G122270


Basic Information

Item Value
gene id G122270
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 19020997 ~ 19022185 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU180637
acttTAACATGCTTGGGTAGAAGGAAACGTTTATTTTTGTCTCAATCAAGTTTGACTTTCGCCCTTtatattcaaaagtttaggCACCTCTGTTATAGACTGTCAACATGCTtgccatatttattaaatataaatatgatattaaataaaatactgggTAATTCTCACAACTCATTGTGCAACAATTCAGAAGTGTCACATTTCTGATGACTGGATTTTTCTTTATCTTATTTTGGCTGAACAATCAATACTAAATCAATGTCAACTGAAAcatttttctgcattaaaatatttttgagctCAAACGTTTGGGTGATTTCTTTCAGTCCCtgtattcagcaaagatgcattaaactgatcaaaagtaatGACGTTTATCATTTCCAAAAATACGAAATCTAATTCTATTGAACTTTCTATTCTGAAAGTTCGACtgttcataataacaataataataaatgttttttaagcatattagaataacctaaccAACTCTGAACTCGAACATACAGAGAAGTTTAACTGaatagtgaatttttttttaaatgcattcaaaaacagGAAGCTCATCCAAACGGTAAAGAAGCGTGGAGGAAGTGTGATGGTTTGAAGCTACTTTGGTTTTCATGAAACAGGACGTCTTACCATCACAGTCCTGAAACATCACAAATGCTCCCAAAGACTGCATTTGATTTCATCGAGTCCACCAACGTcgcagtttttaataaaatgttgttgtttttgattgcTGTTATTGCAGCTCAAGATGGTCACACCAGACATTCACTCTTGATCTTAAAGTTTTCAAACGAGCCGTGGGTTTActagtttcatttaaaaagccaCAGTGATTATACAAACAGTGGTCAATATGCCAAAAAACTACATTCCCAGAAAGAGTTTTCTGGCAATGGAGATGGCGGGGCGATTCACCTCAAAAGGCTGGTCCAGGGTGAAGGGCACAGAGCAGGTACACACACTAGTGCTGTTCCAGCTGTAGTTCTGAGAGCAGTTGAAACACGGACTGGACATGTCGACACCCGT

Function

GO:

id name namespace
GO:0007034 vacuolar transport biological_process

KEGG:

id description
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU180637 True 1044 lncRNA 0.36 2 19020997 19022185

Neighbor

gene id symbol gene type direction distance location
LOC122361743 NA coding downstream 28117 18981501 ~ 18992880 (-)
LOC122362028 NA coding downstream 39630 18978706 ~ 18981367 (-)
LOC122361746 vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939 coding downstream 82360 18921965 ~ 18938637 (-)
LOC122361744 galnt16,LOC107707671,LOC107687852 coding downstream 103507 18887551 ~ 18917490 (-)
LOC122362022 NA coding downstream 156555 18860972 ~ 18864442 (-)
nkx2.4a nkx2.4a,nkx2-4,LOC107707661,LOC107688185,LOC107558479,LOC107737279 coding upstream 404528 19426713 ~ 19429509 (-)
nkx2.2a nkx2.2a,nkx2-2,LOC107558480,LOC107707659,LOC107737280,LOC108435751 coding upstream 442823 19465008 ~ 19469172 (-)
foxa2 foxa2,LOC107656870,LOC107558496 coding upstream 571754 19593939 ~ 19596388 (-)
prkd3 prkd3,LOC107657158,LOC108435798,LOC108270251,LOC107736975,LOC107656871 coding upstream 586593 19608778 ~ 19654074 (-)
mocs3 mocs3,LOC107657152,LOC107737282,LOC107679656,LOC107736978 coding upstream 632260 19654445 ~ 19661295 (-)
LOC122361748 NA non-coding downstream 902 19015597 ~ 19020095 (-)
G122246 NA non-coding downstream 320742 18698844 ~ 18700255 (-)
G122245 NA non-coding downstream 322170 18696502 ~ 18698827 (-)
G122240 LOC107753347,LOC107687945,LOC107558486,LOC107687860,LOC107758716 non-coding downstream 347056 18669928 ~ 18673941 (-)
G122241 NA non-coding downstream 352986 18667372 ~ 18668011 (-)
G122274 NA non-coding upstream 4595 19026780 ~ 19066968 (-)
G122334 NA non-coding upstream 116341 19138526 ~ 19138826 (-)
G122343 insm1,insm1b,LOC107558475,LOC107564444,LOC107756196 non-coding upstream 145196 19167381 ~ 19169489 (-)
G122344 NA non-coding upstream 148362 19170547 ~ 19170753 (-)
G122350 NA non-coding upstream 350579 19372764 ~ 19374501 (-)
LOC122362226 vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939,LOC107758712 other downstream 184377 18819663 ~ 18836620 (-)
G122247 NA other downstream 230117 18786882 ~ 18790880 (-)
LOC122361943 NA other downstream 376005 18631257 ~ 18644992 (-)
LOC122361613 NA other downstream 739425 18279458 ~ 18281572 (-)
LOC122361562 otofb,LOC107752720,LOC107701524,LOC107723281,LOC108423539 other downstream 1016783 17982051 ~ 18004214 (-)
ralgapa2 ralgapa2,LOC107687934 other upstream 125146 19147331 ~ 19282456 (-)
LOC122362030 cldn20,tfb1m,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299,LOC108269830,LOC107680107,LOC107728964,LOC107675319 other upstream 802274 19824459 ~ 20053139 (-)
LOC122362234 kif26a,kif26ab,LOC107739214,LOC107662598,LOC107732702,LOC107559913,LOC107586892 other upstream 1534538 20556723 ~ 20636159 (-)
aspg aspg,LOC107586863,LOC107739215,LOC107732472,LOC107662599 other upstream 1735531 20757716 ~ 20770229 (-)
nenf nenf,LOC107739254,LOC107664444,LOC107732830,LOC107662615,LOC107586886 other upstream 1893016 20915201 ~ 20916639 (-)

Expression


Co-expression Network