G11465


Basic Information

Item Value
gene id G11465
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 17883953 ~ 17887462 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU12656
TGTTTCAATCCATATTTATTGAAACAACAGTTGACAGAACCAGCATATAACAGAAACTCAATCATGGGCAAACAGAATGGTTTTCAATCAGAAGTCTTACAGCATTATGATTTATGTTTTTCATAATATAAAAGGACATGCAAATGTATTGTCTCATTGCCAGAGTCATCCCGCTGCGAGGACAATGATTTAGCGTTAGCGGTCACTGGAAATATATAAGTTAACAAAAACATTATGTCACATAACATAACGTGTAATGTTAACATAACATTACACAGCGCGGTTAATCGAGGTCCATTTCAGGCTTGGCTTCTGTGGCGTCTGCACTGTCAGCAGCAGCTTTCTCCGTGCCGCTGGGCTGGGCTTCAGGGTTTTCCTGCGTATTGACCGGCCCGTTGGGTTCTGACGGGTTTTCTTCTTTTGGCAAGTCCACTTTGGGCTTGGGTTTGGTCACAATGGGATTGCAATTGGAGAACAGCTCCTATGTTTGGCCTGTATCTCTGACGTTTTCACCACAGGCTCCACGGCGAGACTCTGTTTACTCTGCTGGTTCATTTTACTGTTCATCCAGATCATGACATCGTTCACCATCCTGTCCACTTTCTGAACCTCTGCCTCATCTAGATGATCATACTGCTCTTCCTGCAATTCAAAAAGACACGTCAAGCCACTGACCAAGTGCAAATTTGTACCTTATGCAACATTCACCCAACACAACCTCACCTTGGTTTTGTAGGCCTCTACAATCTTCATGTATTGCTGCAACTGTCTGCCCAACTCTTCAAAAGCTTTGGGTCTCTCCTCAAATTCTGTGTACCTCTCTTGAATGGGTTGGCCGAGATTCTTCAGTTCAACAAGTTTGTCGATGTATACTTGTTTAGACTGGTCTTCACCATCCTCATACAGCCAGACCTCAGTGTCCTCTAGTTTTAATGAGAGAGCATCTCTGTCACTCTCATTGACGAACTTCTCGAATATCCCGTGCAGTTTGTCCCTCATCTCGTACACGTACTCCTCCACATTGTTCTTGGCATCGTTGCGCTCCTTCTCGAGCTTGTCCTGCATGATCATCTTTCCCTCGCTCTCCACGAAGAGGTTGAGCATGTCATTGGCTAACTGCCACTGTGGGTTGTTTTCAATGGGCAGCTCCAGGACCTTTGTTTTCACTTTGGGCTTTTTGGCTTGTGGAGGCTGATCCGATTTCTTCTCCTGTTTGCCTTCCTCTGGTGATGTCTGAACAAATCACAATCCATGGAGAGAAGTGTTATAATGACCCGTTCACACCAACAACAACTATAACGATAACTATATTAGCATCCACACCAGCGCACAATATAGTT
>TU12657
TGTTTCAATCCATATTTATTGAAACAACAGTTGACAGAACCAGCATATAACAGAAACTCAATCATGGGCAAACAGAATGGTTTTCAATCAGAAGTCTTACAGCATTATGATTTATGTTTTTCATAATATAAAAGGACATGCAAATGTATTGTCTCATTGCCAGAGTCATCCCGCTGCGAGGACAATGATTTAGCGTTAGCGGTCACTGGAAATATATAAGTTAACAAAAACATTATGTCACATAACATAACGTGTAATGTTAACATAACATTACACAGCGCGGTTAATCGAGGTCCATTTCAGGCTTGGCTTCTGTGGCGTCTGCACTGTCAGCAGCAGCTTTCTCCGTGCCGCTGGGCTGGGCTTCAGGGTTTTCCTGCGTATTGACCGGCCCGTTGGGTTCTGACGGGTTTTCTTCTTTTGGCAAGTCCACTTTGGGCTTGGGTTTGGTCACAATGGGATTGCAATTGGAGAACAGCTCCCGTGTTTTGGCCTGTATCTCTGACGTTTTCACCACAGGCTCCACGGCGAGACTCTGTTTACTCTGCTGGTTCATTTTACTGTTCATCCAGATCATGACATCGTTCACCATCCTGTCCACTTTCTGAACCTCTGCCTCATCTAGATGATCATACTGCTCTTCCTTGGTTTTGTAGGCCTCTACAATCTTCATGTATTGCTGCAACTGTCTGCCCAACTCTTCAAAAGCTTTGGGTCTCTCCTCAAATTCTGTGTACCTCTCTTGAATGGGTTGGCCGAGATTCTTCAGTTCAACAAGTTTGTCGATGTATACTTGTTTAGACTGGTCTTCACCATCCTCATACAGCCAGACCTCAGTGTCCTCTAGTTTTAATGAGAGAGCATCTCTGTCACTCTCATTGACGAACTTCTCGAATATCCCGTGCAGTTTGTCCCTCATCTCGTACACGTACTCCTCCACATTGTTCTTGGCATCGTTGCGCTCCTTCTCGAGCTTGTCCTGCATGATCATCTTTCCCTGAGGAAAAGGAATTTCACAGTAGATTTAACATTGTTGAAATCACCACCCCTAATACAGTTTCAACCGCAAAGAAAGCATACCTCGCTCTCCACGAAGAGGTTGAGCATGTCATTGGCTAACTGCCACTGTGGGTTGTTTTCAATGGGCAGCTCCAGGACCTTTGTTTTCACTTTGGGCTTTTTGGCTTGTGGAGGCTGATCCGATTTCTTCTCCTGTTTGCCTTCCTCTGGTGATGTCTGAACAAATCACAATCCATGGAGAGAAGTGTTATAATGACCCGTTCACACCAACAACAACTATAACGATAACTATATTAGCATCCACACCAGCGCACAATATAGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU12656 False 1340 TUCP 0.42 5 17883953 17887462
TU12657 True 1343 lncRNA 0.42 5 17883953 17887462

