LOC122361586 (LOC107739219,LOC107679812,LOC107662604,LOC107732422,LOC107586859,LOC107679809,LOC107559908)


Basic Information

Item Value
gene id LOC122361586
gene name LOC107739219,LOC107679812,LOC107662604,LOC107732422,LOC107586859,LOC107679809,LOC107559908
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 20788110 ~ 20798977 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262391.1
ttcaaaCGGAAAAAAAATGCCTCCACCTCCTTTGAACCACCAAAATCGCACGAATGAATCCACCACTAAAGATGAAACAGGTACTCTTGACGTCCCTTTAAAATTCTTGGATCAGGACTACCAGGAGCTGCAGAAGACGAGCATCTCCAGTAAGATTGGATTTGTTGATGACAAATTCCCTGCAGACGGCAGCTCCATTGACCCACAGAAGAAACTTAAACTGGATCTGGACCAAATCAAGTGGTTGAGACCATCAAAAATAGTGTCAGACCCTCAGCTCATTGTACAGGGGGTGTCCAGGTTTGACTACTCCCAAGGATCTTATTTAGGAAACTGCTGGTTTCTAGCTCCGGTTGGGGCTTTAACATTTCAGAAGGACATCGTGGACCAGGTCATGCCAGCTGACCAGTCATTTGGTAAAGATTATGCAGGGATATTCCACTTCAGATTCTGGCGGTTTGGGAAATGGATTGATGTTGTCATTGATGACAGACTACCAACGGTCAAAGGAAAActcatttttgttcattcaaaaacatctaATGAGTTTTGGCCTGCCTTACTGGAGAAAGCTTATGCCAAGGTGTGCGGCTCCTATGCTGACATGCAAGCTGGTTGTGTATCGGAGGCTCTGCTGGACTTCACCGGTGGTGTCCACGTGTACTTCAAACTGAATCAAACTTCTACTGATTTGTGGAGCCTGATGGACCGTGCGGTCAATGCAAAGGCCCTTATGGGCTGCAGCACTTCTCATGGGGATACCCTTGGAAACCCAATATTACCCAATGGCATTGTTCAAGGCCATGCATATACAGTGACAGGGGTTTTCAAGCTAACATCCCAAGGAGAGCCGGTGAGGCTGGTGAGAGTGTTGAACCCTTGGGGAAAAGGCGAGTGGAACGGTGCCTGGAGTGACAAGCCTGATTCTTTGGATGTTTTAGAGACTTTCTGGACAAACCCTCAGTTTCGAATAAGGATTGAGCAGCTTGATGAGGAATGTGCCAGTGGCCAGTGTCCTGAAAACATTCTGGTGTCCCTCATGCAGCTCCATGAGAACAGATACAGAAGTCTTGTTTCTAACTTCTCCATTGGCTTCAGCGTTTATCTGATACCACCAGAGATGAAAGAGGAGAAGTTCCCAGCCAAGTTCTTCTATAATAAACACCCTGTGGAAGCTACCGAAAAATTTACCCAAGTGAGACTTGTGATGAAATTATTCAAGCTTGAACCAGGAGAGTATCTCATTGTACCATCCACTTTTAATCCTAACGAGTCTGCAGAATTCATGCTGTCCATCTCCACAAAGATATATCCTGAAAAACAGACTTTTGCAACTGAAAAAATGCCTCCACCTCGTGTAATCAAGAAAGCCAAGAATGAATCCGCCGCAAATGAAAACACGGGCACTCTCGACGACCCTGTGAAATTCTTGGATCAGGACTACCAGCAGTTAAAGAAAAGCTGCTTCGCCAATAAAACAAGATTTGTTGATGAACAGTTCCCTCCAGACGGCAGCTCCATTGACCCACAGAAGAAACTTAAATTAGATCTGAACCAAATCGAGTGGTTGAGACCATCAaaaatagtgTCAGACCCTCAGCTCATTGTACAGGGGGTGTCCAGGTTTGACTACTCCCAAGGATCTTATTTaggaaactgCTGGTTTCTAGCTTCGGTTGGGGCTTTAACATTTCAGAAGGACATCGTGGACCAGGTCATGCCAGCTGACCAGTCATTTGGTAAAGATTATGCAGGGATATTCCACTTCAGATTCTGGCACTTTGGTAAATGGACTGATGTTGTCATTGACGACAAGCTGCCAACAATCAATGGCGGActcatttttgttcattcaaaaacaactaATGAGTTTTGGCCTGCCTTACTGGAGAAAGCTTATGCCAAGGTGTGCGGCTCCTATGCTGACTTGCATGCTGGTCGTGTATCGGAGGCTCTGCTGGACTTCACCGGTGGTGTCCACGTGTGCCTTGAACTAGAAAAACCTGCCATTGATTTGTGGAACCTGATGGACCGTGCAGCTAAAGCTAAGGGTCTGATGGCCTGTGGCACCCGTCAGGGGGACAAATCTGAGAATATATTACCCAATGGTATTGTTCAAGGCCACGCGTATACAGTGACGGGGGTTTTTAAGGTAACATGCCAAGAAAAGCCAGTGAAGCTGGTGAGAGTGTTGAATCCGTGGGGAAGAGGCGAGTGGAACGGTGCCTGGAGTGACAAGTCAACTTTGTGGAACAAAGTAAGCGAGAAGGAGCAAATAAAGTGTCGTTCCTTGGCCAATGATGGGGAGTTCTGGATGTCAATGGAGGACTTCACCAAAAACTTCGAAGAGGTTGATATTTGCTGCCTCCAACCAGATTTTTTGGACAATTCCTCTAAATGTATTTGGACAACTACATGCTACAATGGTATCTGGGAATCTGGGACTACAGCTGGTGGCTGCACCAATAATAAAGAATCCTTCTGGACAAACCCTCAGTATCGAGTAAAGATCGAGGAGCTTGATGAGGAATGTGCCAGTGGCCAGTGTCGTGAAAACATTCTGGTGTCCCTCATGCAGCTCCATGAGAACAGATACAGAAGTCTAGTTTCTAACTTCTCCATTGGTTTCAATGTTTATCTGaTACCACCAGAGAGTAAAGATGAGAAGTTCTCTGCCAAGTTCTTCTACCGCAGACGTTCCGTGGAAGATAGCGGGAACTTCATTAACTCAAGACATGTGATGAAATTCTTCAAGCTTGAACCAGGAGAGTATCTCATTGTGCCCTCTACTTTCCATCCTAATGAGTGTACAAAGTTCACGCTGTCCATCTTCACAAAGGCTGAATCGCATAGGAGTAAAAAGAAACCAGCTATGACATATGTGTGAGGTTATTATAAATGCTTCAACTATCTTCTAGCACTTCAGCAGATCATCGTCTGGTTACCCTCTTGCCAACAAGTAACAACTCAAATAGGATTTGGAGTAAGCGAGCTGCAATGTTTTTCTTCTGCGACCCTTCTGTTCaatatattgttcatttgtgAGCTGTGAAATAATTGCTAcctttgctgtttgtttgtttgtttactaaCATCAACAGGTTTTGATGTTCTGTCTCACTGTAACGGTATCAATCGGTCACTGTAAGAGAAACTTCAGTGCAGTCAgaattaatgaataaagtaTAATACACATGCTTCTCAA

