crip1 (crip1,LOC106611282,LOC107679815,LOC107594706,LOC107600860)


Basic Information

Item Value
gene id crip1
gene name crip1,LOC106611282,LOC107679815,LOC107594706,LOC107600860
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 15059993 ~ 15064678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU179061
CGTGTGCAAACTATTTCCACAGTACTATAAATAAGGCTGCAGAGTGCATGAGCGCAAACCAAAGGCGTGGCTGTGTGCAGGTGGACCGTTGCTGCTCTCCATCTCAACTTTCTTCAAGCAGGACTTTCTCCTCCGAGGAACTAAATCACCGCAAACATGCCTAAATGCCCCAAGTGCGACAAGGAAGTTTACTTCGCTGAGAGAGTGTCGTCACTTGGCAAAGACTGGCACAGACCCTGTCTGAAGTGCGAAAAATGCAACAAGACCCTGTCGGCTGGCTCACATGCAGAGCATGATGGGAAGCCCTATTGTAACAACCCATGCTACTCGGCACTCTTTGGACCCAAAGGTTTTGGACGTGGAGGCACTGAGAGCCACACATTCAAATAGATCACTGCACAAGTTTACACGCTCTCTAAGCTTGTTTTAGAGGAGcttgatttttgtttatttgacattttgtagCCACATATTGTTAAACCAAAGACAAAAATGACCAATCCATCCAATGTTTTAGAAAGTACTAATTTGtataatctgtttttaaaatgttgtctgCTATAGAAGCACTCAATGATATTTCATTAGGGGCACTAGTCAAAGACCcttttataattaaactaaacgttttatacattaaatgtatgATTTAAACCTCCCTCTGTTTGTCCTTCACACTTATTTCtcatatatatgaattaataaaatgtactataaat
>XM_043263641.1
gcattACCGTGTGCAAACTATTTCCACAGTACTATAAATAAGGCTGCAGAGTGCATGAGCGCAAACCAAAGGCGTGGCTGTGTGCAGGTGGACCGTTGCTGCTCTCCATCTCAACTTTCTTCAAGCAGGACTTTCTCCTCCGAGGAACTAAATCACCGCAAACATGCCTAAATGCCCCAAGTGCGACAAGGAAGTTTACTTCGCTGAGAGAGTGTCGTCACTTGGCAAAGACTGGCACAGACCCTGTCTGAAGTGCGAAAAATGCAACAAGACCCTGTCGGCTGGCTCACATGCAGAGCATGATGGGAAGCCCTATTGTAACAACCCATGCTACTCGGCACTCTTTGGACCCAAAGGTTTTGGACGTGGAGGCACTGAGAGCCACACATTCAAATAGATCACTGCACAAGTTTACACGCTCTCTAAGCTTGTTTTAGAGGAGcttgatttttgtttatttgacattttgtagCCACATATTGTTAAACCAAAGACAAAAATGACCAATCCATCCAATGTTTTAGAAAGTACTAATTTGtataatctgtttttaaaatgttgtctgCTATAGAAGCACTCAATGATATTTCATTAGGGGCACTAGTCAAAGACCcttttataattaaactaaacgttttatacattaaatgtatgATTTAAACCTC

Function

symbol description
crip1 Predicted to enable peptide binding activity and zinc ion binding activity. Acts upstream of or within heart contraction and heart development. Predicted to be located in cytoplasm. Orthologous to human CRIP1 (cysteine rich protein 1).

NR:

description
cysteine-rich protein 1 (intestinal)

GO:

id name namespace
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0071493 cellular response to UV-B biological_process
GO:0071236 cellular response to antibiotic biological_process
GO:0010043 response to zinc ion biological_process
GO:0005737 cytoplasm cellular_component
GO:0003680 minor groove of adenine-thymine-rich DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0042277 peptide binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179061 True 719 lncRNA 0.41 5 15059993 15064671
XM_043263641.1 False 665 mRNA 0.42 5 15060054 15064678

