atxn3 (atxn3,LOC107687604)


Basic Information

Item Value
gene id atxn3
gene name atxn3,LOC107687604
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 17005300 ~ 17014480 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262643.1
GCGAATTGTATTTATGacttatatttctgtttctgacATGTTCCTCGCCCGTAAACGAGAGATGTGTCCGCGTGTCGGCGTATCTTTACACGAAACGGTTCGGTCGGGTTTATGTGAAGGGCTCTTGGACTTTCCTCGACTGTCAACAATCAGAAAAGGACTGATATGTTTGTTTACTGTCACAcaagagggctctCTGTGTGCGCAGCACTGCTTGAACAACCTCCTGCAGGGAGAGTACTTCAGTCCGGTGGAGCTGTCGTCCATCGCTCAGCAGCTGGACGAGGAGGAGCGCATGCGCATGGCTGAAGGAGGCGTGCAGACCGAGGAGTACAGGACCTTTCTGCAGCAACCGTCTGGAAACATGGACGACAGCGGCTTCTTCTCCATCCAGGTGATCAGCAACGCTCTAGGAGTTTGGGGTTTAGAGATCGTTCTCTTCAACAGCAGAGAGTACCAGCAGTTACAGATCGATCCCATACATGAGAAGGCCTTTATATGTAACTATAAGGAGCACTGGTTCACGGTGCGTAAGCTGGGACAGCAGTGGTTTAATCTGAACTCACTGCTGACCGGACCAGAGCTCATATCAGACACTTACTTGGCTCTTTTCTTAGCGCAGCTGCAACAGGAAGGTTATTCCATCTTTGTGATCCGGGGGAGCCTGCCGGACTGTGAAGCTGATCAGATTTTGCGGATCATGCGAGttgagcagcagcagcggcCCAAGCTGATCGGAGAGGACGAGGCCCAGAGgATGTCAGTGCAGCAGGCGTCCGACCCCGGACACACCACAGATGAAGTGCTGctggatgaggatgaggaggagctGAGGAAGGCTCTggctctcagcagacaggacaTGGAGGTGGAGGACGAGGAGGCTGACCTTCGCAGAGCCATTCAGCTCAGTATGGCAGGTGGCAGCGATCCCAGAAGCCCCAGCGCCACGGTGACGGCCGGCTCGTCTCAGTCAGGAAGCACCGAGAAGGAGGCGCTGACGGCCGAGGAGCTGCGCAGGAGGAGACAGGCGTACTTCGACAGGCAGCAAGCTCAGTCCTCCGCTCACGACAGGAGCGCCGCCGaCGGAGGGAAGGACAGCGGGACCAAACCCAACCAGTGACAGTCCCTCAGCGCCGGTGACAGACGCCCTCGACCCGACCTCTCTTTGGGAATGATGGGACTCACATCTCCTCTCAGAACTGCCCGGGACCGATCGGGTCCCACTGTGTAATAAAGGGACATTCGTTTAGCTTCGCTTCTCCTCTTTGAGTTGAACGAGGTGAAAGGGAAGCGTCTCCCCGGTTCATTCCTCTTCCTCAGACGGACCACGAGCGTGAGGACGGAGCGGTCAGTGCTCGGGTCACTCCTGCATTCTGGGACCACTGGGCTTTACTGGGGTTACTGGATCTCTCTGCTCTTCTCCTCTGTGGACTATAGTGAAGAACTTCTGCTGTCACCGGTGAGCGGCGGGTGACGTGCCCTAGGTAGACAGCATAGTGAGGGCAGACGCTGATGTGGAGTTCAGTCTTCGTTCAGATTCAGATCTTCACTTGTTTTAACCGTTCATCAATCGTTCCTCTTTTGCTGACCGGAAGCAGCTCTTTTGAATCTAGTTTGTGATTTCTCATGGTTTTCACATTCTTTTCTATAATTTCATACGTCTGGTGGCACAGCAGCGTTTCTGAACTCGTTTCACATTCTGCAATAGTTTTTAAGTGATTGGTTATTCTTGCACTCCTATATACACTTattgtttcttaaataaaaaaaaaatcttttttttcctgaaa
