G120588


Basic Information

Item Value
gene id G120588
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 12434607 ~ 12438838 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU178169
gtcaaaatcatttatttactataatacATAGCAGatgatgttaaaatatttagtttgtacATCATATGAGGCAGTCATATGAACATAATGttgctcttttcttttaaactacACTAAATGGGATCCTAGCAGCTGCACACTTACCCTATTGAGCCCTTTCCTCCATTTTAGTGAGTCAATTGAGATAAATCTTGTCATTTTTGTTCCCATCCATTCACATACAAGCTCCCGCATCACAACTAAACGCCTCTGAGTTGTGCTGTATTCCACACAAAAGACTGCAAGCTTTCTAAACAGCATCTGTTACAGTGGAACAAAATTCAGTACcatctaataaaaacaaaaacaaaaaaagttttatttatatagggaATTAAGTACAGTCAATGGATCTAACCCCAAATTTTCATACAtcataccacaaaaaaaaaaatctgattatagGTTTTACAAGATTATACAGAGCTCCAGTACCCcgtgatttttgttttgccaGCCATCGAAAGATGCcgacgtatttatttattttcctattgTAGGGAAACGATTAAAGCCAAAATATGATGAGTCGAACTATGGCATGACACAAACAAACGAATATATCAATTTGACCCCAGTTTAATGTTCCCTCAAACaagttagataaaaaaaaaaaaatcttgcataaaaacagttaagcattaatgtttttttttctctctttcagttaTTAAAAGTGGCAAAGAACATGCAAATTCAGTTTAAGAAATGAATCAACAGAACCGTAGAAATTTTGAAGGTCTGCGGAAACGAAACGAACAAACATGAAACGAGACGGAGATGACCAGGCGTCTTCTGAAGCCTGGATCTCTGAGATGTGCCAAACGGTTGCAGTGGGCTGTTTCCCTTTCTGTGGTTTCCAGAGTATGAGGGGCTCCCGGTTTAAAGTCTTTAGGACAAAGTGCATCCTAGGCAGGTGCCCCTAATTTTATAAACTCGTATTAGTTCAATCCCAAACGCCTTGGGACACCACCtccccaacaacaacaacaactgctgtctttaagataaaaatatcctaaaaatatatctttagtccattgtaaaataaaaaggggacaaacacaagcaaaacaaaaaataaacggCACATTTTGCCCGTACGGCAAGCCGTGCATGTGGTGTTGGTTTTAGTGAGTGACTGACAGCTCCATTgtcttttgaaaacaaaaaagttttataaatatatcttcCTTATGTTTGCCATGTTCGAAATTAGTCAATGTGCACATTTACTACGTCAAATTAACATTGACATTttctttacaatttttattcagtttctcAATCAGACTGGCTGAGGAACGGAAACGgggagcattaaaaaaaaaaaaaaaaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgacTCGTAGGCTGTTGAAATGGTGAAGTAACACGGGCAGGTTGCTACTTGTTCTCAAGGCTGTAGGAGACACACTTCCTGCCTGTCTTGTAGCTGAAGCCTGGGCTGATGCAACGGATGAACGCTGTGTCACTAAACCTGCCTCATTTTACCTCGACACACTGCGGCCCACCTGCTGTTTGTGAAGACTGAAGTTAGAATGAGAGGCTGGGGTCAGACACGTGACTACGGACAGACTCAACTCAACGTTGACGGCTTTCACCTAACGCCGGCAATAAAACGAAATGTCATATTGCCATTTTTACAATCCTTGTGGGAAATATTTGTTAATACCTATGTGACATGCCCGCTGCCGAGGCTATATTAATGGGGAGAAAcgagtgaaaaacaaaaatgtaaataataattagggCCACATGTGACCACTGacaacaaaaacagtcataaggGTGTCGTAAgaattgttggctattgctacaaatatacctttGCTTCTTAGAACTGGCTTtgtagtccagggtcacTGGCTGCTTCCACTAGCTCTGGGTGGAGAGAATACGGTATGAGAGGGTCGGGGAGGTCGGCGAAGAAGGCCTTCAGGGCCCCAGCCACGGCGTTCACGGCTACATCCATCACTATCAGGTCAACACTGTGGTCTGAGTGAAGAACGAAAATAGTGTGAGCTTGCATAAGCATCCAACTCCCTTTGTCAGTGCTGGAAAAGCCACTAAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178169 True 2146 lncRNA 0.39 3 12434607 12438838

