LOC122361613


Basic Information

Item Value
gene id LOC122361613
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 18279458 ~ 18281572 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU180335
CACATATCTGAGTGTAGATCACATGAATGTGTCGCTTGTGTAACTCGTGAAAGACGTCTTTCTCCAGCCGTTCCTGAACGCTGCCAGAGCTGTGAGCGACCGCTGGAAACACGGCTTCATCGGGGTCTCTGGCGTCTGTCGGCAGCAACTCCACGAAACATTAACAGATCTTTCGAGAAGAATTCTTACGCAACTCAACGCTCTCTGCCACGCAGGATGTCGTGCGGCTCGTGTATCTGGGGCATCGTCTGGCTGCTGGTGCTGCTGCTTCTCGGCTGGCCCTTGAGCATCATGCTGGGGGGTCTGTACGGCCTCGTCGCCCCCCTCACCGTCTGCCTGGGTCTGGACCGGCTCGCTGACCTGCTGATGGAGGGAGCCAATCTGGGCAGGAAGTGTGCCCTGAACATGCGGCACGGCAAAGCACTGTGCTGAGAGCGACAGCTCGGCCTCACTTCAGCTGTATTAATAATCTACGTGAACTGTGCCTTTGATTCTCTGTGACTAGAACGTGATGCTTAAAGCCttacagatgcttttttttgcttcctttGTTTCTCCTGGGCTGTTTGAATATAGAAAATGATTATGTTCTGCCACCGATGTCTGAGTTTACGGTGTTGAAATACAGTACACTTGCATTACAAGAAGAGTTTGTTAACCTCTCTTCTTTAGAGAGGACGCAAGATGCAGTTCTTCAAAACCAGGTCCTTTCCAGGTCAAGAATGAGCTGAAGTGTGAGTTTGTATCAACGCATTATTGTGGATTATTCTCTGAACGGTGTCTCACGCATTAATGAATAAACTGATTTTCGGCTCCAtgcactgcagctttaactAAAACTTGactaaatgtttgtttcttgaaataaaaaaattaacttttgccT
>XR_006252985.1
TCTGAGTGTAGATCACATGAATGTGTCGCTTGTGTAACTCGTGAAAGACGTCTTTCTCCAGCCGTTCCTGAACGCTGCCAGAGCTGTGAGCGACCGCTGGAAACACGGCTTCATCGGGGTCTCTGGCGTCTGTCGGCAGCAACTCCACGAAACATTAACAGATCTTTCGAGAAGAATTCTTACGCAACTCAACGCTCTCTGCCACGCAGGATGTCGTGCGGCTCGTGTATCTGGGGCATCGTCTGGCTGCTGGTGCTGCTGCTTCTCGGCTGGCCCTTGAGCATCATGCTGGGGGGTCTGTACGGCCTCGTCGCCCCCCTCACCGTCTGCCTGGGTCTGGACCGGCTCGCTGACCTGCTGATGGAGGGAGCCAATCTGGGCAGGAAGTGTGCCCTGAACATGCGGCACGGCAAAGCACTGTGCTGAGAGCGACAGCTCGGCCTCACTTCAGCTGTATTAATAATCTACGTGAACTGTGCCTTTGATTCTCTGTGACTAGAACGTGATGCTTAAAGCCttacagatgcttttttttgcttcctttGTTTCTCCTGGGCTGTTTGAATATAGAAAATGATTATGTTCTGCCACCGATGTCTGAGTTTACGGTGTTGAAATACAGTACACTTGCATTACAAGAAGAGTTTGTTAACCTCTCTTCTTTAGAGAGGACGCAAGATGCAGTTCTTCAAAACCAGGTCCTTTCCAGGTCAAGAATGAGCTGAAGTGTGAGTTTGTATCAACGCATTATTGTGGATTATTCTCTGAACGGTGTCTCACGCATTAATGAATAAACTGATTTTCGGCTCCAtgcactgcagctttaactAAAACTTGactaaatgtttgtttcttgaaataaaaaaattaacttttgccTCCATAAA

