G121980


Basic Information

Item Value
gene id G121980
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 18070862 ~ 18132726 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU180210
GTGTTCccatattttattgaaaaataaatacatcgaGTCTTTTTTCCGAGCAAGCTTCTCTCCGATGGCCTCCAGCAGCAAGTAGTCTTGTAATAAACAAGAACACGGAGAGGACTCGTCCAAAGACAATCACTGTTATAGgcagttttaatgattttaacagAGCTACAGTAAATGAGATCCAGCGTAACACAAGGTTAGAGGAAAACATCAGCGTCGATGAACTTTAACAAGGACCCTGTGATACACACAagacaagaaagaaaagaaacactaaTTACTAATGggttcaaaaaaaataaataaatacagcagtCCGCTCGTCTAAATTAGTCTAATGAGACAACCAGTTAAGTTCTTACTTCTGCTCTTTAAGTGCAGAAGGTGAACAGATTATTTCAATAAACGGGATCTAGAGTAAGACACAAATCTTCTGTCAACATTGTCCACAAAAACAGACTGAAGGAGCGGGAAAGTCAAACTACAGGAGAGTCTTGAGCCCGTCGCATctgaacacacagacacacacactctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagacactctctcacacacacacacacacactctctcacacacagagacacacacacacacacacacacacacacacagagagacacacacacacacacacacacacacactctctcacacacacagacacacacacacacacagacacacagacacacacacacacactctctctctcacacacacacacacacacacacattctctcacacacacagagacactctctctcacacacacacacacacacactcacacacactctcacacacacacacacacacacacactctcactcacacacacacattctctcacacacacagagacactctctctcacacacacacacactctctctcacacacacacacacacacacactctcacacacacacacacacacacacacacacacacacacacagcttctaTGTTTAACAGTGCTGTTATTCATGGCACATATAAATGCTAAAACTAGTGAAGGGGGAACCCCGTGAAAGCCTGTCAAGaacaataaacagaaaaagatgcttaaagaaaaataattgtgaGATTATTCTCATGAAAACTAAGCTCTTCGGTCCATATtcttacaaaataattaattatgtttaaaaaaaaaaaaaaacacttcctgaGGGGTGAAATGCGACTCTGGGCAGGTTTCATAAGTTTCTCCCAATCAACAGCCCCTGCTCTCAAACCAGAAACAGACTGAACTATCTGCCCCTCCGTTCATAATCATGtgcacagaaagaaagaaataaggtCAGACCACATCACCATGCAGTCGTGAGAACATGACGAAGAAACCTCGAGTGCCGTTCtgcataaaaatagaattttcttAACCATAGACATTTAGTTGTGCTTCTTATTGCATTAAATAGACATTGTTCCCTCGAGTCAAAAGTTAAGTAAGTGCCAGCCATTATTAGGGGTTTATTGTGCAAGAAAGCTTGTTTCCACCGCAGGAGAAAAACAAAGGGGCGTTCTGCGACTTTACTGCGACTCTGACCCAACATCTCACAAccttgaagaaaaagaaaatcagactTGTGATATGTAAATTAGTTCGAAATCTGGCATAAAAAGGTGCAGTTGCCTTATTTATTAATCCGCggcagaaacaggcttccacGGTTACGACTGATTAAAGACGTCGGTCTGACCCCTAGAAATGGACGCGTGGTCTGAGACTGTGCGTATGCCTCCTGTGGGTCAGGTGCACTCTTTGgacttgttttataaaaaaataatagctatTCTCAATGACGAGGTTGGGAAGTGCAGTCTTTGCATAGTCCAGCCTCCGTCCAATCGGGAAGGAGACGTCCTAGAGGCCCGAAGCGGACGGGAAGGGCTCGGTCTGTGCTACATGGGGCTGGTGTTTTCCGCCTGGCTTGTGCTCTGCTGCTTGTATATGAAGGTCAGGAGGAAGAGGGCCACGTCATGGGACGTCCAGTAGGCCGTGTGTGAGGTCACGGCCGACCAATAGCGGCTCTCCACCAAACCCTCCCGAAGCTCGAAGTCAATGCGGTGCTCCA