Neighbor

gene id symbol gene type direction distance location
kif3cb kif3cb,LOC107594701,LOC107679774,LOC107752740,LOC107741850,LOC107600866,LOC107666256 coding downstream 65478 14989660 ~ 14994515 (-)
asxl2 asxl2,LOC107679772,LOC107666255 coding downstream 72059 14970900 ~ 14987934 (-)
dtnbb LOC107600868,LOC107741848,LOC108425647 coding downstream 90766 14927166 ~ 14969227 (-)
dnmt3ab LOC107679796,LOC107752744,LOC107600869 coding downstream 135500 14881454 ~ 14924493 (-)
dpysl5a dpysl5a,dpysl5,LOC107741845,LOC107666251,LOC107752745,LOC107679787,LOC107594693 coding downstream 183469 14861336 ~ 14876524 (-)
zfp36l1a zfp36l1a,LOC107752727,LOC107577075,LOC107679798,LOC107666263,LOC107600858,LOC107741857 coding upstream 148194 15212872 ~ 15218170 (-)
rps6ka5 rps6ka5,LOC107582903,LOC107730213,LOC107741860,LOC107679795,LOC107600856,LOC107666260 coding upstream 418433 15483111 ~ 15505931 (-)
LOC122361840 c17h14orf159,LOC107730207,LOC107679776 coding upstream 784787 15849465 ~ 15858684 (-)
slc24a4a slc24a4a,LOC107679778,LOC107730209,LOC107662654,LOC107602265,LOC107582941 coding upstream 794046 15858724 ~ 15890289 (-)
LOC122362058 crim1,LOC107679775,LOC107662656,LOC107582940 coding upstream 887904 15952582 ~ 16000711 (-)
G121214 NA non-coding downstream 14627 15039723 ~ 15045366 (-)
G121123 NA non-coding downstream 267925 14790929 ~ 14792068 (-)
G121096 LOC107752749,LOC107594711,LOC107666252 non-coding downstream 282884 14776886 ~ 14777109 (-)
LOC122361512 NA non-coding downstream 479125 14462125 ~ 14580868 (-)
G121069 NA non-coding downstream 603204 14451623 ~ 14456789 (-)
LOC122361632 NA non-coding upstream 137018 15201696 ~ 15210544 (-)
G121269 NA non-coding upstream 209405 15274083 ~ 15274615 (-)
G121301 NA non-coding upstream 247887 15312565 ~ 15313252 (-)
G121320 NA non-coding upstream 330327 15395005 ~ 15395362 (-)
G121321 NA non-coding upstream 331219 15395897 ~ 15396108 (-)
ptgr2 ptgr2 other downstream 33578 15010826 ~ 15026415 (-)
myo6b myo6b,LOC107741840,LOC107594692,LOC107679792,LOC107600844,LOC107666253 other downstream 220180 14792186 ~ 14839813 (-)
LOC122361652 LOC107679745,LOC107752800,LOC107594718 other downstream 326416 14709491 ~ 14733577 (-)
kidins220a id2a,id2,kidins220,LOC107579075,LOC107707685,LOC107553286,LOC107655320,LOC107752760 other downstream 1019782 13981547 ~ 14040211 (-)
LOC122361883 LOC107592775,LOC107752809,LOC100537549,LOC108433935,LOC107733136,LOC107674087 other downstream 1859301 13193177 ~ 13200692 (-)
crip2 crip2,LOC107594708,LOC107752734,LOC107679813,LOC107666262,LOC107741856,LOC107600859 other upstream 19140 15083818 ~ 15099957 (-)
pax9 pax9,LOC107679748,LOC107666242,LOC107741874 other upstream 333110 15397788 ~ 15406503 (-)
LOC122361708 LOC107598628,LOC107708961,LOC107654010,LOC107719547,LOC107664629,LOC107557341 other upstream 618983 15683661 ~ 15688440 (-)
G121438 LOC107708961,LOC107664629,LOC107654010,LOC107719547 other upstream 624213 15688891 ~ 15689794 (-)
G121456 LOC107660450 other upstream 673584 15738262 ~ 15740486 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G259074 NA non-coding CI01000062 null 1340045 ~ 1340355 (+)