LOC122361652 (LOC107679745,LOC107752800,LOC107594718)


Basic Information

Item Value
gene id LOC122361652
gene name LOC107679745,LOC107752800,LOC107594718
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 14709491 ~ 14733577 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU178876
CTCTTTGCTACGGCGGAAAAAAGTGTCTTCAGAGCCACCAACAAAAGGAAGGAGGCAGTAGTAGCATCTGAAGTACTAGAAGATGAAAATATGAAGGTGGATCTTCCTATTGAACAGATGCAAGTAAAAGAAGTTGAGGAGGAACAAAACTTCTACAATGACCTCAGACCAGGAAGTAATAGCCCTGCTAAAAACTACCATCATGCATCTTTTTCAACAAAGTCATCTACGTCCGGAACACATATgATTTCAGAATATACCTCAATTACGAAGGAGTCAAGAGACCTCCAACCCAACAGCTATGAAGAGAGCAGGGACCAGTCATTAGATCAACAACAGCCAAAAGTATGAAGCTCATGGAAAAATGCAACTAAACATATGAAATCAAATATCTCTGATTTTGCACTCTTTGTGATGCTGAAACTTTTG
>XM_043262482.1
TTTTATGACTATATTTAACTGGGGTTTTCCAGCACCTCCCCGTGGATTACCGCAGAGTTGTTTTACTTCGCGATGTCTGGACGGAGTTCTCACGCGCATCCTCCGCCGACCAAAACGGTTATTTTGTTCAGGAACGGAGACGCTTTTTATCCCGGCCGAAAATTTGTCATCAATCAACGTCAGTCATCCACTTTTGACAGCTTTCTGAACACTGTCACGCGAGGCATCACAGCTCACTTTGGGGCAGTGCGAAATATCTACACCCCCAACAAGGGTCACAGGGTGGCGAATCTGCAGCAGCTGGTGCACGGAGAAATATATGTGGCGGCCGGAGCAGAGGGACTCAAAAAGATGGAcTATCGTCACATAACAACACAAAAGcctccaaaaaagaaaagtgaaccGATCCAACCTGTAGTTCACAGCAGAATAATTGTCCCAGCTCGATGGAAGAGAATCGGTAATGAGTCGTGCATCATCAATGTTTTTACCAACGGAGATATCTTGGTTCCTCCAACACGGGTGCTGATTCCAAAACACACGCTGGCTAGCTGGGAAAACGTATTGGCCTTGGTGACTGAGAGAGTTCGCCTTCGCACCGGAGCTGTGCACAGATTGTGCCTGCTGAACGGGAGGCCTGTACGTGGATCATATGAGCTACAGAACAACCACTGTTATGTTGCTGTAGGAACAGAGAGGTTCCGGTCTTTGCCGTATCATCTGGCTCCAAGCAAGGGAGTGATCTACAATATCAcagatgtGGTCAACAACGGCATTCATCCagttccaaaaaaagaaaaacaagatagAACTTTGTTCGCAAAACCAGAAGTGGACAGCGCCGGCTCCGTTTTTTACGCCAAACAGCCAGGGCAGGGCTTGAAAATCCCAGATCTCTTTGCTACGGCGGAAAAAAGTGTCTTCAGAGCCACCAACAAAAGGAAGGAGGCAGTAGTAGCATCTGAAGTACTAGAAGATGAAAATATGAAGGTGGATCTTCCTATTGAACAGATGCAAGTAAAAGAAGTTGAGGAGGAACAAAACTTCTACAATGACCTCAGACCAGGAAGTAATAGCCCTGCTAAAAACTACCATCATGCATCTTTTTCAACAAAGTCATCTACGTCCGGAACACATATgATTTCAGAATATACCTCAATTACGAAGGAGTCAAGAGACCTCCAACCCAACAGCTATGAAGAGAGCAGGGACCAGTCATTAGATCAACAACAGCCAAAAgaCACCAAGGGGGAGGAGATGTCCTCAAAGAAGTGTGGAATACGATCTCATATGTCTAAGTTTTTAAAGGaaaagaaaaaagtaaccCTGAACTGCGGACCTAATGGCTTTTAACAGGAAGATGGATGCGTGTGTTCCCAGGGCAGATGGCCATGATGCTTTGCTATGCATATGGCTCACAGATTACCACTCCAGCAGGGTGTCAGAACTGATGAGGCAGCACTGGAGCAGAGTGTTGTGCCATTTGCATTTGAGCTTTACTGCTTAGCTGCATGGATGGCCACGCTGCTTCTCATGCTTAATGTCAGAGGCTGAATCCTGAACACAAATATGTGTCGGAGTACAACCCTCGCGACTGCTTTCAATacagtttttctgtattgtAGGAACAAGTTTTGATGCATCCCACTAATTTGACTGttaatgccttttaaattacaattataaagtttttaaacattat

