LOC122361562 (otofb,LOC107752720,LOC107701524,LOC107723281,LOC108423539)


Basic Information

Item Value
gene id LOC122361562
gene name otofb,LOC107752720,LOC107701524,LOC107723281,LOC108423539
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 17982051 ~ 18004214 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU180186
ATGTACTAAACACCACAGAGAAGTGACTTGAGTTTTTCCTGATGGTCTTTTGAACAAATGGGTGGCTTTGTCTCAGGCAACAGAACTGCATCCGGCAGACATCAATGGGAAGGCCGACCCATACATCTCCATCAAGCTCGGGAAGACAGAGATCAAGGACAAAGAGAACTACATCTCGAAACAACTCAACCCTGTGTTCGGAAAGTCAGTACATTAACACTTGCATTTAAC
>XM_043262357.1
ATGAAGCGTAACAAGCATCGAGCCTCCAAGGACGATGGCAAAGGTCAAGATGAGCCGGCCATTCTGGAGACGGAGGATATGAGGATGCCAGATCCTGACACCATCTCGCTCGCTTCAGTTACTGCCGTCACAACCAATGTCTCCAATAAAAGATCAAAACCTGACATTAAGATTGAGCCTAGTGCTGGAAGACCAGTGGATTTCCAAATCAGTGTCACTGTTATAGAGGCCAGACAGCTGGTGGGCCTGAACATGGATCCAGTGGTGTGTGTAGAAATAggtgatgaaaaaaaatacacctcGATGAAGGAGTCAACCAACTGCCCTTACTACAATGAGTACTTCGTTTTTGACTTCCACGTTCCTCCTGATGTCATGTTTGACAAGATCCTGAAAGTGTCTGTTATCCACTCTAAGAATCTTTTGCGGAGTGGCACACTGGTCGGGAGCTTCAAGCTTGATGTGGGCACAGTTTATACACAACCTGAACATCAGTTCTTCCACAAATGGGCCACCTTATGTGACCCCGATGATATCACAGCCGGATGCAAAGGCTATGTGAAGTGTGACATCGCAGTTGTGGCTAAAGGAGACACTATCAAAACCCCACACAAAGCAAATGAATCGGATGAGGATGACATTGAGggTAATCTTCTGTTGCCGGAAGACGTCCCGGCTGAGCGTCAGTGGGCAAGATTCTATCTGAAAATCTATCGAGCCGAGGGCTTGCCCAAAATGAACACCAGCATAATGGCAAATGTCAAAAAAGCTTTCATTGGAGAAAATAAGGACTTGGTTGATCCGTACGTCCAGGTGCAATTTGCAGGGCAGAAGGGTAAAACCTCAATCCAGAAGAGCAGCTATGAGCCAATCTGGAATGAGCAGATCGTTTTTACCGAGCAGTTTCCACCACTGTGCCGGAGAATGAAAGTCCAGATCCGTGATTCAGACAAAGTGAACGATGTGGCCATCGGAACGCACTTCATTGACCTGAGGAAGATTGCTAATGATGGAGACAAAGGCTTTCTTCCAACTCTTGGTCCGGCTTGGGTCAACATGTACGGCTCCACACGCAGCTACACGCTGATGGACGAGTACCAGGACCTGAATGAAGGGCTAGGAGAAGGGGTGTCGTTCAGGGCCCGGCTGCTGATCAGTATGTCCGTGGAGATACTGGACACCTCTTCTCCTGAAGTATTGAGCTCCACTGAGGTGCAGGTGGAGGGGATACCCAACATCTCAGATAATGCCACGGGAAAAATTGAAGAGTTCTTTCTCTTTGGATGTTTTCTTGAAGCCACTATGATTGACAGGAAGATTGGAGACAAACCCATCAACTTTGAGGTTACAATAGGAAACTATGGCAGTGAAGTCGATACTCCAACCAAACCAAAAACGAAGAAAAAGAAGGGTGGCGATGGTGACGACGAGGAGTCTGAGCTCATTCATGGCTCTAGTGACGAGGAGGTGGATGATAGTGGAGATATGACATCAGTTTCCACCACTCCTCCAATGAAGCCAGTCATCACTGACAGAAACTATTTCCACCTCCCGTACTTTGAGAGGAAGCCCTGCATCTATATCAAGAGCTGGTGGCAGGACCAAAGAAGACGGCTTTATAACGCTAACATCATGGACAGTATTGCAGATAAACTGGAAGAGGGGTTGAACGATGTGCAGGAgatcattaaaacagaaaaagcctACCCCGAGCGCAGACTCAGAGGAGTCCTGGAGGAACTCAGCAATGGCTGCAGTACCTTTGTAACTTTGGCAAGCAATGATCAGAATCAGGCTGGGAAGACTAAACTGGACCGGGAGAGGCTGAAATTGTGCATGCAAGAATTGgaaaaCATGGGCCAGCAAGCAAAGAATATGCGATCCCAAGTAAAGAAAAGCAATgtgaaagacaaaataaaactggCACAAAACTTCCTCCACAAGCTGAGATTCTTTTCTGATGAGCCTCAGCATAGTGTCCCAGATATTTACATATGGATGATAAGCAACAACAAACGGATTGCATATGCCCGCGTTCCCTCCAAAGACATCCTCTTCTCTTCTGTGGACGAAGAAACTGGAAAGGACTGTGGGAAAGTCCAGACCATCTTTTTCAAGCTCCCTGGAAAGAAAAGCTTTGGACCTGCAGGTTGGACCGTTCAGGCTAAAACTGAGCTGTATCTGTGGCTCGGCTTGAACAAGCAGCGTAAGGACTACTTGAGTGGCCTACCGAATGGGTTTGAAGAGAACAAGGCAATAAAAGGACCCGGGATACTGTCCACACCCCCCATCAGCCTGATGTACACCATGAAGCAGATCTTCCAGCTGAGGGTTCACATGTATCAGGCTCGTAGCCTGTTTGCAGCCGACAGCACAGGCCTGTCAGACCCTTTTGCCAGGGTATTTTTTTCCACCCACAGCCAGGTCACAGAGGTCCTGAATGAGACGTTGTGTCCTACGTGGGATCAGCTGATGGTGTTTGATAATGTGGAGCTCTATGGTGAGGCTGGTGAACTGAGAGATGATCCTCCTATAATCGTCATCGAGATCTATGATCAGGACACTGTTGGAAAAGCTGATTTCATGGGTAGGACATTCGCTAAACCTATAACCAAGATGTCAGACGAGCATTATGGGCCACCACGCTTCCCTCCTCAACTAGAGTACTACCAGATCTACCGGGGAAACTGCACCGCAGGAGAAATGCTGGCGGCCTTTGAACTGCTGCAGATCGGACCAGGTGGAAAGGCCGACCTACCCCCAATAGATGGACCTTCTGATATCGATCGTGGTCCAATCCTGCCTGTTCCTATTGGCATAAGACCTGTCTTGAGTAAATACCGAATTGAGGTTCTGTTCTGGGGCCTGAGGGACCTGAAGCGAGTGAACCTGGCCCAGGTTGACCGTCCTCGCGTGGACATCGAGTGTGCAGGGAAAGGTGTTCAGTCAGCGCTGATTCAGAACTACAAGAAAAACCCCAACTTCAGCACTCTGGTCAAGTGGTTTGAAGTGGACCTGCCTGAAAACGAGCTCCTCCACCCTCCTCTGAACATCCGTGTGGTGGACTGCCGGGCGTTTGGTCGTTACACGCTAGTCGGATCCCATGCCGTCACATCTCTACGCAAATTCATTTACAGGCCATCAGACAAGAGCGTCAATAATTGGTCTGCCATGGAGGAGGTTGTGATCCACACAGAGCCAGAACCGCCTGTGAAGAAGATTGAGACAGTGGTCAAACTCGACTCGGCGTCCGACGCTGTGGTTAAAGTCGACATGCCAGATGATGAGAAAGGTGGGAAGGGGAAAAAGAAGCGTAAGAAGGGGGAAGAGGTGGAAGAGGAGGAGCTGGATGAAAGCATGCTGGACTGGTGGTCCAAATACTTTGCATCGATTGAAACAATGAAGGAGATCATTAAAGCGCAAGAGGCAGAAGCTGAGGAGAAGGAAGATTTTGAGTCTGGAGATGGTAAgaagaagagaggaaaagGAAACAAGAACAAAGCCATGCCTGGCGAGGGAGTACCagagaagaagaagcagaaaaTCGAAGAGCTGAAGatgtACAACAGAGAGCTTGAATATGAGTTTGACACCTTTGAAGATTGGCTTCACACTTTCAACCTTTATCGAGGAAAGTGTTCAGATGATGCTGATGTTGAGCAGAACGCAGCTGATGAAGACAGACTCATTGGCAAATTCAAGGGATCCATGTGCATCTACAAAGTCCCGGTATCCGACGACGTGTCCAGAGAAATGGGCTTTGATTCAAACATGGGCATGTTCCAGAACATCCCGCACAACGACCCCATTAACGTCCTCGTGCGAGTCTATGTGGTCCGGGCAACAGAACTGCATCCGGCAGACATCAATGGGAAGGCCGACCCATACATCTCCATCAAGCTCGGGAAGACAGAGATCAAGGACAAAGAGAACTACATCTCGAAACAACTCAACCCTGTGTTCGGAAAGTCTTTTGATATCGAGGCGACGCTCCCGATGGATTCCACCCTCACCGTGTCCATCTACGACTGGGATTTGGTGGGAACCGATGACCTGATTGGGGAGACAAAGATCGACTTGGAGAACCGTTTCTTCAGCAAACACAGGGCAACATGTGGTCTCAGCGCCAACTACGCAATTCACGGCTATAACGTGTGGAGGGACCCAATGAAGCCAACGCAAATCCTTGCCAAACTCTGCAAAGATGGAAAAATGGATCCGCCCCAGTACGGCCCGGGGGGAAAAGTGAAAGTGGCGAACAGAGTTTACACAGGACTGACTGAAATCGAGGATGAAAATGGCTTGAAGAAACAGACAGATGAGCACCTGGCTCTTGCTGTGCTAAACCGCTGGGAAGACATGCCACGGATCGGCTGCAAACTGGTCTCGGAGCACGTGGAGACGAGGCCTCTCCTGAACCCAGATAAACCTGGGATGGAGCAGGGAAGGATTGAGCTGTGGGTGGACATGTTCCCGAAGGATATGGCTGCGCCGGGACCCGCTCTCGATATTTCACCAAGGAAACCAAAGAAGTTTGAGCTCAGGGTGATCGTGTGGAACACAGACGAAGTCGTTCTGGAAGATGATGACATTTTCACAGGGGAAAAATCCAGTGACATATTTGTGAGAGGATGGCTGAAAGGCCAACAAGAAGATAAGCAGGACACAGATGTCCACTATCACTCGCTGACCGGAGAGGGCAATTTCAACTGGCGCTTCGTCTACCCTTTCGACTACCTGCAGGCCGAGGAGAAAATCGTCATCTCAAAGAAAGAGTCCATGTTTTCTTGGGACGAGACCGAGTATAAAATTCCTGCCCGACTGAATCTGCAAGTGTGGGATGCGGATCACTTCTCCGCAGACGACTTCTTGGGTGCAATTGAACTAGACCTGAACCGATTTCCTCGTGGTGCAAAGACAGCGAAGCAGTGCTCCATTGACATGGTGCTCAATGAGCAAGACATGCCCATGGTCAACATCTTCAAACAGAAGAGAATTAAAGGCTGGTGGCCATTTGTGGCCCGAGATGAAAATGATGAGATGGAAATTACAGGAAAAGTGGAAGCAGAGCTTCACCTGCTGACAGGTGAGGAGGCCGAGAAGAGTCCTGTTGGTGAAGGACGCAATGAACCAGAGCCCTTGGAGAAACCAAACCGTCCTGACACAACCTTCCTGTGGTTCATCAGTCCGCTCAAAGCAATCCGCTATCTAATCTGCAACAACTACAAGTGGCTAATCATCAAAATTGTGGTGGTTCTGATGATATTAGCGATGCTGGCCTTGTTTCTGTACAGTATGCCAGGTTACATGGTGAAAAAGCTCCTAGGGGCTTGAAAAGCTTTCTCAACATCGCTAACCCAAGCGGGTGTTTCTGGAATGATCTATTTGTTTGTTGGAGAAGTCATTTGCATACTTACTGTTTTTCATCTGTGTTAAAGATAATTACTGCTTTAATTAAACGATCATAAACATACTAATAAATAGCAAAGCCCAGCTGAGAACAGTCACTGGCGATCATCAAACGCAGAAAGGAGACTTCAGCAGGTCTTTTGGAAAACgctagtttttacattttaagcattgaaaaccttttatcCAATCGTAGCCGTTAGTTCTTTGTGTTTcagataatataaaaaaaaatctaaaaacatgtAGTGGTCTAATTTGTCTGCATATCCAGTGctgatgtaaaatgttttttatatcaattcATACGCTTTTTGGCTTTGCCTTAAATTACGTTTTTCTTCACTAAAAGATGTGTTATTGTGTGCTTTGGATGCAACTAAtaaatcactaaaaaaaaaaatgcatgcattttatttcttaacaGTTCATGAAAATCCTACACTTTCTGCACAAATCAAAACTCTAAAAACCAGGCTAATTGCGGATTACTGCCCTTCAACACTTCACAATAAACAGGCCCATCTAacgttcattttaaaagaaatctaaCTCACAACGGCAGCGTTCAATCTCAAAGTCACGAGTAGCACTGATTTACGTGCCAAAATTGCATGTGGTCAATAAGAcgcattttaaatgtgtatgtgcccgatttttaaaagcttgtttaaTGGTTTTGTCCCACCAGCCGCCCCGACATTACATTCCTGTGGTTCCTTAGCCCGCTAAAGGCAATCCGCCATCTCATCTGCAACCAGTACAAGTGGCTGGTCATCAAAATTGTGTTGGCGCTGCTGCTTCT

