LOC106574835 other downstream 326927 18649519 ~ 18650609 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other downstream 457249 18492626 ~ 18520287 (-)
cd22 LOC107728466,LOC107592448,LOC107666891,LOC107709614,LOC107686701 other upstream 436336 19416962 ~ 19421094 (-)
dpys dpys,LOC107728457,LOC107686378,LOC107666745 other upstream 615806 19596432 ~ 19657724 (-)
G114715 NA other upstream 1186169 20166795 ~ 20177758 (-)
G114793 NA other upstream 1461339 20441965 ~ 20452450 (-)
scn1ba scn1b,scn1ba,LOC107666845,LOC107737825,LOC107719111,LOC107686587 other upstream 1655499 20636125 ~ 20650937 (-)

Expression


Co-expression Network