Function

NR:

description
PREDICTED: doublecortin domain-containing protein 2C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178876 False 429 lncRNA 0.40 4 14719559 14724754
XM_043262482.1 True 1702 mRNA 0.45 13 14709491 14733577

Neighbor

gene id symbol gene type direction distance location
sox11a sox11a,LOC107752751,LOC107594691,LOC107679744 coding downstream 197828 14509772 ~ 14511663 (-)
LOC122361878 LOC107594701,LOC107679774 coding downstream 302815 14399105 ~ 14406676 (-)
LOC122361997 slc22a15,LOC107750851,LOC107717086,LOC107671142,LOC107553868 coding downstream 311706 14392403 ~ 14397785 (-)
rsad2 rsad2,LOC107752752,LOC107553276,LOC107707684,LOC107655310 coding downstream 499614 14206780 ~ 14209877 (-)
rnf144aa rnf144aa,rnf144a,LOC107752753,LOC107655314,LOC107553279 coding downstream 504910 14173271 ~ 14204581 (-)
colec11 colec11 coding upstream 1584 14735161 ~ 14740548 (-)
senp6b LOC107752747,LOC107679785 coding upstream 109446 14843023 ~ 14849883 (-)
mapre3a mapre3a,LOC107594695,LOC107679788,LOC107666269,LOC107752746,LOC107741846,LOC108425644 coding upstream 117717 14851294 ~ 14860450 (-)
dpysl5a dpysl5a,dpysl5,LOC107741845,LOC107666251,LOC107752745,LOC107679787,LOC107594693 coding upstream 127759 14861336 ~ 14876524 (-)
dnmt3ab LOC107679796,LOC107752744,LOC107600869 coding upstream 147877 14881454 ~ 14924493 (-)
LOC122361512 NA non-coding downstream 128623 14462125 ~ 14580868 (-)
G121069 NA non-coding downstream 252702 14451623 ~ 14456789 (-)
G121051 NA non-coding downstream 317449 14391384 ~ 14392042 (-)
G120989 NA non-coding downstream 620616 14088640 ~ 14088875 (-)
G120983 NA non-coding downstream 733265 13975747 ~ 13976226 (-)
G121096 LOC107752749,LOC107594711,LOC107666252 non-coding upstream 43309 14776886 ~ 14777109 (-)
G121123 NA non-coding upstream 57352 14790929 ~ 14792068 (-)
G121214 NA non-coding upstream 306146 15039723 ~ 15045366 (-)
LOC122361632 NA non-coding upstream 468119 15201696 ~ 15210544 (-)
G121269 NA non-coding upstream 540506 15274083 ~ 15274615 (-)
kidins220a id2a,id2,kidins220,LOC107579075,LOC107707685,LOC107553286,LOC107655320,LOC107752760 other downstream 669280 13981547 ~ 14040211 (-)
LOC122361883 LOC107592775,LOC107752809,LOC100537549,LOC108433935,LOC107733136,LOC107674087 other downstream 1508799 13193177 ~ 13200692 (-)
G120660 LOC107752798,LOC107592762,LOC107697764,LOC107733171 other downstream 1888823 12817192 ~ 12820668 (-)
LOC122361973 LOC107592804,LOC107697765,LOC107752799,LOC107674033,LOC107733077 other downstream 1917622 12663239 ~ 12791869 (-)
lin52 lin52,LOC107594798 other downstream 2317943 12381281 ~ 12391548 (-)
myo6b myo6b,LOC107741840,LOC107594692,LOC107679792,LOC107600844,LOC107666253 other upstream 58609 14792186 ~ 14839813 (-)
ptgr2 ptgr2 other upstream 277249 15010826 ~ 15026415 (-)
crip1 crip1,LOC106611282,LOC107679815,LOC107594706,LOC107600860 other upstream 326416 15059993 ~ 15064678 (-)
crip2 crip2,LOC107594708,LOC107752734,LOC107679813,LOC107666262,LOC107741856,LOC107600859 other upstream 350241 15083818 ~ 15099957 (-)
pax9 pax9,LOC107679748,LOC107666242,LOC107741874 other upstream 664211 15397788 ~ 15406503 (-)

Expression


Co-expression Network