G11012


Basic Information

Item Value
gene id G11012
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 17032576 ~ 17034843 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU12140
AATCCGTTTAATTTTAGAGTGGACATGAGGAATAAATTAATATAATAAATATCTCTTCAAAGTGCTATGTACAGATGATGCCATATTCAGGGGTAGTATCAGCAGGAGATGAACTGCCTCTCACTGGATCCCTTTTAAAGCCATTGTGAGGATCAGATGAATAATATATGATTCTGTTTGGGGGATTAATCCAACACTGAGTAAGGTAACATGACAGTCTTCACAGAGGGTGCTCCGGTGCCTCTAGTGGACATCAGATGCAACTGCAAGCAGACAGTTGTTCATGACGGACACTGCACCAACTCCTCTCTGCACCTTTGAATCTTTCAGTAAGTCCTTCATCACATGGTTATAAAGTAACCAACACAAGAACAATGCAGTTCTGAATCTGCATCATTACAGTGTCTTCGATATCCACCACCACCCAGTGGCTCCAAAGAGTATTTGGACATTTAAGACACAATTAAAAATGTATGAATGTCACTGCATTAATAAATAAATATCAATCCAACCAGCATCTGCAAACAAATGTTTGACAAGTAGAAAGCATCACTATACTTTTTTTCAGTAGTCGACCGATATAGCTTTTTTGATGGTTGATGGCAATGCTGATATCTTCGAGAGCAGGGTGGCTAATGGTTGATATAAAACCAATATATTTAAAGATATTTATTATAAAGACGAAATTTCTATTTATTTTATGTAATATTAGAAATAATTTGAAAATTAATCAATATGCAAAAAAAGTAAATCTGTACAATAAAAAGCAACTTCTTGATTCAGTAATCAAATTATAGTATTTTTTCACAAAAAAGGACGTAAGCACTGAAACCAGTGCGCTCAGTAATCTGGCAAGTCTGTGTGTACTGGGAATCATATTTTCTCAAACGCTAATCTTATATATAGCATCGTAGTTTGAAGTGAATAAATTAACATTTCATGTGTTTTCAGTGCAGGGTTGCCAGATTTTCACGACAAAACCCTCCCAATTGCTACTCAAAACCCAATCGCGTTTCGTGGGGTGGGTCCACGGTAAAAATTGCGTTCCAGGGGGTAAATATCATGTTATTTGGGGTCGCTCCAACCCGCGGACAAAAAAACCTGCGGCAAAAGTGTTAAAATAGCCCAATTCTGCGGGAAAATTGCGGACTTGGCAACACTGTTCCAGTGACAACAGAACTCTCCTTTCCGCATAGAATTTGGAGAATTATGTGTCTGCCAACATTTATCAGGCAAACAGAAAAACATTTCAGCTGTTGCAAATATTAAAAAAGAGACAATTATCAGCATTGGCAATATATTAGCCGACCCCTTTATGTGAAAAGTTATGCTTGGAAAGTGTATTGGTGCTTTTATAATGTCACTTGGATTAATATTTTATTACCAATGCATTATTTTTTATAGAACATTATGTTGTGTCCTTAGTGTCCAAATACTTTTTAGATCCACTGTACAAATTTCAAAAACAATAAAACTGTTCATCAAGTATTAATAAAATGCAAAAGCAAGAATTATGCAAGAATGTTTTGTAAGATCTTGTCTTTAAGTCTGCATATTAGTCATCTCAATCTGGGAACCAGTGCAAACGAGCTTTGACTCATAAAACAAGTAAAACTCCAAATATTCTCAGTTTCTTCAGTAGTAAGACAGTGAAGCAGGCAAGTAGTACTAGGGCTGCCCATTTCGAAGGACAGCTGAGGTGTTGATCCAAGCGGTAATTGCAGGAAACAGTGCACTCCAGCAGTAGCCATGTTTCTGCCTGCCCCTGCAGCTCTTCTCTCATTGGATAAAAAGATCTCCAACAGTAAGAGCCCTGGGCAAAGCAGAGATCAAGTATACGGACGACCACTCCACAGCAGGGCCCAAGCACCACTCCAGTACATACACCAGTCAAATGACGCATCAAACAGCAGCCATCCGCCCCCTCACGTATGAAGGGCCCTTCAGGGAAAGTGCTGTGTGTGTTTGGATACTGGCTAGAAGACTCATATCAGCAGGAGATGATGTTCTTTCATGGATATTATTCACAGCTAGCGATAAGGGAAGGTGGGTGAGGCGATCACAGAGGGGAGGATGGCAAGGTAGTTGGAGGGGACGTAGCCTCTCTGGCCACGCGCCTCCACCAGACTCCATTCCTTGTTTCCACGCTTATCGTGAGGCTCCACCACCCGCACCGGCTCACCAGCCCTCAGAGAAAGCTCCTGACTGCTCCTCGCCGTGAAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU12140 True 2224 lncRNA 0.40 2 17032576 17034843

Neighbor

gene id symbol gene type direction distance location
CI01000000_16971818_16978284 NA coding upstream 53895 16971499 ~ 16978681 (+)
CI01000000_16922072_16941848 PDE6B, PDE6A coding upstream 90312 16922032 ~ 16942264 (+)
CI01000000_16919833_16920038 TMEM216 coding upstream 112501 16919833 ~ 16920075 (+)
CI01000000_16903722_16914680 NA coding upstream 117497 16903722 ~ 16915079 (+)
CI01000000_16894331_16900440 NA coding upstream 132133 16894235 ~ 16900443 (+)
CI01000000_17095875_17098978 NA coding downstream 60961 17095804 ~ 17098978 (+)
CI01000000_17226578_17228246 NA coding downstream 191735 17226578 ~ 17228309 (+)
CI01000000_17228916_17261506 NA coding downstream 193902 17228745 ~ 17261638 (+)
CI01000000_17267180_17298324 SLIT3 coding downstream 232337 17267180 ~ 17298324 (+)
CI01000000_17339270_17345013 CXCL14, CXL14 coding downstream 304427 17339154 ~ 17346200 (+)
G11039 NA non-coding upstream 17003 17015340 ~ 17015573 (+)
G11028 NA non-coding upstream 27920 17004402 ~ 17004656 (+)
G11019 NA non-coding upstream 35645 16996639 ~ 16996931 (+)
G10934 NA non-coding upstream 111015 16921292 ~ 16921561 (+)
G10937 NA non-coding upstream 129970 16901930 ~ 16902606 (+)
G11053 NA non-coding downstream 21068 17055911 ~ 17056150 (+)
G11057 NA non-coding downstream 28080 17062923 ~ 17063147 (+)
G11309 NA non-coding downstream 312442 17347285 ~ 17347552 (+)
G11314 NA non-coding downstream 381013 17415856 ~ 17416095 (+)
G11251 NA non-coding downstream 515865 17550708 ~ 17582913 (+)
G10201 NA other upstream 1102014 15930266 ~ 15930562 (+)
G9201 NA other upstream 2797635 14215024 ~ 14234941 (+)
G7522 NA other upstream 4853568 12178369 ~ 12179008 (+)
G7514 NA other upstream 4895568 12136522 ~ 12137008 (+)
G7153 NA other upstream 5786943 11244457 ~ 11245633 (+)
G11465 NA other downstream 849110 17883953 ~ 17887462 (+)
G11521 NA other downstream 997896 18032739 ~ 18164112 (+)
G11801 NA other downstream 1646024 18674116 ~ 18745376 (+)

Expression


Co-expression Network