LOC122362003 (LOC107664362,LOC107560152,LOC107752022,LOC107658150)


Basic Information

Item Value
gene id LOC122362003
gene name LOC107664362,LOC107560152,LOC107752022,LOC107658150
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 15760343 ~ 15767015 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU179457
NNNTGTTTGGGGTTGATAAGATTTTTgtagatgtttttgaaagtcgtctcttatgttcaccaaagccaacagtaatattatgaaataaaactcCATTTTAACATAACTAATGGCAAAGCTGCGTATTTTCTCTAGTTCTCAGTGTAAAGTGATCCTTAAGAAATcgtttattctttttattattattattatgctttattCCAGGTATTGTCTTTCTttaatttgaaaacagttgtgctattcagtaaatttcaaaagaaatagAAACATCTTGCAACANNNNNNNNNNNNNNNNNNNNNGAATACTTTTTGAgatctgaaaaaaatgattgcCTTTGAGATagaaaaacttaattaaaagttCTCAAGTCTTATCTTACAGTTTTTatgttacaatttttaatatatcaatTAAATTATGGTTTAAATAGATGAGGAAAGATAACCAGTGCATCTAAAATGAagaaacttaaataaaaatggacacTAAGAGAATCGATCACATTagtaagaaatataaaacacaattttttggTTCTTAAGAGAAAAAATATGAGAAGCGAGTCACTTTTAGGTCATTTAATGTTATCGCTGTCTTGGATTATTAATAAAGAGATTTATGGTTTCTCTTTTTTATGGGTCCTTTAATAACGACCCTTCAGCTGTAACTTCTGCAACAGAGGCAGAGACTGATTAGAAACCGGAGCCCCGGAGACAGCAGCGGCAGCGGAGCAGGGGACACTCCTGGCCAAGACTGCCCGGGCGTGGAGGGGGTTCCTTGGGGTCTGGAGAATGGAGGGGCCCTTGAAAGTGAAACGCAACCCCTGGAGGAGGCTAGGCAGAGGGGCCAAGGAGGGGATTTAGAACGAGTAGCAGACATAGAGGACACACAGCCTAAAgatgatgaggaagaggaggaggaagaggcagACGAAGAGCAACCCTTCAGACCTCTTACTGTGCCAGAGGGGCGCTGGGAGCAAGTCAGGTGGGTGTTATCATGGCCCTTAGGCTGCCTTCTTTACTACACTGTCCCAAACTGTGTTT
>XM_043263240.1
atgaaaAATCTGCAGCTGAGTGAGGATGTGGCCGGGGCGACTTTCATGGCTGCAGGAAGTTCAGCTCCAGAGTTATTCACTTCCTTAATTGGTGTTTTCATCACGAAGGGAGACGTGGGAGTTGGCACCATCGTTGGGTCGGCTGTCTTCAACATACTGGTCATCATTGGAGTGTGTGGCATCTTCACCCGTCAGACGGTGGCTGTGACCTGGTGGTCTCTGTTCAGAGACTCGCTGTACTACATCTTCTCAGTGCTGGCATTGATtttgGTTATCTATGATGAACGGGTTGTATGGTGGGAATCTATGCTTCTGATCTCGATGTATGGAGTCTACATCCTTATCATGAAGTTTAACAGTCAGATCGCCAGCTTCGTGCAGAGATCGTGCGGCAGTCCGGGCCAGTGTTGCGTCTGGAGGCCGACGTCCGGAGATAAAGAGGCTGATGAAGCAGGAACCAACGGCAACACCTCCATGGTGCTGCTGAGGAAAGCTCCGGCGGGTTCGGGACAGGAGTCTTCGGTGGTGATGGTGGACGAGCTGCTCATCCTGAGGCCACACCAGCTCTCGTTCCCAGAGGCTGGCCTGCGTGTCATGATCACACCGCATTTCTCTCCGCGCACCCGTCTCTCTATGGCCGGACGCATGCTCATCAGTGAGAGGCAGAGACTGATTAGAAACCGGAGCCCCGGAGACAGCAGCGGCAGCGGAGCAGGGGACACTCCTGGCCAAGACTGCCCGGGCGTGGAGGGGGTTCCTTGGGGTCTGGAGAATGGAGGGGCCCTTGAAAGTGAAACGCAACCCCTGGAGGAGGCTAGGCAGAGGGGCCAAGGAGGGGATTTAGAACGAGTAGCAGACATAGAGGACACACAGCCTAAAgatgatgaggaagaggaggaggaagaggcagACGAAGAGCAACCCTTCAGACCTCTTACTGTGCCAGAGGGGCGCTGGGAGCAAGTCAGGTGGGTGTTATCATGGCCCTTAGGCTGCCTTCTTTACTACACTGTCCCAAACTGTAGTCACCTGACTGGACTCGAGCTGCACTCCCATTCTCACAGGTCTCATTATGAACCGGCAGTGTTGTGGGTGCGTTAA