>TU180215
GTGTTCccatattttattgaaaaataaatacatcgaGTCTTTTTTCCGAGCAAGCTTCTCTCCGATGGCCTCCAGCAGCAAGTAGTCTTGTAATAAACAAGAACACGGAGAGGACTCGTCCAAAGACAATCACTGTTATAGgcagttttaatgattttaacagAGCTACAGTAAATGAGATCCAGCGTAACACAAGGTTAGAGGAAAACATCAGCGTCGATGAACTTTAACAAGGACCCTGTGATACACACAagacaagaaagaaaagaaacactaaTTACTAATGggttcaaaaaaaataaataaatacagcagtCCGCTCGTCTAAATTAGTCTAATGAGACAACCAGTTAAGTTCTTACTTCTGCTCTTTAAGTGCAGAAGGTGAACAGATTATTTCAATAAACGGGATCTAGAGTAAGACACAAATCTTCTGTCAACATTGTCCACAAAAACAGACTGAAGGAGCGGGAAAGTCAAACTACAGGAGAGTCTTGAGCCCGTCGCATctgaacacacagacacacacacactctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacagacaca
>TU180216
GTGTTCccatattttattgaaaaataaatacatcgaGTCTTTTTTCCGAGCAAGCTTCTCTCCGATGGCCTCCAGCAGCAAGTAGTCTTGTAATAAACAAGAACACGGAGAGGACTCGTCCAAAGACAATCACTGTTATAGgcagttttaatgattttaacagAGCTACAGTAAATGAGATCCAGCGTAACACAAGGTTAGAGGAAAACATCAGCGTCGATGAACTTTAACAAGGACCCTGTGATACACACAagacaagaaagaaaagaaacactaaTTACTAATGggttcaaaaaaaataaataaatacagcagtCCGCTCGTCTAAATTAGTCTAATGAGACAACCAGTTAAGTTCTTACTTCTGCTCTTTAAGTGCAGAAGGTGAACAGATTATTTCAATAAACGGGATCTAGAGTAAGACACAAATCTTCTGTCAACATTGTCCACAAAAACAGACTGAAGGAGCGGGAAAGTCAAACTACAGGAGAGTCTTGAGCCCGTCGCATctgaacacacagacacacacacactctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacacaaaaacacaa
>TU180217
acacacacacacacacacacagacacacagacacacacacactctctctcacacacacacacacacacacacacacattctctcacacacacagagacactctctctcacacacacacacactctctctcacacacacacacacacacactcacacacacacacacacacacacacacacacacacacacacacagcttctaTGTTTAACAGTGCTGTTATTCATGGCACATATAAATGCTAAAACTAGTGAAGGGGGAACCCCGTGAAAGCCTGTCAAGaacaataaacagaaaaagatgcttaaagaaaaataattgtgaGATTATTCTCATGAAAACTAAGCTCTTCGGTCCATATtcttacaaaataattaattatgtttaaaaaaaaaaaaaaacacttcctgaGGGGTGAAATGCGACTCTGGGCAGGTTTCATAAGTTTCTCCCAATCAACAGCCCCTGCTCTCAAACCAGAAACAGACTGAACTATCTGCCCCTCCGTTCATAATCATGtgcacagaaagaaagaaataaggtCAGACCACATCACCATGCAGTCGTGAGAACATGACGAAGAAACCTCGAGTGCCGTTCtgcataaaaatagaattttcttAACCATAGACATTTAGTTGTGCTTCTTATTGCATTAAATAGACATTGTTCCCTCGAGTCAAAAGTTAAGTAAGTGCCAGCCATTATTAGGGGTTTATTGTGCAAGAAAGCTTGTTTCCACCGCAGGAGAAAAACAAAGGGGCGTTCTGCGACTTTACTGCGACTCTGACCCAACATCTCACAAccttgaagaaaaagaaaatcagactTGTGATATGTAAATTAGTTCGAAATCTGGCATAAAAAGGTGCAGTTGCCTTATTTATTAATCCGCggcagaaacaggcttccacGGTTACGACTGATTAAAGACGTCGGTCTGACCCCTAGAAATGGACGCGTGGTCTGAGACTGTGCGTATGCCTCCTGTGGGTCAGGTGCACTCTTTGgacttgttttataaaaaaataatagctatTCTCAATGACGAGGTTGGGAAGTGCAGTCTTTGCATAGTCCAGCCTCCGTCCAATCGGGAAGGAGACGTCCTAGAGGCCCGAAGCGGACGGGAAGGGCTCGGTCTGTGCTACATGGGGCTGGTGTTTTCCGCCTGGCTTGTGCTCTGCTGCTTGTATATGAAGGTCAGGAGGAAGAGGGCCACGTCATGGGACGTCCAGTAGGCCGTGTGTGAGGTCACGGCCGACCAATAGCGGCTCTCCACCAAACCCTCCCGAAGCTCGAAGTCAATGCGGTGCTCCA
