LOC122361452 (gjd2,LOC107752716,LOC107565221,LOC107687856)


Basic Information

Item Value
gene id LOC122361452
gene name gjd2,LOC107752716,LOC107565221,LOC107687856
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 18270871 ~ 18276126 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262205.1
CCAGAGCTGCTTCACGTGAACAGGGCGGAGCTGAAGGTCCTGGCTCTCCTCAAGGACGTTTGCGCTCCGACAGCTGTGTCGTCTTTCCATTACACGCAGCAACAAGTATGAACCTCAagcccccaaaaaaaaaaaaaaggtggaggTCACCTCCGCTCTCCTCGCCATGACACGAGTTCAGCATCCCCGGAAAGAATCCGGCTTCATTCCCAGCGCAtgaacatcatcatcatcatcatcatcatcatcatcatcaccttcaCCTTCATCATCACACATATGAAAGCCGCGCGTTTTGGCAGCTCGCGATAAAGCCCCACATGACGCAGCAGGGCTCTCCACGGCACTGAAGCCATATTAAAGCCCGCCGCCCTCCACCCACACCATCAATCTGATGTGGAGATCGAAGATAGGAGGGCTCACATGACTCCACTCCAGACTGGAAGACGAGGAGAAGCGTGGCATCTTCCAGCATCAGCACTGCCACAGCTGGCGCAGCTCGTAACGGCGGACAGCGGGAGGAAATATCCACGCTTTTCCCTGGATTTGGAGCAGAGTCTGCGGATGAGCAGCGATGGGGGAATGGACCATACTAGAGAGGCTCTTGGAGGCTGCTGTTCAGCAGCACTCCACTATGATCGGAAGGATCCTGCTCACCGTGGTGGTGATCTTCCGGATCCTAATCGTAGCTATAGTGGGAGAGACGGTGTATGACGACGAGCAGACCATGTTTGTCTGTAACGCCTTGCAGCCGGGCTGCAACCAGGCGTGCTACGACAAAGCGTTCCCCATATCTCACATCAGATATTGGGTCTTCCAGATCATAATGGTCTGCACGCCGAGTCTCTGCTTCATCACGTACTCGGTCCACCAGTCGGCCAAGCAGAAGGAGCGACGCTACTCCACCGCCACCGTCCTCCTCACGCTGGATAACAAGGAGCAGGATTCCCTGAAGCGAGAGGAGGCCAAGAACCAAAAGATCAAGAACACCATCATGAACGGAGTACTGCAGAACACGGAGAACTCCACCAAAGAAGCCGAGCCCGACTGCCTGGAGGCCAAAGAAATGGCCAGCTCGGGCACGAAACCGGCCAAGTCCAAAATGCGGCGGCAGGAGGGCATTTCCCGGTTTTACATCATCCAGGTGGTGTTCAGAAACGCTCTGGAAATCGGCTTCCTGGTGGGCCAGTATTTCTTGTACGGATTCAACGTGCCCGCCGTGTACGAGTGCGATCGATACCCGTGCATCAAGGAGGTGGAGTGTTACGTCTCCAGGCCCACGGAGAAAACCGTGTTCCTCGTCTTCATGTTCGCGGTCAGCGGCTTCTGCGTGGTCCTCAATCTGGCCGAGCTCAATCACTTGGGCTGGAGGAAGATCAAAACGGCCGTGAGGGGCGTGAGGGCCCGCAGGAAGTCCATCTACGAGATCCGGAACAAGGATTTGCCCCGGATGAGTATGCCCAATTTCGGCCGCACTCAGTCCAGTGACTCCGCCTACGTGTAACGGGCGCGTAACGAGAACCCGAAGCCCGCGCGCCGCCGAGATCGAGACCGTGGACGAGTGCCGTCGCCACGTAAGGTTCATGAATTGCAAGAACACGGGGTAGGACTTTTTTGTTACTGTTTTAAAGACTCCACTGGCAACCGCGGACGACAGACGCGTTTGTAAAGCGGTTCACTACTGAATAATTAATGCGACTTTTTAGCAACGTTTGTACTCTGAGACGTACACAAAGAGCAGATGCTGATACCTGAATGCGTATTGCCTCTCTAAAAAGCTGCGGTGACACTTGACATGACACTGTCCGTGCCGCGCGCGCACAATGCATGCTTTATGATTCATCGCGCTAAACTCCAAGCGGCTCCACGACGACTGCTGTGACATGAGCACTGACATGTGAAGTGTGACCGAACCAGCTGCTCTACTGTACTTGAAGGGAGTAAAGGCGTCTTGCACTAAAAAGTGAACGTGATGCTGACATAATATCGCACATCGGGAGAGTCTCGAGCCACAATATTTCATGTAGCTATCAAACACTATCGCTTCCGCTGcggtttctttctttttggttgCCTGTACCGCACCATTGACCTTAACGTAGGCTATGTGATGAGCTCCAAATCTGCTGTCGcgtccttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgcgtgcgtgtgtgcgtgcgcaggGGTGAATTTGCTGCAAACGCTTAAAGTCTGTGACGATTTCCTTAATTTCGACACCAAAGCGCCCTCTGCTTTCATTTGTGACGTGTTTTAATCGCGCTTAAGTGTAATCAAGTGCCAtacctgtatataaatatatgcatatatacatatagaatCTATTCTGAAGAATATAACCATATCCATAAAGCAGATTTATTGCTTGAATTATGCTCACCGCGTCCAGACCTGCTTTAGCTCTATTTGCtgtaaatgaactgaaaatggCACAACGCGTTGTCGCTTCTCTTtcgtttgggaaaaaaaaaaaaaaaaaaacggccaGGTGGGGAATAAAGCGCTGGTCTTTTCCACGCAGGACAGCCGTCTTTGCTCGCTAACACACGACGGAACAGCGTTTCAGCAATGTTTTGTGCTCtggggctgtttttttttctttttctttccaccCGTGTAGTTTGTTTTGGGATTCACGTACTGTTAAGTGAAAAGCCCACGCCTGCCGCATCTCTTCCGCTCTCGAGCGGGCGCGCGCTTTCACTTCACGCTGGTTCGAGGCTTCGCTCAGAAGCAGAGCCCCGGTGCATTATCGTCAAGATGTCATTTTGTTTCTCCTCTTTGAATGGTTCTTTATGATTATGCCACCATGTATTTATGACAAGCAAATGCGTGCACAGAGAGGAGATGTTCTCTGCACTTCTGAGCTTGAAGGGAAAGTATTGCATGTTTAAGAACTTATATTCAAGAGAATTTCGGGGGATGAAATCTTATGCGGCATTCGCTCGAGTATTGATATGTCAACCCCCCACCCCACCCACCGCCCCCAACCCCCGCAGATGCTTAAAAACTGACACGTCTTGAAGGTCACCGAGGATAAAGGACAGTTTGTGACGGACCGTCCCGGATGGAGCCTGACGGGATGACCCCTGGGACGATGGACGTTTGGTGTTATGAGAAGGGGGCGGGCTGGTGGGGACGGGAACAAAATGGCTTGGCTGTACGGTGCGATCTTCCCTTTTCTGTCAGTTATTCCTCTCGCCTTGGATAAGCATTCCAGGACTCCTGAGATTTTTACAACTTTGTGGTCCTTACTGAGAAATGAAAGCCCAGAGCCGAAGGACTGTACTGGACCTGACAGAGCAaagctttaataaaacatgaactgGTATCTCTCTTGCCTTATATGTACTGCAGTCtcccctcccctctctctctctctctcattctctcccGTGCATTTTCTGCAAGAGCCGACCTGGGGTTTTTAGAGCTCCtgctaaatgacaaaatgattgGGTTATGTATGAATGTAATTCTGCATGCTGCGATGTGGCATACATCAGGCGACGCGGCGCTGCAGACCCCGCAGACGGAGAGACTCTTGAGATGCATTGCGCACGCCGGGATGTCTCCGCTGCGGTCCAAACCGACGAAACGTTGTCTTGTTTGCAGGCCTGAGATGACCGGACGCGCTAGCATGGGACGCCGTTACCGCAGGTACACGAATCACAAAACGCATAGggtgtttcgttttttttttgttgcagtttCTCCTCCCCCCGGAGCTTCATCATCTGAGAGCAAACGACGGTGTGAGGGCGTAATGTCGCAGCACCTCGTATGCACTGCAATTTTATCCTGATCGATTTGcatattggtaaaaaaaaaaaaaaagaaaaaaaaaagggccttGCATGTAGTGAACGCAGAAAACGCCGGGCTGTTCCTTTCTGAGCCTCCGGTCCTTGTGGTTTTGAGGATGGTACATGTGtaaactgaatgaaatgaaGATGGATGATATACTGTGAATTAAATCCACTTCTTTACAAAGATGGTGATGAAAGTGACGGGCCtgatcttttgttttcttgccgtactctctcacacacacacacacacacacacacacacactcatgccgCTCCTCTGAGATTTCATTGAACCGCAGTGTCCTGGAAGGGCTGCGCAGAAACTCTGCAATGCACAACTGCTCTCACCTGCACATCACTGAACATGGCCGCTGGAAAtctcttcagtgtgtgtgtgtgtgtgtgtgtgtgtgcatacacaAAAATAGCACAAATGTCAAAGAATGATCTTATCTAACGACTGTTAACCGGGGTGATGGGACCGTATGTTATTAGTGTATATTAGTGTTTGTCAAAGTACTGTGTAATTCATTTGATGTTGATAGATTTCCAAAGTAAACACCAAGAGCTACGAATAAAAAGAAATGCCTCCTTTAAA

