LOC122362381


Basic Information

Item Value
gene id LOC122362381
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 18541215 ~ 18542247 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU180447
ATTTAGCCTAAGAGTTGCCATATAAACTATAAAGAGGAAAAGGAGACAAAATTCATAAACCGAATCACCGAACATTTATTTGCCGTTTAGGCTACGTCAGATTTTAAGATTTATGTACCCCGCCTAGAGGGCATGTCGTCACGTTTCACTTCAATTCCAGAAATGTAGCCATACATGAGACATTGCCCATTCAAAGGGTTTGTAGGGCTCTGGATAATTTCTATTATAACTCTGATTGgaaaaagtcacatacacctaggatgcttcaaaggcTGAAATTTGAATCCATACGCAAGAGGGCTGcaatcaatccatccatccatccatcatctatccatccatccatccatccatccatccatccatccatcatctatccatccatccatccatcatccatccatccatccatccatccatccatccatccatccatcatctatccatccatccatccatccatccatccatccatccatcc
>XR_006253099.1
AACTTTCAAGTACACACTAGTGTTCCAAAGCTCTTTCTAAAGTTCAAACTAACAGTTTTAACACACGTTCTTGTGTGTGGTATTTAGCCTAAGAGTTGCCATATAAACTATAAAGAGGAAAAGGAGACAAAATTCATAAACCGAATCACCGAACATTTATTTGCCGTTTAGGCTACGTTCTGGCAAATTTTAAGATTTATGTACCCCGCCTAGAGGGCATGTCGTCACGTTTCACTTCAATTCCAGAAATGTAGCCATACATGAGACATTGCCCATTCAAAGGGTTTGTAGGGCTCTGGATAATTTCTATTATAACTCTGATTGgaaaaagtcacatacacctaggatgcttcaaaggcTGAAATTTGAATCCATACGCAAGAGGGCTGcaatcaatccatccatccatccatcatctatccatccatccatccatccatccatccatc

Function

GO: NA

KEGG:

id description
ko04216 Ferroptosis
ko04978 Mineral absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU180447 True 481 lncRNA 0.42 3 18541215 18542166
XR_006253099.1 False 449 lncRNA 0.39 3 18541333 18542247

Neighbor

gene id symbol gene type direction distance location
trappc12 trappc12,LOC107684236,LOC107687835,LOC107753354,LOC107723257,LOC107589762 coding downstream 151561 18373990 ~ 18389654 (-)
psen1 psen1,LOC107684238,LOC107753355,LOC107687832,LOC107723284 coding downstream 186108 18347425 ~ 18355107 (-)
paplna papln,paplna coding downstream 199279 18313681 ~ 18341936 (-)
aqr aqr coding downstream 230094 18282076 ~ 18311121 (-)
LOC122361452 gjd2,LOC107752716,LOC107565221,LOC107687856 coding downstream 265089 18270871 ~ 18276126 (-)
ccr6b LOC107558470,LOC107753366,LOC107687955,LOC107758715,LOC107687848,LOC107589789 coding upstream 56978 18599225 ~ 18602734 (-)
atp6v1c2 LOC107687954,LOC107753364,LOC107558472,LOC107687850,LOC107589777,LOC107758708 coding upstream 62894 18605141 ~ 18616059 (-)
exd2 LOC107687943,LOC107753346,LOC107758720,LOC107687840 coding upstream 131879 18674126 ~ 18684463 (-)
numb numb,LOC107687942,LOC107753345 coding upstream 143780 18686027 ~ 18726828 (-)
LOC122362202 galnt16,LOC107707671,LOC107687852 coding upstream 252342 18794589 ~ 18815103 (-)
G122140 NA non-coding downstream 7239 18528886 ~ 18533976 (-)
G122126 NA non-coding downstream 95454 18445486 ~ 18445761 (-)
G122122 NA non-coding downstream 107686 18433178 ~ 18433529 (-)
G122121 NA non-coding downstream 108381 18432598 ~ 18432834 (-)
G122120 NA non-coding downstream 109471 18431446 ~ 18431744 (-)
LOC122361944 NA non-coding upstream 94803 18637050 ~ 18644573 (-)
LOC122361655 odc1,LOC107687839,LOC107687948,LOC107753348,LOC107758719,LOC107558486,LOC107687945,LOC107753347,LOC107758716,LOC107687860 non-coding upstream 108232 18650479 ~ 18667122 (-)
G122241 NA non-coding upstream 125125 18667372 ~ 18668011 (-)
G122240 LOC107753347,LOC107687945,LOC107558486,LOC107687860,LOC107758716 non-coding upstream 127681 18669928 ~ 18673941 (-)
G122245 NA non-coding upstream 154255 18696502 ~ 18698827 (-)
LOC122361613 NA other downstream 259643 18279458 ~ 18281572 (-)
LOC122361562 otofb,LOC107752720,LOC107701524,LOC107723281,LOC108423539 other downstream 537001 17982051 ~ 18004214 (-)
acyp1 acyp1 other downstream 577234 17962289 ~ 17963981 (-)
LOC122362005 crim1,LOC107582940,LOC107679775,LOC107662656 other downstream 2589777 15829484 ~ 15951438 (-)
LOC122362003 LOC107664362,LOC107560152,LOC107752022,LOC107658150 other downstream 2774200 15760343 ~ 15767015 (-)
LOC122361943 NA other upstream 89010 18631257 ~ 18644992 (-)
G122247 NA other upstream 244635 18786882 ~ 18790880 (-)
LOC122362226 vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939,LOC107758712 other upstream 277416 18819663 ~ 18836620 (-)
ralgapa2 ralgapa2,LOC107687934 other upstream 605084 19147331 ~ 19282456 (-)
LOC122362030 cldn20,tfb1m,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299,LOC108269830,LOC107680107,LOC107728964,LOC107675319 other upstream 1282212 19824459 ~ 20053139 (-)

Expression


Co-expression Network