Fish Transcriptome and Expression Database

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model fish

XLOC_006722 (BX537123.1)

Basic Information

Item	Value
gene id	XLOC_006722
gene name	BX537123.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007124.7
NCBI id	CM002897.2
chromosome length	52186027
location	31694931 ~ 31695047 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012947
TAATGtggccatatcaccctgcagctcaagacCGCTTACTCACTATAGCTAAGCAGGCTTGAGCCTGGTCAATACCTGCATGGGAGACCACACAGAAAAActtggttgctgctggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000106504

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00012947	True	117	rRNA	0.50	1	31694931	31695047

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_006721	trmt5	coding	downstream	7006	31681988 ~ 31687925 (-)
XLOC_006720	six4a	coding	downstream	47608	31636732 ~ 31647323 (-)
XLOC_006719	six1a	coding	downstream	72736	31619961 ~ 31622195 (-)
XLOC_006718	BX537123.2	coding	downstream	115367	31579448 ~ 31579564 (-)
XLOC_006717	dhrs7	coding	downstream	150566	31536709 ~ 31544365 (-)
XLOC_006723	NA	coding	upstream	104985	31800032 ~ 31800406 (-)
XLOC_006724	sertad4	coding	upstream	110777	31805824 ~ 31829786 (-)
XLOC_006725	syt14a	coding	upstream	148964	31844011 ~ 31888487 (-)
XLOC_006726	utp25	coding	upstream	230207	31925254 ~ 31938640 (-)
XLOC_006727	NA	coding	upstream	255110	31950157 ~ 31955798 (-)
XLOC_006471	BX537274.2	misc	downstream	21430026	10264741 ~ 10264905 (-)
XLOC_006338	rn7sk	misc	downstream	30868706	825904 ~ 826225 (-)
XLOC_006710	CR931802.1	non-coding	downstream	489738	31193485 ~ 31205193 (-)
XLOC_006708	CR931802.2	non-coding	downstream	567885	31126449 ~ 31127046 (-)
XLOC_006707	NA	non-coding	downstream	572093	31102907 ~ 31122838 (-)
XLOC_006706	NA	non-coding	downstream	602531	31089586 ~ 31092400 (-)
XLOC_006728	NA	non-coding	upstream	288014	31983061 ~ 31999012 (-)
XLOC_006729	BX470107.1	non-coding	upstream	328441	32023488 ~ 32063016 (-)
XLOC_006730	NA	non-coding	upstream	374851	32069898 ~ 32455993 (-)

Expression

Co-expression Network