cdin1 (zgc:154061,LOC107665555,LOC107724250,LOC107678147,LOC107554791,LOC107568570)


Basic Information

Item Value
gene id cdin1
gene name zgc:154061,LOC107665555,LOC107724250,LOC107678147,LOC107554791,LOC107568570
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 17216049 ~ 17276543 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262314.1
GCCGTTTGAACCAATTCGCGGGAGTTGATCAGGAAGTGACGCTGTAGCGTGGCGCGAGCGGCGGAGGCTGCGGTGTTTACAGCGTTGTTGGgattttaaagtcttttatCGGGGCGTGTTTGTGATGGATTCTGTGTCCGCTGTCGCagACGAGGCGGTGAGCGGGAAGCAGATCTGCAGAGCGGAGTACCGGGCCATCGGCCGCTTCGTGGAGCAGCTGCGACCCACGAGACAGTGCATGCAGACGCTACGGACTCAGTTCCCACATCTTCCTGCGTCCACTCTTCTGAGCATCTTCTCCCAGGAGTACCAGaaGAGGATGAAGCGCAGCATGGCCAGGCATCACGCTCCTGACGTGCTCAGAGCATACTATCAGAGGTACCGCGGCGAAGCCGAGACTCGTCCTCAAGCGCCGCTTCTGCTGGAGCTCGCCAACCAGgtggaCCTGTCTCCGGCTCTGCTGGCCCGTCTGATGGTGGAGTGTTTTCTGGAGGAGAGCGAGGCTTCAGTCCCAGCTTCCAGACACATCCTCAACAACATGCTGCGCGAGCCGTATTTAATTCCTGACCTGCTGCTAGCGAAGCACGTCGAGCAGTGCACAGTAAATGACTGCTGTTATGGACCGCTGGTCGACTGCATCAAACATGCCATCGGTCTGGAGCACGAGGACCTGCTGAGAGACAAACTCAGAGAGAGGAGCCTGTCGTTCTTAGATGAGAACCAGCTCCGAGCCAAAGGCTACGACAAAACCCCTGACATCATTCTGGAGGTGCCCATCGCTGTTGATGGTCATATAGTCCACTGGATTGAGAGCAAAGCTTCATTTGGAGATGACCACAGCCATCACACCTACCTAAACGAGCAGTTCTGGAGCTACTGCAACAGGTTCGGCCCGGGGCTGGTCATCTACTGGTACGGGTTTGTGTCCGAGCTGGACTGCCAGCGGGAGCGAGGGATCCTGCTGAGAGACGGCTTCCCCTCGGACGTCGTGACCCTGTGTCAGGGGCCGGCACGGGGCCCGCTCTGACCCGGCACGGGGCCGCTCGTCGCTGTGGATGTGAATCCGGAAGCAATTTAGCTTTCCTGCAGCGTGAGACTCCTGGCAAACATCTGCGGTGAACTCCGGCTGAACCCGTCCTGCTGAGAGGCAGGTGACACGCTgctttcattgtttgttcagttATGAAGTGCAATAAAGTTATAAGTTCTTCATGTA
>XM_043262315.1
GCCGTTTGAACCAATTCGCGGGAGTTGATCAGGAAGTGACGCTGTAGCGTGGCGCGAGCGGCGGAGGCTGCGGTGTTTACAGCGTTGTTGGgattttaaagtcttttatCGGGGCGTGTTTGTGATGGATTCTGTGTCCGCTGTCGCagACGAGGCGGTGAGCGGGAAGCAGATCTGCAGAGCGGAGTACCGGGCCATCGGCCGCTTCGTGGAGCAGCTGCGACCCACGAGACAGTGCATGCAGACGCTACGGACTCAGTTCCCACATCTTCCTGCGTCCACTCTTCTGAGCATCTTCTCCCAGGAGTACCAGaaGAGGATGAAGCGCAGCATGGCCAGGCATCACGCTCCTGACGTGCTCAGAGCATACTATCAGAGGTACCGCGGCGAAGCCGAGACTCGTCCTCAAGCGCCGCTTCTGCTGGAGCTCGCCAACCAGgtggaCCTGTCTCCGGCTCTGCTGGCCCGTCTGATGGTGGAGTGTTTTCTGGAGGAGAGCGAGGCTTCAGTCCCTTCCAGACACATCCTCAACAACATGCTGCGCGAGCCGTATTTAATTCCTGACCTGCTGCTAGCGAAGCACGTCGAGCAGTGCACAGTAAATGACTGCTGTTATGGACCGCTGGTCGACTGCATCAAACATGCCATCGGTCTGGAGCACGAGGACCTGCTGAGAGACAAACTCAGAGAGAGGAGCCTGTCGTTCTTAGATGAGAACCAGCTCCGAGCCAAAGGCTACGACAAAACCCCTGACATCATTCTGGAGGTGCCCATCGCTGTTGATGGTCATATAGTCCACTGGATTGAGAGCAAAGCTTCATTTGGAGATGACCACAGCCATCACACCTACCTAAACGAGCAGTTCTGGAGCTACTGCAACAGGTTCGGCCCGGGGCTGGTCATCTACTGGTACGGGTTTGTGTCCGAGCTGGACTGCCAGCGGGAGCGAGGGATCCTGCTGAGAGACGGCTTCCCCTCGGACGTCGTGACCCTGTGTCAGGGGCCGGCACGGGGCCCGCTCTGACCCGGCACGGGGCCGCTCGTCGCTGTGGATGTGAATCCGGAAGCAATTTAGCTTTCCTGCAGCGTGAGACTCCTGGCAAACATCTGCGGTGAACTCCGGCTGAACCCGTCCTGCTGAGAGGCAGGTGACACGCTgctttcattgtttgttcagttATGAAGTGCAATAAAGTTATAAGTTCTTCATGTA
>XM_043262316.1
GTTTGAACCAATTCGCGGGAGTTGATCAGGAAGTGACGCTGTAGCGTGGCGCGAGCGGCGGAGGCTGCGGTGTTTACAGCGTTGTTGGgattttaaagtcttttatCGGGGCGTGTTTGTGATGGATTCTGTGTCCGCTGTCGCagaTAGTATCTCTGACTAATGTCGTCGCACCGTGAGCGATCCTCGATGGAAAGCGTGTTCGTTCAGCTCCACGTCATGTGTGTGACTGGTTTGGTGTTTTCTCTGCTCCAGACGAGGCGGTGAGCGGGAAGCAGATCTGCAGAGCGGAGTACCGGGCCATCGGCCGCTTCGTGGAGCAGCTGCGACCCACGAGACAGTGCATGCAGACGCTACGGACTCAGTTCCCACATCTTCCTGCGTCCACTCTTCTGAGCATCTTCTCCCAGGAGTACCAGaaGAGGATGAAGCGCAGCATGGCCAGGCATCACGCTCCTGACGTGCTCAGAGCATACTATCAGAGGTACCGCGGCGAAGCCGAGACTCGTCCTCAAGCGCCGCTTCTGCTGGAGCTCGCCAACCAGgtggaCCTGTCTCCGGCTCTGCTGGCCCGTCTGATGGTGGAGTGTTTTCTGGAGGAGAGCGAGGCTTCAGTCCCAGCTTCCAGACACATCCTCAACAACATGCTGCGCGAGCCGTATTTAATTCCTGACCTGCTGCTAGCGAAGCACGTCGAGCAGTGCACAGTAAATGACTGCTGTTATGGACCGCTGGTCGACTGCATCAAACATGCCATCGGTCTGGAGCACGAGGACCTGCTGAGAGACAAACTCAGAGAGAGGAGCCTGTCGTTCTTAGATGAGAACCAGCTCCGAGCCAAAGGCTACGACAAAACCCCTGACATCATTCTGGAGGTGCCCATCGCTGTTGATGGTCATATAGTCCACTGGATTGAGAGCAAAGCTTCATTTGGAGATGACCACAGCCATCACACCTACCTAAACGAGCAGTTCTGGAGCTACTGCAACAGGTTCGGCCCGGGGCTGGTCATCTACTGGTACGGGTTTGTGTCCGAGCTGGACTGCCAGCGGGAGCGAGGGATCCTGCTGAGAGACGGCTTCCCCTCGGACGTCGTGACCCTGTGTCAGGGGCCGGCACGGGGCCCGCTCTGACCCGGCACGGGGCCGCTCGTCGCTGTGGATGTGAATCCGGAAGCAATTTAGCTTTCCTGCAGCGTGAGACTCCTGGCAAACATCTGCGGTGAACTCCGGCTGAACCCGTCCTGCTGAGAGGCAGGTGACACGCTgctttcattgtttgttcagttATGAAGTGCAATAAAGTTATAAGTTCTTCATGTA

