XLOC_006727


Basic Information

Item Value
gene id XLOC_006727
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31950157 ~ 31955798 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013846
TGCAGTAAGCCATTGACTTCTTCATCTTTCATGTTCCACCCAAGAGAAAAACTCACCTGCATTGTGGATGAcctgaaggAGTTTGTGCCAGAATGCTGCCCGGAGCTGTTCAGCTTTTTTAGCAGGCCTGCTTTCCCAGGGAAAATTGATGAAGGCAACGAAAATAATGTGAAATGAAAAACTGAGGAGTAAAAGAGCCACAGCTCAAGGATCTCAACACAAACTCTTCCTACTGCGCTGCTACACGGCCTACTGTTCTACCACCTCAGAGACGCGGCAAGAGAGAACGAGGGCAGGGGAGGAGAGGAGGAAAGAGACCCTGACAAGCACATGCTTCTCCACCCAGGAGAACAACGCTGGAAGAAAGAAAAGCCTATAAGAGATTGGATGACAGAGTTCCAgcagagaaaataaatgaagaatttaGGTAGAGTGTTGACTTTTTACTCAACAAGAGAGAAAGATTGTTGGTTAGAAATATAGAGGAGATGGACGAAAAAAGAGAGAGACCAGAAGCAGAGTTTATATTGATGTAGTCAACTGATacattgtgtgcatgtatgtgcgtgtgtgcacAAGAAATGAAGTATGTGTTTTCTGTGCTACTAGCGACACCAAATGGAGctgtgttttaaaactaatactCGCATCTCTGCCATTGGTCTGTCATACGGATGACCCCGCCTTAAATTTGAGTCATTGTTGCTGTGCTAATCTGGTCAGAACTCTTAAacagaaaagtgtttttttttttttaaaggacattgttaaaatgaaaatgctCTCACCTTTAAGATGTTTTaacctttatgtgtttctttattctattgaaAACAGAAGAAGAGATTTTGAAGGAAGATAAaatcctgtaactattgacttccataggaaaaacaaatactacagacatcaatagttacaggttttgagatttctccaaaatatcttcttttgagttggaaaaacaggtttggaacaagtgagggaagagtaaatgatgacagaatcatttaaatcatttttagttGTACTATTTCTTGTTCAAACGCTGAATTGTTGATTTATAGGCACTTTTCCTTGtggatcagtggttctcaaccttttGGTATCGAAGGCTCCAACTGTCCAAGATAACATAAAAAGATTAAAATTGTACTCAACAAAAGACTCAACGTATATTTTTactagaaaaaaaatgaaaaagaaagaaaatattttcaatatttgatttaaaattatttgaagTTATCTTAACTAAAAAGATAATGAAATATAAGATGAATCTTTTTTACTCTTAATGTCAAtgcatgtttccaacattcttcaaaatatcttaatttgtgtttaacagactaaaataagtgaagttttgcaaactaatttcaagaggagaccgtgatatgattgatcatggTTAGTccctcatccgtaatcagtagtAATACAACCAGATTgatccaagcctacaataaatagagCGATTTCACCCTACTGCCTTGATGGAATTGGAT
>TCONS_00013847
TGACGTTTAACGTACCGTTAATCCAGTCAGACTCACGCAGGTGCAGAGCAGAGAGAGTGAGTGGGTGATTGGGACGTCACGTCACTTCCCGCGCACGGCAGTTTAGAAAAATACGGACAAacaactgtaaatgaacagataCCATATTTACTGATGAGGAAAAcgcataaaaagTGCAGTAAGCCATTGACTTCTTCATCTTTCATGTTCCACCCAAGAGAAAAACTCACCTGCATTGTGGATGAcctgaaggAGTTTGTGCCAGAATGCTGCCCGGAGCTGTTCAGCTTTTTTAGCAGgtttctcctgtattttacaattcCATCCCGCTATCATCTTGTAAAGGCCTGCTTTCCCAGGGAAAATTGATGAAGGCAACGAAAATAATGTGAAATGAAAAACTGAGGAGTAAAAGAGCCACAGCTCAAGGATCTCAACACAAACTCTTCCTACTGCGCTGCTACACGGCCTACTGTTCTACCACCTCAGAGACGCGGCAAGAGAGAACGAGGGCAGGGGAGGAGAGGAGGAAAGAGACCCTGACAAGCACATGCTTCTCCACCCAGGAGAACAACGCTGGAAGAAAGAAAAGCCTATAAGAGATTGGATGACAGAGTTCCAgcagagaaaataaatgaagaatttaGGTAGAGTGTTGACTTTTTACTCAACAAGAGAGAAAGATTGTTGGTTAGAAATATAGAGGAGATGGACGAAAAAAGAGAGAGACCAGAAGCAGAGTTTATATTGATGTAGTCAACTGATacattgtgtgcatgtatgtgcgtgtgtgcacAAGAAATGAAGTATGTGTTTTCTGTGCTACTAGCGACACCAAATGGAGctgtgttttaaaactaatactCGCATCTCTGCCATTGGTCTGTCATACGGATGACCCCGCCTTAAATTTGAGTCATTGTTGCTGTGCTAATCTGGTCAGAACTCTTAAacagaaaagtgtttttttttttttaaaggacattgttaaaatgaaaatgctCTCACCTTTAAGATGTTTTaacctttatgtgtttctttattctattgaaAACAGAAGAAGAGATTTTGAAGGAAGATAAaatcctgtaactattgacttccataggaaaaacaaatactacagacatcaatagttacaggttttgagatttctccaaaatatcttcttttgagttggaaaaacaggtttggaacaagtgagggaagagtaaatgatgacagaatcatttaaatcatttttagttGTACTATTTCTTGTTCAAACGCTGAATTGTTGATTTATAGGCACTTTTCCTTGtggatcagtggttctcaaccttttGGTATCGAAGGCTCCAACTGTCCAAGATAACATAAAAAGATTAAAATTGTACTCAACAAAAGACTCAACGTATATTTTTactagaaaaaaaatgaaaaagaaagaaaatattttcaatatttgatttaaaattatttgaagTTATCTTAACTAAAAAGATAATGAAATATAAGATGAATCTTTTTTACTCTTAATGTCAAtgcatgtttccaacattcttcaaaatatcttaatttgtgtttaacagactaaaataagtgaagttttgcaaactaatttcaagaggagaccgtgatatgattgatcatggTTAGTccctcatccgtaatcagtagtAATACAACCAGATTgatccaagcctacaataaatagagCGATTTCACCCTACTGCCTTGATGGAATTGGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013846 False 1511 lncRNA 0.36 3 31950157 31953845
TCONS_00013847 True 1731 lncRNA 0.37 5 31950157 31955798

