LOC122360016 (apoa2,LOC107688286,LOC107728486)


Basic Information

Item Value
gene id LOC122360016
gene name apoa2,LOC107688286,LOC107728486
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18985403 ~ 18987926 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252754.1
GGGGgggtgtctgtctgtcagcTTTGAGTAAAAAACATAACCCATGTCTGCAAAACCTACCCATTAGTATCCACCACTGACCAGAGATGCAGAGCTTTCTTTGCACCCGGGGCCCTTCAGGACCGGACGTTTTTTCAAGAGATGAGACTCCTCGGGAAGCGTTGCTCCTATAGTCTTTCCAAAGCAAACCTGTAGCCTTGTTTCCCAATTTTCAGCTAAAGCACCTTGGAGTTTGTAGCAGTACTCCATTCATCTGGcctctgttttattttcaagtgCTGCAGAGACTCCAATTATCAGCGGGAGCCttattttttcttccttttctttgcctatttttctttctttttcgtCAAAGGCAAGCCCTTTCAACTATAAACTGATCCCTGTGAGAGACGCACAATGGCCGTTCGTGGTCACCAGCTAGTCTTAGAATGAATGTTTCAGAGCATATGGACCAAGGAAAAGTAGATTAATGAGACAGAAAAAGGACAATCGTTGATTTGTATGTGCTTGTACATCATTCTGGCAGGATGGCTTTGCTCTGGTCAGCCACAAACTTGAGGACATCTTCAACATGAGTCTGGACCAAGCCGGCGAGGGGGGCGACCTGAGCCTGGACGGAGGCGGCCAGAGGCTTGATGTGGTCTTCAATGTTGCTGGAGAGGGGCTTCAGCTGCTCCTGGAGCTTCTCAACCATGGGCTGAAACTGGGCTCTACTCTGCTCCAATTTCACAGAGACAAAGAAGATAATGAAGCTCATGGACTTACTTGGCCTTGTTGGCCAGCTCGGGGCCCTCAACGTTCTTCAGCTTGTCCACGAGATCCTGGAAATACTTGGCGATCTTCTCCAGCTCAGCAGGAGCGTCTC
>XR_006252755.1
GCAGGGGgggtgtctgtctgtcagcTTTGAGTAAAAAACATAACCCATGTCTGCAAAACCTACCCATTAGTATCCACCACTGACCAGAGATGCAGAGCTTTCTTTGCACCCGGGGCCCTTCAGGACCGGACGTTTTTTCAAGAGATGAGACTCCTCGGGAAGCGTTGCTCCTATAGTCTTTCCAAAGCAAACCTGTAGCCTTGTTTCCCAATTTTCAGCTAAAGCACCTTGGAGTTTGTAGCAGTACTCCATTCATCTGGcctctgttttattttcaagtgCTGCAGAGACTCCAATTATCAGCGGGAGCCttattttttcttccttttctttgcctatttttctttctttttcgtCAAAGGCAAGCCCTTTCAACTATAAACTGATCCCTGTGAGAGACGCACAATGGCCGTTCGTGGTCACCAGCTAGTCTTAGAATGAATGTTTCAGAGCATATGGACCAAGGAAAAGTAGATTAATGAGACAGAAAAAGGACAATCGTTGATTTGTATGTGCTTGTACATCATTCTGGAGGCAGGATGGCTTTGCTCTGGTCAGCCACAAACTTGAGGACATCTTCAACATGAGTCTGGACCAAGCCGGCGAGGGGGGCGACCTGAGCCTGGACGGAGGCGGCCAGAGGCTTGATGTGGTCTTCAATGTTGCTGGAGAGGGGCTTCAGCTGCTCCTGGAGCTTCTCAACCATGGGCTGAAACTGGGCTCTACTCTGCTCCAATTTCACAGAGACAAAGAAGATAATGAAGCTCATGGACTTACTTGGCCTTGTTGGCCAGCTCGGGGCCCTCAACGTTCTTCAGCTTGTCCACGAGATCCTGGAAATACTTGGCGATCTTCTCCAGCTCAGCAGGAGCGTCTC
>XR_006252756.1
GTGTGCAGGGGgggtgtctgtctgtcagcTTTGAGTAAAAAACATAACCCATGTCTGCAAAACCTACCCATTAGTATCCACCACTGACCAGAGATGCAGAGCTTTCTTTGCACCCGGGGCCCTTCAGGACCGGACGTTTTTTCAAGAGATGAGACTCCTCGGGAAGCGTTGCTCCTATAGTCTTTCCAAAGCAAACCTGTAGCCTTGTTTCCCAATTTTCAGCTAAAGCACCTTGGAGTTTGTAGCAGTACTCCATTCATCTGGcctctgttttattttcaagtgCTGCAGAGACTCCAATTATCAGCGGGAGCCttattttttcttccttttctttgcctatttttctttctttttcgtCAAAGGCAAGCCCTTTCAACTATAAACTGATCCCTGTGAGAGACGCACAATGGCCGTTCGTGGTCACCAGCTAGTCTTAGAATGAATGTTTCAGAGCATATGGACCAAGGAAAAGTAGATTAATGAGACAGAAAAAGGACAATCGTTGATTTGTATGTGCTTGTACATCATTCTGagAACAAAATGGAAGAGAACTAAGAAGGATTCCTGTGGTTTTACTGAGGAGGCAGGATGGCTTTGCTCTGGTCAGCCACAAACTTGAGGACATCTTCAACATGAGTCTGGACCAAGCCGGCGAGGGGGGCGACCTGA

Function

symbol description
apoa2 Acts upstream of or within chordate embryonic development; epiboly involved in gastrulation with mouth forming second; and nuclear division. Is expressed in liver and yolk syncytial layer.