Function

NR:

description
PREDICTED: uncharacterized protein C15orf41 homolog

GO: NA

KEGG:

id description
K24865 CDIN1; CDAN1-interacting nuclease 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262314.1 False 1216 mRNA 0.57 12 17216049 17276543
XM_043262315.1 False 1213 mRNA 0.57 12 17216049 17276543
XM_043262316.1 True 1322 mRNA 0.56 12 17216049 17276540

Neighbor

gene id symbol gene type direction distance location
spred1 LOC107724258,LOC107677686,LOC107749536,LOC107698617,LOC107573584 coding downstream 161751 17036069 ~ 17054298 (-)
fam98b LOC107698618,LOC107568575,LOC107749537 coding downstream 181647 17029621 ~ 17034402 (-)
atxn3 atxn3,LOC107687604 coding downstream 201569 17005300 ~ 17014480 (-)
serpina10b LOC107573596,LOC107575705,LOC107677687,LOC107573588 coding downstream 211391 17001561 ~ 17004658 (-)
ddx24 ddx24 coding downstream 216199 16992237 ~ 16999850 (-)
angel1 angel1 coding upstream 189327 17465870 ~ 17505049 (-)
LOC122362317 LOC107588350 coding upstream 246431 17522974 ~ 17528811 (-)
dlst dlst,LOC107702243,LOC107724251,LOC107749530,LOC107678142 coding upstream 267287 17543830 ~ 17559163 (-)
esrrb esrrb,LOC107678144 coding upstream 361047 17637590 ~ 17690815 (-)
LOC122361798 ift43,LOC107723274 coding upstream 515670 17792213 ~ 17808157 (-)
G121734 NA non-coding downstream 771 17215055 ~ 17215278 (-)
G121721 NA non-coding downstream 5789 17168223 ~ 17210260 (-)
G121717 meis2,LOC107724236 non-coding downstream 58820 17150512 ~ 17157229 (-)
G121711 meis2,meis2a,LOC107698619 non-coding downstream 67021 17136870 ~ 17149028 (-)
G121715 NA non-coding downstream 83323 17132518 ~ 17132726 (-)
G121799 NA non-coding upstream 76869 17353412 ~ 17602299 (-)
G121852 NA non-coding upstream 306360 17582903 ~ 17583589 (-)
G121854 NA non-coding upstream 343677 17620220 ~ 17620671 (-)
G121905 tgfb3,LOC107688075,LOC107723269 non-coding upstream 514399 17790942 ~ 17810401 (-)
G121965 NA non-coding upstream 728731 18005274 ~ 18005603 (-)
LOC122362005 crim1,LOC107582940,LOC107679775,LOC107662656 other downstream 1264611 15829484 ~ 15951438 (-)
LOC122362003 LOC107664362,LOC107560152,LOC107752022,LOC107658150 other downstream 1449034 15760343 ~ 15767015 (-)
G121456 LOC107660450 other downstream 1475563 15738262 ~ 15740486 (-)
G121438 LOC107708961,LOC107664629,LOC107654010,LOC107719547 other downstream 1526255 15688891 ~ 15689794 (-)
LOC122361708 LOC107598628,LOC107708961,LOC107654010,LOC107719547,LOC107664629,LOC107557341 other downstream 1527609 15683661 ~ 15688440 (-)
acyp1 acyp1 other upstream 685746 17962289 ~ 17963981 (-)
LOC122361562 otofb,LOC107752720,LOC107701524,LOC107723281,LOC108423539 other upstream 705508 17982051 ~ 18004214 (-)
LOC122361613 NA other upstream 1002915 18279458 ~ 18281572 (-)
LOC122361943 NA other upstream 1354714 18631257 ~ 18644992 (-)
G122247 NA other upstream 1510339 18786882 ~ 18790880 (-)

Expression


Co-expression Network