XLOC_006729 (BX470107.1)


Basic Information

Item Value
gene id XLOC_006729
gene name BX470107.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 32023488 ~ 32063016 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012958
CCTATAATCGTTTCCATCCCTCCATCTTAAAAcagagaagaagaggaggaggattcTGGCTCggcgagagagagagacagaagacAGAGAAAAAAGGGGCCTCCATCATAAAGAATGTAATACTGCCACTGTTGAACATCAGCAGGGAGCTGCAGGCAGAAGCCCTTCAGAGAAACTGTCCAGCTGCACCTGTAGGCAGAAGCTGATGGGATTAAACTTTACACATGGAAGCAAAGTGTCACAAACTTACTCCGGGCTTTCCTGTGACTTTCAGGAAAGCTGCCATAAGATCCTGCAAGGAGACGCAATGGCAAAGTGAGCTGTGAATGGGCGGAGAACAGCCAGGACTCCGGCGCTGACCTGAGGGGAAAAGCACGGCCCTGCCAAGAACACAAAGACTTTGAGATGACAGCGACTGTGCTGAGCAATCCCACATTAAACACATAAGCCTGTTTGCTTGGAGGAAAAATGGATTGCCTCTGTGAGATCAAAACTCCAGTCTCCTGATGCATGAGGTGATTTGCATTTGTAAACTGAGTGTTTGGGGCCTTGTTAGCTCTTAGACAGATGTGTAAAGGTTGTACGCACATTTGTAaggcatagttcatccaaaaatgaagatGTGctaataatttactcactct
>TCONS_00013490
TTCCTCTGGCCGCCAGGAAACTGTCCAGCTGCACCTGTAGGCAGAAGCTGATGGGATTAAACTTTACACATGGAAGCAAAGTGTCACAAACTTACTCCGGGCTTTCCTGTGACTTTCAGGAAAGCTGCCATAAGATCCTGCAAGGAGACGCAATGGCAAAGTGAGCTGTGAATGGGCGGAGAACAGCCAGGACTCCGGCGCTGACCTGAGGGGAAAAGCACG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117212

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012958 False 644 lncRNA 0.47 3 32023488 32063016
TCONS_00013490 True 222 lncRNA 0.53 2 32023755 32042410

Neighbor

gene id symbol gene type direction distance location
XLOC_006728 NA coding downstream 24476 31983061 ~ 31999012 (-)
XLOC_006727 NA coding downstream 67690 31950157 ~ 31955798 (-)
XLOC_006726 utp25 coding downstream 84848 31925254 ~ 31938640 (-)
XLOC_006725 syt14a coding downstream 135001 31844011 ~ 31888487 (-)
XLOC_006724 sertad4 coding downstream 193702 31805824 ~ 31829786 (-)
XLOC_006730 NA coding upstream 6882 32069898 ~ 32455993 (-)
XLOC_006731 NA coding upstream 394915 32457931 ~ 32567256 (-)
XLOC_006732 NA coding upstream 429051 32492067 ~ 32494872 (-)
XLOC_006733 kcns3a coding upstream 512761 32575777 ~ 32577386 (-)
XLOC_006734 wdr35 coding upstream 517366 32580382 ~ 32626247 (-)
XLOC_006471 BX537274.2 misc downstream 21758583 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 31197263 825904 ~ 826225 (-)
XLOC_006723 NA non-coding downstream 223082 31800032 ~ 31800406 (-)
XLOC_006722 BX537123.1 non-coding downstream 328441 31694931 ~ 31695047 (-)
XLOC_006718 BX537123.2 non-coding downstream 443924 31579448 ~ 31579564 (-)
XLOC_006738 CU019663.1 non-coding upstream 730848 32793864 ~ 32807641 (-)
XLOC_006741 NA non-coding upstream 883695 32946711 ~ 32996496 (-)

Expression


Co-expression Network