Neighbor

gene id symbol gene type direction distance location
dtd2 dtd2,LOC107561538,LOC107697760,LOC107719450,LOC107561550,LOC107733196,LOC107674124,LOC107594854 coding downstream 34198 12399350 ~ 12400409 (-)
pomt2 LOC107674120,LOC107733198,LOC107719451,LOC107561547,LOC107594797 coding downstream 36021 12392306 ~ 12398586 (-)
vsx2 vsx2,LOC107719453,LOC107561546,LOC107697755,LOC107674062,LOC107594855 coding downstream 56805 12368695 ~ 12377802 (-)
znf839 znf839,LOC107697753,LOC107719454,LOC107561540,LOC107733156,LOC107674060,LOC107594800 coding downstream 69244 12358317 ~ 12365363 (-)
haus2 si:dkey-170l10.1,LOC107674065,LOC107733181,LOC107594802,LOC107736744 coding downstream 152501 12280052 ~ 12282106 (-)
abraxas2 LOC107719448,LOC107697762,LOC107561552,LOC107594794,LOC107674115 coding upstream 3357 12442195 ~ 12448298 (-)
LOC122361666 LOC107733171,LOC107752798,LOC107592762,LOC107697764,LOC107674069,LOC107594789 coding upstream 289395 12728233 ~ 12732379 (-)
grhl1 grhl1,LOC107752795,LOC107697767,LOC107592763,LOC107674126,LOC107733199,LOC107594788 coding upstream 388632 12827470 ~ 12845707 (-)
xkr5b LOC107592805,LOC107752812 coding upstream 471733 12910571 ~ 12919106 (-)
cgref1 LOC107697770 coding upstream 484558 12923396 ~ 12927066 (-)
G120573 NA non-coding downstream 25376 12409030 ~ 12409231 (-)
G120522 NA non-coding downstream 124246 12302666 ~ 12310361 (-)
G120510 adprhl2,LOC107719508,LOC107697751,LOC107674064,LOC107594801,LOC107733180 non-coding downstream 150271 12283284 ~ 12284336 (-)
G120514 NA non-coding downstream 162395 12271669 ~ 12272212 (-)
G120464 NA non-coding downstream 297793 12133939 ~ 12136814 (-)
LOC122361537 NA non-coding upstream 44788 12483626 ~ 12493433 (-)
G120665 NA non-coding upstream 301597 12740435 ~ 12743590 (-)
G120674 NA non-coding upstream 415050 12853888 ~ 12855927 (-)
G120675 ywhaqb,LOC107733143,LOC107674035,LOC107697768,LOC107592764,LOC107752793 non-coding upstream 435013 12873851 ~ 12881338 (-)
G120756 NA non-coding upstream 638963 13077801 ~ 13081340 (-)
lin52 lin52,LOC107594798 other downstream 43059 12381281 ~ 12391548 (-)
evla evla,LOC107719466,LOC107697733,LOC107563375,LOC107594809,LOC107733132,LOC108425620 other downstream 489879 11915468 ~ 11944728 (-)
alkal2b fam150bb,fam150b,LOC107674025,LOC107733108,LOC108425626 other downstream 629822 11800488 ~ 11804785 (-)
ush2a ush2a,LOC107674023,LOC107694925 other downstream 1113117 11144530 ~ 11321490 (-)
opn6b opn6b,LOC107719516,LOC107733149 other downstream 1580899 10847611 ~ 10853708 (-)
LOC122361973 LOC107592804,LOC107697765,LOC107752799,LOC107674033,LOC107733077 other upstream 224401 12663239 ~ 12791869 (-)
G120660 LOC107752798,LOC107592762,LOC107697764,LOC107733171 other upstream 378354 12817192 ~ 12820668 (-)
LOC122361883 LOC107592775,LOC107752809,LOC100537549,LOC108433935,LOC107733136,LOC107674087 other upstream 754339 13193177 ~ 13200692 (-)
kidins220a id2a,id2,kidins220,LOC107579075,LOC107707685,LOC107553286,LOC107655320,LOC107752760 other upstream 1542709 13981547 ~ 14040211 (-)
LOC122361652 LOC107679745,LOC107752800,LOC107594718 other upstream 2270653 14709491 ~ 14733577 (-)

Expression


Co-expression Network