Neighbor

gene id symbol gene type direction distance location
XLOC_006726 utp25 coding downstream 11517 31925254 ~ 31938640 (-)
XLOC_006725 syt14a coding downstream 61670 31844011 ~ 31888487 (-)
XLOC_006724 sertad4 coding downstream 120371 31805824 ~ 31829786 (-)
XLOC_006723 NA coding downstream 149751 31800032 ~ 31800406 (-)
XLOC_006722 BX537123.1 coding downstream 255110 31694931 ~ 31695047 (-)
XLOC_006728 NA coding upstream 27263 31983061 ~ 31999012 (-)
XLOC_006729 BX470107.1 coding upstream 67690 32023488 ~ 32063016 (-)
XLOC_006730 NA coding upstream 114100 32069898 ~ 32455993 (-)
XLOC_006731 NA coding upstream 502133 32457931 ~ 32567256 (-)
XLOC_006732 NA coding upstream 536269 32492067 ~ 32494872 (-)
XLOC_006471 BX537274.2 misc downstream 21685252 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 31123932 825904 ~ 826225 (-)
XLOC_006718 BX537123.2 non-coding downstream 370593 31579448 ~ 31579564 (-)
XLOC_006710 CR931802.1 non-coding downstream 744964 31193485 ~ 31205193 (-)
XLOC_006708 CR931802.2 non-coding downstream 823111 31126449 ~ 31127046 (-)

Expression


Co-expression Network