Function

symbol description
otofb Predicted to enable AP-2 adaptor complex binding activity and calcium ion binding activity. Acts upstream of or within neuromuscular process controlling balance and response to auditory stimulus. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in presynaptic active zone membrane and synaptic vesicle membrane. Is expressed in inner ear; lateral line system; and otic sensory epithelium. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 9. Orthologous to human OTOF (otoferlin).

NR:

description
otoferlin isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180186 False 231 lncRNA 0.45 1 17988778 17989008
XM_043262357.1 True 6214 mRNA 0.47 41 17982051 18004214

Neighbor

gene id symbol gene type direction distance location
fosaa fosaa,fos,LOC107723273,LOC107702235,LOC108423428,LOC107735358 coding downstream 23456 17952048 ~ 17958595 (-)
jdp2a jdp2,jdp2a,LOC107701522,LOC107589793,LOC107702236 coding downstream 32813 17939741 ~ 17949238 (-)
flvcr2a flvcr2,flvcr2a,LOC107702238,LOC107589770,LOC106591116 coding downstream 45827 17916202 ~ 17936224 (-)
ttll5 ttll5 coding downstream 71021 17833322 ~ 17911030 (-)
LOC122361798 ift43,LOC107723274 coding downstream 173894 17792213 ~ 17808157 (-)
LOC122361452 gjd2,LOC107752716,LOC107565221,LOC107687856 coding upstream 266657 18270871 ~ 18276126 (-)
aqr aqr coding upstream 277862 18282076 ~ 18311121 (-)
paplna papln,paplna coding upstream 309467 18313681 ~ 18341936 (-)
psen1 psen1,LOC107684238,LOC107753355,LOC107687832,LOC107723284 coding upstream 343211 18347425 ~ 18355107 (-)
trappc12 trappc12,LOC107684236,LOC107687835,LOC107753354,LOC107723257,LOC107589762 coding upstream 369776 18373990 ~ 18389654 (-)
G121905 tgfb3,LOC107688075,LOC107723269 non-coding downstream 171650 17790942 ~ 17810401 (-)
G121854 NA non-coding downstream 361380 17620220 ~ 17620671 (-)
G121799 NA non-coding downstream 379752 17353412 ~ 17602299 (-)
G121852 NA non-coding downstream 398462 17582903 ~ 17583589 (-)
G121734 NA non-coding downstream 766773 17215055 ~ 17215278 (-)
G121965 NA non-coding upstream 1060 18005274 ~ 18005603 (-)
G121980 NA non-coding upstream 66648 18070862 ~ 18132726 (-)
G122002 fermt2,LOC107565223,LOC107589764 non-coding upstream 132125 18136339 ~ 18148376 (-)
G121987 NA non-coding upstream 162543 18166757 ~ 18171026 (-)
G121986 NA non-coding upstream 169503 18173717 ~ 18212416 (-)
acyp1 acyp1 other downstream 18070 17962289 ~ 17963981 (-)
LOC122362005 crim1,LOC107582940,LOC107679775,LOC107662656 other downstream 2030613 15829484 ~ 15951438 (-)
LOC122362003 LOC107664362,LOC107560152,LOC107752022,LOC107658150 other downstream 2215036 15760343 ~ 15767015 (-)
G121456 LOC107660450 other downstream 2241565 15738262 ~ 15740486 (-)
G121438 LOC107708961,LOC107664629,LOC107654010,LOC107719547 other downstream 2292257 15688891 ~ 15689794 (-)
LOC122361613 NA other upstream 275244 18279458 ~ 18281572 (-)
LOC122361943 NA other upstream 627043 18631257 ~ 18644992 (-)
G122247 NA other upstream 782668 18786882 ~ 18790880 (-)
LOC122362226 vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939,LOC107758712 other upstream 815449 18819663 ~ 18836620 (-)
ralgapa2 ralgapa2,LOC107687934 other upstream 1143117 19147331 ~ 19282456 (-)

Expression


Co-expression Network