Function

symbol description
gjd2 Predicted to enable gap junction channel activity. Predicted to be involved in cell-cell signaling. Predicted to act upstream of or within action potential; chemical synaptic transmission; and visual perception. Predicted to be located in gap junction. Predicted to be part of connexin complex.

NR:

description
PREDICTED: gap junction delta-2 protein-like

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0055077 gap junction hemi-channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG:

id description
K07373 GJD2, CX36; gap junction delta-2 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262205.1 True 4440 mRNA 0.50 2 18270871 18276126

Neighbor

gene id symbol gene type direction distance location
fosaa fosaa,fos,LOC107723273,LOC107702235,LOC108423428,LOC107735358 coding downstream 312276 17952048 ~ 17958595 (-)
jdp2a jdp2,jdp2a,LOC107701522,LOC107589793,LOC107702236 coding downstream 321633 17939741 ~ 17949238 (-)
flvcr2a flvcr2,flvcr2a,LOC107702238,LOC107589770,LOC106591116 coding downstream 334647 17916202 ~ 17936224 (-)
ttll5 ttll5 coding downstream 359841 17833322 ~ 17911030 (-)
LOC122361798 ift43,LOC107723274 coding downstream 462714 17792213 ~ 17808157 (-)
aqr aqr coding upstream 5950 18282076 ~ 18311121 (-)
paplna papln,paplna coding upstream 37555 18313681 ~ 18341936 (-)
psen1 psen1,LOC107684238,LOC107753355,LOC107687832,LOC107723284 coding upstream 71299 18347425 ~ 18355107 (-)
trappc12 trappc12,LOC107684236,LOC107687835,LOC107753354,LOC107723257,LOC107589762 coding upstream 97864 18373990 ~ 18389654 (-)
ccr6b LOC107558470,LOC107753366,LOC107687955,LOC107758715,LOC107687848,LOC107589789 coding upstream 323099 18599225 ~ 18602734 (-)
G122019 NA non-coding downstream 47457 18223122 ~ 18223414 (-)
G121986 NA non-coding downstream 58455 18173717 ~ 18212416 (-)
G122013 NA non-coding downstream 62489 18202054 ~ 18208382 (-)
G122015 NA non-coding downstream 62520 18205506 ~ 18208351 (-)
G121987 NA non-coding downstream 99845 18166757 ~ 18171026 (-)
G122079 NA non-coding upstream 82616 18358742 ~ 18359108 (-)
G122081 NA non-coding upstream 93258 18369384 ~ 18369874 (-)
G122104 NA non-coding upstream 145488 18421614 ~ 18425369 (-)
G122114 NA non-coding upstream 150187 18426313 ~ 18426728 (-)
G122115 NA non-coding upstream 151829 18427955 ~ 18428405 (-)
LOC122361562 otofb,LOC107752720,LOC107701524,LOC107723281,LOC108423539 other downstream 266657 17982051 ~ 18004214 (-)
acyp1 acyp1 other downstream 306890 17962289 ~ 17963981 (-)
LOC122362005 crim1,LOC107582940,LOC107679775,LOC107662656 other downstream 2319433 15829484 ~ 15951438 (-)
LOC122362003 LOC107664362,LOC107560152,LOC107752022,LOC107658150 other downstream 2503856 15760343 ~ 15767015 (-)
G121456 LOC107660450 other downstream 2530385 15738262 ~ 15740486 (-)
LOC122361613 NA other upstream 3332 18279458 ~ 18281572 (-)
LOC122361943 NA other upstream 355131 18631257 ~ 18644992 (-)
G122247 NA other upstream 510756 18786882 ~ 18790880 (-)
LOC122362226 vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939,LOC107758712 other upstream 543537 18819663 ~ 18836620 (-)
ralgapa2 ralgapa2,LOC107687934 other upstream 871205 19147331 ~ 19282456 (-)

Expression


Co-expression Network