NR:

description
PREDICTED: apolipoprotein A-II

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252754.1 False 871 lncRNA 0.48 4 18985403 18987919
XR_006252755.1 True 877 lncRNA 0.49 4 18985403 18987922
XR_006252756.1 False 672 lncRNA 0.46 3 18985829 18987926

Neighbor

gene id symbol gene type direction distance location
rbm8a rbm8a,LOC107671476,LOC107592456,LOC107592145 coding downstream 4777 18977536 ~ 18980626 (-)
otud7b otud7b,LOC107726676 coding downstream 8710 18954329 ~ 18976693 (-)
mtmr11 mtmr11,LOC107592457,LOC107688241,LOC107726680,LOC107671475,LOC107592143 coding downstream 34465 18928081 ~ 18950938 (-)
sv2a sv2a,LOC107592458,LOC107688240 coding downstream 68947 18884553 ~ 18916456 (-)
bola1 bola1,LOC107592543,LOC107671409 coding downstream 101706 18881827 ~ 18883697 (-)
paqr6 paqr6,LOC107728479,LOC107688246,LOC107726661,LOC107671432,LOC107592147 coding upstream 68231 19056157 ~ 19074810 (-)
smg5 smg5,LOC107728478,LOC107688247,LOC107726659,LOC107671430 coding upstream 91027 19078953 ~ 19094738 (-)
syngap1b syngap1b,syngap1,LOC107592452,LOC107726670,LOC107688248,LOC108433893,LOC106605281,LOC106581894,LOC101464846,LOC102301914,LOC102194363 coding upstream 107829 19095755 ~ 19195429 (-)
phf1 phf1,LOC107592451,LOC107665654,LOC107592148,LOC107726675,LOC108433894 coding upstream 209925 19197851 ~ 19211186 (-)
dnase2 dnase2,LOC107666875,LOC107665653,LOC107592150,LOC107592517 coding upstream 256016 19243942 ~ 19249649 (-)
G114259 LOC107666800,LOC107719142,LOC107592439 non-coding downstream 244574 18739754 ~ 18740829 (-)
LOC122360941 LOC107600493,LOC107719147,LOC107592185,LOC107685964,LOC107666785 non-coding downstream 297008 18687166 ~ 18688395 (-)
G114231 NA non-coding downstream 436464 18548188 ~ 18548939 (-)
LOC122360486 NA non-coding downstream 440723 18528871 ~ 18544680 (-)
G114075 NA non-coding downstream 609789 18373968 ~ 18375614 (-)
G114399 NA non-coding upstream 4936 18992862 ~ 19063171 (-)
G114401 ntrk1,LOC107728446,LOC107592455,LOC107688245,LOC107671431,LOC107592146 non-coding upstream 24729 19012655 ~ 19041766 (-)
G114430 NA non-coding upstream 218193 19206119 ~ 19262830 (-)
G114458 NA non-coding upstream 292502 19280428 ~ 19283527 (-)
G114462 NA non-coding upstream 305067 19292993 ~ 19294087 (-)
rpz rpz,LOC107688232,LOC107728474,LOC107592467,LOC107671470,LOC107592140,LOC107726666,LOC107688233 other downstream 164293 18812238 ~ 18821110 (-)
LOC122360940 fli1,LOC107692484,LOC107709558,LOC107656981 other downstream 286996 18684573 ~ 18698407 (-)
LOC122360747 plekha8,LOC107684546,LOC107745377,LOC107743161,LOC107596648,LOC107550836 other downstream 314129 18669607 ~ 18671274 (-)
G114236 LOC101883708,LOC105900568,LOC106574835 other downstream 334794 18649519 ~ 18650609 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other downstream 465116 18492626 ~ 18520287 (-)
cd22 LOC107728466,LOC107592448,LOC107666891,LOC107709614,LOC107686701 other upstream 429036 19416962 ~ 19421094 (-)
dpys dpys,LOC107728457,LOC107686378,LOC107666745 other upstream 608506 19596432 ~ 19657724 (-)
G114715 NA other upstream 1178869 20166795 ~ 20177758 (-)
G114793 NA other upstream 1454039 20441965 ~ 20452450 (-)
scn1ba scn1b,scn1ba,LOC107666845,LOC107737825,LOC107719111,LOC107686587 other upstream 1648199 20636125 ~ 20650937 (-)

Expression


Co-expression Network