Function

GO:

id name namespace
GO:0000041 transition metal ion transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006826 iron ion transport biological_process

KEGG:

id description
ko04142 Lysosome
ko04216 Ferroptosis
ko04978 Mineral absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU180335 False 886 TUCP 0.48 2 18279465 18281572
XR_006252985.1 True 887 lncRNA 0.48 2 18279458 18281566

Neighbor

gene id symbol gene type direction distance location
LOC122361452 gjd2,LOC107752716,LOC107565221,LOC107687856 coding downstream 3332 18270871 ~ 18276126 (-)
fosaa fosaa,fos,LOC107723273,LOC107702235,LOC108423428,LOC107735358 coding downstream 320863 17952048 ~ 17958595 (-)
jdp2a jdp2,jdp2a,LOC107701522,LOC107589793,LOC107702236 coding downstream 330220 17939741 ~ 17949238 (-)
flvcr2a flvcr2,flvcr2a,LOC107702238,LOC107589770,LOC106591116 coding downstream 343234 17916202 ~ 17936224 (-)
ttll5 ttll5 coding downstream 368428 17833322 ~ 17911030 (-)
aqr aqr coding upstream 504 18282076 ~ 18311121 (-)
paplna papln,paplna coding upstream 32109 18313681 ~ 18341936 (-)
psen1 psen1,LOC107684238,LOC107753355,LOC107687832,LOC107723284 coding upstream 65853 18347425 ~ 18355107 (-)
trappc12 trappc12,LOC107684236,LOC107687835,LOC107753354,LOC107723257,LOC107589762 coding upstream 92418 18373990 ~ 18389654 (-)
ccr6b LOC107558470,LOC107753366,LOC107687955,LOC107758715,LOC107687848,LOC107589789 coding upstream 317653 18599225 ~ 18602734 (-)
G122019 NA non-coding downstream 56044 18223122 ~ 18223414 (-)
G121986 NA non-coding downstream 67042 18173717 ~ 18212416 (-)
G122013 NA non-coding downstream 71076 18202054 ~ 18208382 (-)
G122015 NA non-coding downstream 71107 18205506 ~ 18208351 (-)
G121987 NA non-coding downstream 108432 18166757 ~ 18171026 (-)
G122079 NA non-coding upstream 77170 18358742 ~ 18359108 (-)
G122081 NA non-coding upstream 87812 18369384 ~ 18369874 (-)
G122104 NA non-coding upstream 140042 18421614 ~ 18425369 (-)
G122114 NA non-coding upstream 144741 18426313 ~ 18426728 (-)
G122115 NA non-coding upstream 146383 18427955 ~ 18428405 (-)
LOC122361562 otofb,LOC107752720,LOC107701524,LOC107723281,LOC108423539 other downstream 275244 17982051 ~ 18004214 (-)
acyp1 acyp1 other downstream 315477 17962289 ~ 17963981 (-)
LOC122362005 crim1,LOC107582940,LOC107679775,LOC107662656 other downstream 2328020 15829484 ~ 15951438 (-)
LOC122362003 LOC107664362,LOC107560152,LOC107752022,LOC107658150 other downstream 2512443 15760343 ~ 15767015 (-)
G121456 LOC107660450 other downstream 2538972 15738262 ~ 15740486 (-)
LOC122361943 NA other upstream 349685 18631257 ~ 18644992 (-)
G122247 NA other upstream 505310 18786882 ~ 18790880 (-)
LOC122362226 vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939,LOC107758712 other upstream 538091 18819663 ~ 18836620 (-)
ralgapa2 ralgapa2,LOC107687934 other upstream 865759 19147331 ~ 19282456 (-)
LOC122362030 cldn20,tfb1m,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299,LOC108269830,LOC107680107,LOC107728964,LOC107675319 other upstream 1542887 19824459 ~ 20053139 (-)

Expression


Co-expression Network