Function

NR:

description
PREDICTED: calpain-1 catalytic subunit-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262391.1 True 3205 mRNA 0.45 22 20788110 20798977

Neighbor

gene id symbol gene type direction distance location
LOC122361456 NA coding downstream 62767 20699061 ~ 20725343 (-)
LOC122361508 aspg,LOC107739215 coding downstream 99555 20680462 ~ 20688555 (-)
LOC122361502 asns,LOC107731557,LOC107702657,LOC107754811,LOC107672863,LOC108410560 coding downstream 129002 20650588 ~ 20659108 (-)
LOC122361585 NA coding downstream 260535 20526019 ~ 20527575 (-)
LOC122362405 NA coding downstream 518408 20269585 ~ 20269702 (-)
vcpkmt vcpkmt,LOC107559878,LOC107687351 coding upstream 1076 20800053 ~ 20801973 (-)
si:ch211-202f3.4 si:ch211-202f3.4,LOC107732402,LOC107662605,LOC107559907,LOC107586858,LOC107739220 coding upstream 4180 20803157 ~ 20813946 (-)
LOC122361695 si:ch211-202f3.3,LOC107732416,LOC107559906,LOC107664433,LOC107662629,LOC107739218,LOC107586857 coding upstream 26001 20824978 ~ 20837545 (-)
LOC122361693 si:ch211-202f3.3,LOC107739218,LOC107664433,LOC107586857,LOC107559906,LOC107732416,LOC107662629 coding upstream 40649 20839626 ~ 20846832 (-)
marc1 LOC107662611,LOC107732350,LOC107586856,LOC107559876 coding upstream 84117 20883094 ~ 20886023 (-)
G122646 NA non-coding downstream 121440 20658480 ~ 20666670 (-)
G122628 NA non-coding downstream 147698 20595306 ~ 20640412 (-)
G122625 NA non-coding downstream 259199 20525065 ~ 20528911 (-)
G122594 NA non-coding downstream 620469 20167024 ~ 20167641 (-)
G122566 NA non-coding downstream 968923 19818960 ~ 19819187 (-)
G122754 NA non-coding upstream 56145 20855122 ~ 20857658 (-)
G122775 NA non-coding upstream 59294 20858271 ~ 20861117 (-)
G122783 NA non-coding upstream 75795 20874772 ~ 20875152 (-)
G122786 NA non-coding upstream 81029 20880006 ~ 20880453 (-)
G122788 NA non-coding upstream 87211 20886188 ~ 20886913 (-)
aspg aspg,LOC107586863,LOC107739215,LOC107732472,LOC107662599 other downstream 17881 20757716 ~ 20770229 (-)
LOC122362234 kif26a,kif26ab,LOC107739214,LOC107662598,LOC107732702,LOC107559913,LOC107586892 other downstream 151951 20556723 ~ 20636159 (-)
LOC122362030 cldn20,tfb1m,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299,LOC108269830,LOC107680107,LOC107728964,LOC107675319 other downstream 734971 19824459 ~ 20053139 (-)
ralgapa2 ralgapa2,LOC107687934 other downstream 1505654 19147331 ~ 19282456 (-)
LOC122362226 vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939,LOC107758712 other downstream 1951490 18819663 ~ 18836620 (-)
nenf nenf,LOC107739254,LOC107664444,LOC107732830,LOC107662615,LOC107586886 other upstream 116224 20915201 ~ 20916639 (-)
tmem63c tmem63c,LOC107732232 other upstream 279084 21078061 ~ 21116556 (-)
G123095 NA other upstream 942541 21741518 ~ 21742973 (-)
LOC122362121 gskip,LOC107731910,LOC107561679,LOC107664426 other upstream 944713 21743690 ~ 21748036 (-)
G123216 NA other upstream 1071742 21870719 ~ 21871201 (-)

Expression


Co-expression Network