G121905 (tgfb3,LOC107688075,LOC107723269)


Basic Information

Item Value
gene id G121905
gene name tgfb3,LOC107688075,LOC107723269
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 17790942 ~ 17810401 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU180107
TTCAGGGGAGCCCTGGATCATGTTGAATTTGTGTATCTCTTTAGCGTAGTATTCGGTCTCGGTGTTGTCCTGGCCGCAGCTCTGATGTCTGTCTCGCCCTAACTCCTCCAGAAGCTCCCTAGTGCTGTTATAGAGGGCCAGCACTTCATAGGACACCGGACTAGGGCCCAGGGTCTGGGGCGGGCTGGTCAGCCGCAGTTTGCTGAGGATCTGACCCCGGATGGCCTCCACCCTCTTCTTCTTGATGTGGTCGATGTCCACAGTGGTGCAGGTTGATAGAGAGAAACTCATGGTCACGCTGTTcaagagaaggaaaaacagcAGTCCTCTGCCCAAATGCATGGTTTATTCTGTACGCTTGTCACTCTAGTAAACACAGTTCCAGTTCAGCTGAATGGGTTTAAAAGGATAAAGAGACTGGATTCCAGGTTGTCCTCTCTACGGGCAGGAGTTCAAGTGCTGAGCCTGTTTTCTCCATGAGATTCCATGCTGCAAACTTATTCCACATCAGCACTGCACAGTAATCCCGTAACATCCTTAAACATCCATCATTGGCGCTTTACAAGAAGCCAGACTTTCACCATAGCGTTCCCCAACCACATTTTCCCCTAAACCGAGCGCCGTGGAGGACTTTCGAGGACTTGGCTGTGAGATGCTCGCTCTCTCttgctctctctctctctctctctctctctctctctct

Function

symbol description
tgfb3 Predicted to enable cytokine activity; type II transforming growth factor beta receptor binding activity; and type III transforming growth factor beta receptor binding activity. Acts upstream of or within hematopoietic stem cell differentiation; regulation of cartilage development; and regulation of ossification. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including cardiovascular system; fin; head; immature eye; and nervous system. Human ortholog(s) of this gene implicated in Loeys-Dietz syndrome 5; arrhythmogenic right ventricular cardiomyopathy; and arrhythmogenic right ventricular dysplasia 1. Orthologous to human TGFB3 (transforming growth factor beta 3).

NR:

description
PREDICTED: transforming growth factor beta-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180107 True 703 lncRNA 0.51 2 17790942 17810401

Neighbor

gene id symbol gene type direction distance location
esrrb esrrb,LOC107678144 coding downstream 100127 17637590 ~ 17690815 (-)
dlst dlst,LOC107702243,LOC107724251,LOC107749530,LOC107678142 coding downstream 231779 17543830 ~ 17559163 (-)
LOC122362317 LOC107588350 coding downstream 262131 17522974 ~ 17528811 (-)
angel1 angel1 coding downstream 285893 17465870 ~ 17505049 (-)
cdin1 zgc:154061,LOC107665555,LOC107724250,LOC107678147,LOC107554791,LOC107568570 coding downstream 514399 17216049 ~ 17276543 (-)
ttll5 ttll5 coding upstream 22921 17833322 ~ 17911030 (-)
flvcr2a flvcr2,flvcr2a,LOC107702238,LOC107589770,LOC106591116 coding upstream 105801 17916202 ~ 17936224 (-)
jdp2a jdp2,jdp2a,LOC107701522,LOC107589793,LOC107702236 coding upstream 129340 17939741 ~ 17949238 (-)
fosaa fosaa,fos,LOC107723273,LOC107702235,LOC108423428,LOC107735358 coding upstream 141647 17952048 ~ 17958595 (-)
LOC122361452 gjd2,LOC107752716,LOC107565221,LOC107687856 coding upstream 460470 18270871 ~ 18276126 (-)
G121854 NA non-coding downstream 170271 17620220 ~ 17620671 (-)
G121799 NA non-coding downstream 188643 17353412 ~ 17602299 (-)
G121852 NA non-coding downstream 207353 17582903 ~ 17583589 (-)
G121734 NA non-coding downstream 575664 17215055 ~ 17215278 (-)
G121721 NA non-coding downstream 580682 17168223 ~ 17210260 (-)
G121965 NA non-coding upstream 194873 18005274 ~ 18005603 (-)
G121980 NA non-coding upstream 260461 18070862 ~ 18132726 (-)
G122002 fermt2,LOC107565223,LOC107589764 non-coding upstream 325938 18136339 ~ 18148376 (-)
G121987 NA non-coding upstream 356356 18166757 ~ 18171026 (-)
G121986 NA non-coding upstream 363316 18173717 ~ 18212416 (-)
LOC122362005 crim1,LOC107582940,LOC107679775,LOC107662656 other downstream 1839504 15829484 ~ 15951438 (-)
LOC122362003 LOC107664362,LOC107560152,LOC107752022,LOC107658150 other downstream 2023927 15760343 ~ 15767015 (-)
G121456 LOC107660450 other downstream 2050456 15738262 ~ 15740486 (-)
G121438 LOC107708961,LOC107664629,LOC107654010,LOC107719547 other downstream 2101148 15688891 ~ 15689794 (-)
LOC122361708 LOC107598628,LOC107708961,LOC107654010,LOC107719547,LOC107664629,LOC107557341 other downstream 2102502 15683661 ~ 15688440 (-)
acyp1 acyp1 other upstream 151888 17962289 ~ 17963981 (-)
LOC122361562 otofb,LOC107752720,LOC107701524,LOC107723281,LOC108423539 other upstream 171650 17982051 ~ 18004214 (-)
LOC122361613 NA other upstream 469057 18279458 ~ 18281572 (-)
LOC122361943 NA other upstream 820856 18631257 ~ 18644992 (-)
G122247 NA other upstream 976481 18786882 ~ 18790880 (-)

Expression


Co-expression Network