>TU180219
acacacacacacacacacacagacacacagacacacacacactctctctcacacacacacacacacacacacacacacacattctctcacacacacagagacactctctctcacacacacacacacacacactcacacacactctcacacacacacacacacacacactctctcacacacacagagacactctctctcacacacacacacactctctctcacacacacacacacacacacactctcacacacacacacacacacacacacacacacacacacacagcttctaTGTTTAACAGTGCTGTTATTCATGGCACATATAAATGCTAAAACTAGTGAAGGGGGAACCCCGTGAAAGCCTGTCAAGaacaataaacagaaaaagatgcttaaagaaaaataattgtgaGATTATTCTCATGAAAACTAAGCTCTTCGGTCCATATtcttacaaaataattaattatgtttaaaaaaaaaaaaaaacacttcctgaGGGGTGAAATGCGACTCTGGGCAGGTTTCATAAGTTTCTCCCAATCAACAGCCCCTGCTCTCAAACCAGAAACAGACTGAACTATCTGCCCCTCCGTTCATAATCATGtgcacagaaagaaagaaataaggtCAGACCACATCACCATGCAGTCGTGAGAACATGACGAAGAAACCTCGAGTGCCGTTCtgcataaaaatagaattttcttAACCATAGACATTTAGTTGTGCTTCTTATTGCATTAAATAGACATTGTTCCCTCGAGTCAAAAGTTAAGTAAGTGCCAGCCATTATTAGGGGTTTATTGTGCAAGAAAGCTTGTTTCCACCGCAGGAGAAAAACAAAGGGGCGTTCTGCGACTTTACTGCGACTCTGACCCAACATCTCACAAccttgaagaaaaagaaaatcagactTGTGATATGTAAATTAGTTCGAAATCTGGCATAAAAAGGTGCAGTTGCCTTATTTATTAATCCGCggcagaaacaggcttccacGGTTACGACTGATTAAAGACGTCGGTCTGACCCCTAGAAATGGACGCGTGGTCTGAGACTGTGCGTATGCCTCCTGTGGGTCAGGTGCACTCTTTGgacttgttttataaaaaaataatagctatTCTCAATGACGAGGTTGGGAAGTGCAGTCTTTGCATAGTCCAGCCTCCGTCCAATCGGGAAGGAGACGTCCTAGAGGCCCGAAGCGGACGGGAAGGGCTCGGTCTGTGCTACATGGGGCTGGTGTTTTCCGCCTGGCTTGTGCTCTGCTGCTTGTATATGAAGGTCAGGAGGAAGAGGGCCACGTCATGGGACGTCCAGTAGGCCGTGTGTGAGGTCACGGCCGACCAATAGCGGCTCTCCACCAAACCCTCCCGAAGCTCGAAGTCAATGCGGTGCTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180210 True 2179 lncRNA 0.44 2 18130074 18132726
TU180215 False 660 lncRNA 0.41 2 18131919 18132726
TU180216 False 617 lncRNA 0.40 2 18070862 18132726
TU180217 False 1318 lncRNA 0.45 3 18130074 18131825
TU180219 False 1408 lncRNA 0.46 3 18130074 18131825

Neighbor

gene id symbol gene type direction distance location
fosaa fosaa,fos,LOC107723273,LOC107702235,LOC108423428,LOC107735358 coding downstream 112267 17952048 ~ 17958595 (-)
jdp2a jdp2,jdp2a,LOC107701522,LOC107589793,LOC107702236 coding downstream 121624 17939741 ~ 17949238 (-)