Neighbor

gene id symbol gene type direction distance location
CI01000000_17858551_17862300 FGF1A coding upstream 21633 17856808 ~ 17862320 (+)
CI01000000_17831876_17854247 NR3C1 coding upstream 29520 17830760 ~ 17854433 (+)
CI01000000_17729584_17730495 NA coding upstream 153354 17729584 ~ 17730599 (+)
CI01000000_17672091_17673742 MSX2A coding upstream 208811 17671672 ~ 17675142 (+)
CI01000000_17644414_17655141 CPEB4 coding upstream 228205 17644353 ~ 17655748 (+)
CI01000000_17897786_17904428 MARS2 coding downstream 10266 17897728 ~ 17904569 (+)
CI01000000_18144240_18154922 NA coding downstream 255647 18143109 ~ 18155084 (+)
CI01000000_18441823_18447239 NA coding downstream 552986 18440448 ~ 18447454 (+)
CI01000000_18586406_18593775 NA coding downstream 698944 18586406 ~ 18593775 (+)
CI01000000_18651815_18661568 FBXL21 coding downstream 764028 18651490 ~ 18661655 (+)
G11484 NA non-coding upstream 8345 17875312 ~ 17875608 (+)
G11443 NA non-coding upstream 87630 17796110 ~ 17796323 (+)
G11442 NA non-coding upstream 111149 17772453 ~ 17772804 (+)
G11441 NA non-coding upstream 112706 17770852 ~ 17771247 (+)
G11435 NA non-coding upstream 124349 17754590 ~ 17759604 (+)
G11473 NA non-coding downstream 25880 17913342 ~ 17919155 (+)
G11467 NA non-coding downstream 28088 17915550 ~ 17917303 (+)
G11506 NA non-coding downstream 78846 17966308 ~ 17980652 (+)
G11513 NA non-coding downstream 97320 17984782 ~ 17990620 (+)
G11518 NA non-coding downstream 166666 18054128 ~ 18059456 (+)
CI01000000_17339270_17345013 CXCL14, CXL14 other upstream 537753 17339154 ~ 17346200 (+)
G10201 NA other upstream 1953391 15930266 ~ 15930562 (+)
G9201 NA other upstream 3649012 14215024 ~ 14234941 (+)
G7522 NA other upstream 5704945 12178369 ~ 12179008 (+)
G7514 NA other upstream 5746945 12136522 ~ 12137008 (+)
G11521 NA other downstream 145277 18032739 ~ 18164112 (+)
G11801 NA other downstream 793405 18674116 ~ 18745376 (+)

Expression


Co-expression Network