LOC122361585


Basic Information

Item Value
gene id LOC122361585
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 20526019 ~ 20527575 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262390.1
ATGGATGTTGATGAATCCTCCTTACAAACTGAACTGGATAAATGGTGTCAGAAAGCAATAGTTGATCAGAAACATGCAGTATTACTGTTGGATGTGCCTGCAGATTTGGAAGTCGCAAAAATTGAAGAAACAGTACAAATAGTCAAAGCTCTGGGAAGAGTAAGAGTCAGGGATTATAAAGAAGGACCAACACCAGGATTTCTACATGTGCTGTGTGAATGCAGAGAAGTTGTTGATTCTGCAAGCCTACCTGTAGAAGTAATACCTGCAGAGGGTGGGAAGCCTTGGAAGATAGTTGCAGCGGAAAAAGCTGAGTTGCCACCTCCTGGATTTGCTGAAAAACTGTCAAATCTGCTAATACAGGAAGGAAAGTCTGTCTCTGAGCTACAAGCTATGTTCTCTTCACCCAGTTCCAACGCAGGGTCTCCAGAAGCTATAATCCGTGCGGTGGGTGAGCTGCTGGAAAAGACTTCGAAGCCTGTCAGTGATGGAAGTGCATACCGACGTTTGAGAGTTTTTTCAGGTACTGTCCCTATTCCGGCAGGGGAAGAAGCCTTAGAGACCTGGATGGATCAAGCTAGAATGATGGTCATGGAGTGTGAATGCTCAGAGAAGGAGAAGCGCAGGCAGATCATTGAAAGTCTGAAGGGTTCAGCCCTGGATGTTGTGAAGTCTATCAGATTTGCTGATCCAGACGCACCTTCTCTTCAGTATCTTGAGGCTTTGGATGGGGCTTTTGGAACTCCTGAATCAGGAgaagatttatattttgctttcagGTTGTTAAGGCAGAATCCAGATGAAGCACTTTCTGATTTCTTGAAGAGAATGGAGAAATCTCTGACAAGGGTAGCACAAAAAGGTGGGTTGCCTGGAAACAATGTTGATAGAACAAGAATTGAGCAGCTAATTCGAGGAGCTGTTGAATCTGACTTGTTGTTACTTCAGTTGCGTTTGAGAGAGCGAAGAGAAAATCCACCTTCCTTTTTAGCTCTCTTGAATGAGATCAGGGAGGCTGAAGAAAGCGAAGCTGCCAGATACAGTCTGGGAGTCACTTTCAAACCCGTCCCACGACCACGACAGAAACTTTCTAGTCTGGCTGCAGTGAGAGAATTAAAGGCTGAGATTCAAGAGCTGCAGACCAAAGTAACCGAGGAACCTTCTAAAGTACCTGTGTCAGAGACAATTTTGGAGTCAAAGCCAGTACCAAGAAGAAGAGAAGCTGACTCACCGGTAGACTTAGAGGTACAGTCACTAAAGAGGCAGGTGCAAAGACTAGAAGAGCAGCTGGTTTCACTGAGTGTCAGACAGTCCTCACAAATATCCAAAGAACCATCACCAGAGCAGGCTGTTGCTTCTGCAAAACCAAGATTTGAAGTGACTAAAGAAGATTACTTCTGCTACAAATGTGGGGAAGATGGCCACATTGCTCCAAGATGCAAGGCTACTGAGAATTACAGCCTGGTGATACAGAAGCTTGTGCGATCATTAAGAAAGACCCATAACAGTTGTACACAGAGGGATAGTTATCCATCTGCCAAATTCCTCAAAGATTGA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030163 protein catabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262390.1 True 1557 mRNA 0.45 1 20526019 20527575

Neighbor

gene id symbol gene type direction distance location
LOC122362405 NA coding downstream 256317 20269585 ~ 20269702 (-)
LOC122362424 NA coding downstream 265193 20260708 ~ 20260826 (-)
LOC122362404 NA coding downstream 266702 20259199 ~ 20259317 (-)
LOC122362406 NA coding downstream 268222 20257678 ~ 20257797 (-)
LOC122362416 NA coding downstream 271249 20254652 ~ 20254770 (-)
LOC122361502 asns,LOC107731557,LOC107702657,LOC107754811,LOC107672863,LOC108410560 coding upstream 123013 20650588 ~ 20659108 (-)
LOC122361508 aspg,LOC107739215 coding upstream 152887 20680462 ~ 20688555 (-)
LOC122361456 NA coding upstream 171486 20699061 ~ 20725343 (-)
LOC122361586 LOC107739219,LOC107679812,LOC107662604,LOC107732422,LOC107586859,LOC107679809,LOC107559908 coding upstream 260535 20788110 ~ 20798977 (-)
LOC122361898 LOC107679809,LOC107739222,LOC107559908 coding upstream 267446 20795021 ~ 20797384 (-)
G122594 NA non-coding downstream 358378 20167024 ~ 20167641 (-)
G122566 NA non-coding downstream 706832 19818960 ~ 19819187 (-)
G122556 NA non-coding downstream 726621 19798722 ~ 19799398 (-)
G122508 NA non-coding downstream 933355 19581444 ~ 19592664 (-)
G122387 NA non-coding downstream 1021188 19504031 ~ 19504831 (-)
G122628 NA non-coding upstream 67731 20595306 ~ 20640412 (-)
G122646 NA non-coding upstream 130905 20658480 ~ 20666670 (-)
G122754 NA non-coding upstream 327547 20855122 ~ 20857658 (-)
G122775 NA non-coding upstream 330696 20858271 ~ 20861117 (-)
G122783 NA non-coding upstream 347197 20874772 ~ 20875152 (-)
LOC122362030 cldn20,tfb1m,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299,LOC108269830,LOC107680107,LOC107728964,LOC107675319 other downstream 472880 19824459 ~ 20053139 (-)
ralgapa2 ralgapa2,LOC107687934 other downstream 1243563 19147331 ~ 19282456 (-)
LOC122362226 vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939,LOC107758712 other downstream 1689399 18819663 ~ 18836620 (-)
G122247 NA other downstream 1735139 18786882 ~ 18790880 (-)
LOC122361943 NA other downstream 1881027 18631257 ~ 18644992 (-)
LOC122362234 kif26a,kif26ab,LOC107739214,LOC107662598,LOC107732702,LOC107559913,LOC107586892 other upstream 29148 20556723 ~ 20636159 (-)
aspg aspg,LOC107586863,LOC107739215,LOC107732472,LOC107662599 other upstream 230141 20757716 ~ 20770229 (-)
nenf nenf,LOC107739254,LOC107664444,LOC107732830,LOC107662615,LOC107586886 other upstream 387626 20915201 ~ 20916639 (-)
tmem63c tmem63c,LOC107732232 other upstream 550486 21078061 ~ 21116556 (-)
G123095 NA other upstream 1213943 21741518 ~ 21742973 (-)

Expression


Co-expression Network