flvcr2a flvcr2,flvcr2a,LOC107702238,LOC107589770,LOC106591116 coding downstream 134638 17916202 ~ 17936224 (-)
ttll5 ttll5 coding downstream 159832 17833322 ~ 17911030 (-)
LOC122361798 ift43,LOC107723274 coding downstream 262705 17792213 ~ 17808157 (-)
LOC122361452 gjd2,LOC107752716,LOC107565221,LOC107687856 coding upstream 138145 18270871 ~ 18276126 (-)
aqr aqr coding upstream 149350 18282076 ~ 18311121 (-)
paplna papln,paplna coding upstream 180955 18313681 ~ 18341936 (-)
psen1 psen1,LOC107684238,LOC107753355,LOC107687832,LOC107723284 coding upstream 214699 18347425 ~ 18355107 (-)
trappc12 trappc12,LOC107684236,LOC107687835,LOC107753354,LOC107723257,LOC107589762 coding upstream 241264 18373990 ~ 18389654 (-)
G121965 NA non-coding downstream 65259 18005274 ~ 18005603 (-)
G121905 tgfb3,LOC107688075,LOC107723269 non-coding downstream 260461 17790942 ~ 17810401 (-)
G121854 NA non-coding downstream 450191 17620220 ~ 17620671 (-)
G121799 NA non-coding downstream 468563 17353412 ~ 17602299 (-)
G121852 NA non-coding downstream 487273 17582903 ~ 17583589 (-)
G122002 fermt2,LOC107565223,LOC107589764 non-coding upstream 3613 18136339 ~ 18148376 (-)
G121987 NA non-coding upstream 34031 18166757 ~ 18171026 (-)
G121986 NA non-coding upstream 40991 18173717 ~ 18212416 (-)
G122013 NA non-coding upstream 69328 18202054 ~ 18208382 (-)
G122015 NA non-coding upstream 72780 18205506 ~ 18208351 (-)
LOC122361562 otofb,LOC107752720,LOC107701524,LOC107723281,LOC108423539 other downstream 66648 17982051 ~ 18004214 (-)
acyp1 acyp1 other downstream 106881 17962289 ~ 17963981 (-)
LOC122362005 crim1,LOC107582940,LOC107679775,LOC107662656 other downstream 2119424 15829484 ~ 15951438 (-)
LOC122362003 LOC107664362,LOC107560152,LOC107752022,LOC107658150 other downstream 2303847 15760343 ~ 15767015 (-)
G121456 LOC107660450 other downstream 2330376 15738262 ~ 15740486 (-)
LOC122361613 NA other upstream 146732 18279458 ~ 18281572 (-)
LOC122361943 NA other upstream 498531 18631257 ~ 18644992 (-)
G122247 NA other upstream 654156 18786882 ~ 18790880 (-)
LOC122362226 vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939,LOC107758712 other upstream 686937 18819663 ~ 18836620 (-)
ralgapa2 ralgapa2,LOC107687934 other upstream 1014605 19147331 ~ 19282456 (-)

Expression


Co-expression Network