Function

NR:

description
PREDICTED: sodium/potassium/calcium exchanger 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179457 False 1047 lncRNA 0.38 3 15760532 15762485
XM_043263240.1 True 1101 mRNA 0.55 11 15760343 15767015

Neighbor

gene id symbol gene type direction distance location
rps6ka5 rps6ka5,LOC107582903,LOC107730213,LOC107741860,LOC107679795,LOC107600856,LOC107666260 coding downstream 254412 15483111 ~ 15505931 (-)
zfp36l1a zfp36l1a,LOC107752727,LOC107577075,LOC107679798,LOC107666263,LOC107600858,LOC107741857 coding downstream 542173 15212872 ~ 15218170 (-)
kif3cb kif3cb,LOC107594701,LOC107679774,LOC107752740,LOC107741850,LOC107600866,LOC107666256 coding downstream 765828 14989660 ~ 14994515 (-)
asxl2 asxl2,LOC107679772,LOC107666255 coding downstream 772409 14970900 ~ 14987934 (-)
dtnbb LOC107600868,LOC107741848,LOC108425647 coding downstream 791116 14927166 ~ 14969227 (-)
LOC122361840 c17h14orf159,LOC107730207,LOC107679776 coding upstream 82450 15849465 ~ 15858684 (-)
slc24a4a slc24a4a,LOC107679778,LOC107730209,LOC107662654,LOC107602265,LOC107582941 coding upstream 91709 15858724 ~ 15890289 (-)
LOC122362058 crim1,LOC107679775,LOC107662656,LOC107582940 coding upstream 185567 15952582 ~ 16000711 (-)
LOC122362009 crim1,LOC107679775,LOC107662656,LOC106611167 coding upstream 351107 16118122 ~ 16207614 (-)
gpr132a LOC107679764,LOC107752700,LOC107569010,LOC107732878,LOC107662643 coding upstream 671215 16438230 ~ 16440346 (-)
G121450 NA non-coding downstream 40020 15713410 ~ 15720323 (-)
G121427 NA non-coding downstream 82134 15601266 ~ 15678209 (-)
G121343 cdan1 non-coding downstream 242261 15516936 ~ 15518082 (-)
G121326 NA non-coding downstream 345190 15414869 ~ 15415153 (-)
G121324 NA non-coding downstream 347640 15412465 ~ 15412703 (-)
G121507 NA non-coding upstream 519107 16286122 ~ 16286403 (-)
G121509 NA non-coding upstream 567028 16334043 ~ 16334439 (-)
G121639 NA non-coding upstream 715632 16482647 ~ 16483969 (-)
G121644 NA non-coding upstream 782240 16549255 ~ 16550184 (-)
G121609 NA non-coding upstream 1050591 16817606 ~ 16893398 (-)
G121456 LOC107660450 other downstream 19857 15738262 ~ 15740486 (-)
G121438 LOC107708961,LOC107664629,LOC107654010,LOC107719547 other downstream 70549 15688891 ~ 15689794 (-)
LOC122361708 LOC107598628,LOC107708961,LOC107654010,LOC107719547,LOC107664629,LOC107557341 other downstream 71903 15683661 ~ 15688440 (-)
pax9 pax9,LOC107679748,LOC107666242,LOC107741874 other downstream 353840 15397788 ~ 15406503 (-)
crip2 crip2,LOC107594708,LOC107752734,LOC107679813,LOC107666262,LOC107741856,LOC107600859 other downstream 660386 15083818 ~ 15099957 (-)
LOC122362005 crim1,LOC107582940,LOC107679775,LOC107662656 other upstream 62469 15829484 ~ 15951438 (-)
acyp1 acyp1 other upstream 2195274 17962289 ~ 17963981 (-)
LOC122361562 otofb,LOC107752720,LOC107701524,LOC107723281,LOC108423539 other upstream 2215036 17982051 ~ 18004214 (-)
LOC122361613 NA other upstream 2512443 18279458 ~ 18281572 (-)
LOC122361943 NA other upstream 2864242 18631257 ~ 18644992 (-)

Expression


Co-expression Network