>XM_043262644.1
GTTTCCGGCCGTTCCGTCATTCACACTTTCAAACATGGAGTCTATATTCCACGAAAAAcaagagggctctCTGTGTGCGCAGCACTGCTTGAACAACCTCCTGCAGGGAGAGTACTTCAGTCCGGTGGAGCTGTCGTCCATCGCTCAGCAGCTGGACGAGGAGGAGCGCATGCGCATGGCTGAAGGAGGCGTGCAGACCGAGGAGTACAGGACCTTTCTGCAGCAACCGTCTGGAAACATGGACGACAGCGGCTTCTTCTCCATCCAGGTGATCAGCAACGCTCTAGGAGTTTGGGGTTTAGAGATCGTTCTCTTCAACAGCAGAGAGTACCAGCAGTTACAGATCGATCCCATACATGAGAAGGCCTTTATATGTAACTATAAGGAGCACTGGTTCACGGTGCGTAAGCTGGGACAGCAGTGGTTTAATCTGAACTCACTGCTGACCGGACCAGAGCTCATATCAGACACTTACTTGGCTCTTTTCTTAGCGCAGCTGCAACAGGAAGGTTATTCCATCTTTGTGATCCGGGGGAGCCTGCCGGACTGTGAAGCTGATCAGATTTTGCGGATCATGCGAGttgagcagcagcagcggcCCAAGCTGATCGGAGAGGACGAGGCCCAGAGgATGTCAGTGCAGCAGGCGTCCGACCCCGGACACACCACAGATGAAGTGCTGctggatgaggatgaggaggagctGAGGAAGGCTCTggctctcagcagacaggacaTGGAGGTGGAGGACGAGGAGGCTGACCTTCGCAGAGCCATTCAGCTCAGTATGGCAGGTGGCAGCGATCCCAGAAGCCCCAGCGCCACGGTGACGGCCGGCTCGTCTCAGTCAGGAAGCACCGAGAAGGAGGCGCTGACGGCCGAGGAGCTGCGCAGGAGGAGACAGGCGTACTTCGACAGGCAGCAAGCTCAGTCCTCCGCTCACGACAGGAGCGCCGCCGaCGGAGGGAAGGACAGCGGGACCAAACCCAACCAGTGACAGTCCCTCAGCGCCGGTGACAGACGCCCTCGACCCGACCTCTCTTTGGGAATGATGGGACTCACATCTCCTCTCAGAACTGCCCGGGACCGATCGGGTCCCACTGTGTAATAAAGGGACATTCGTTTAGCTTCGCTTCTCCTCTTTGAGTTGAACGAGGTGAAAGGGAAGCGTCTCCCCGGTTCATTCCTCTTCCTCAGACGGACCACGAGCGTGAGGACGGAGCGGTCAGTGCTCGGGTCACTCCTGCATTCTGGGACCACTGGGCTTTACTGGGGTTACTGGATCTCTCTGCTCTTCTCCTCTGTGGACTATAGTGAAGAACTTCTGCTGTCACCGGTGAGCGGCGGGTGACGTGCCCTAGGTAGACAGCATAGTGAGGGCAGACGCTGATGTGGAGTTCAGTCTTCGTTCAGATTCAGATCTTCACTTGTTTTAACCGTTCATCAATCGTTCCTCTTTTGCTGACCGGAAGCAGCTCTTTTGAATCTAGTTTGTGATTTCTCATGGTTTTCACATTCTTTTCTATAATTTCATACGTCTGGTGGCACAGCAGCGTTTCTGAACTCGTTTCACATTCTGCAATAGTTTTTAAGTGATTGGTTATTCTTGCACTCCTATATACACTTattgtttcttaaataaaaaaaaaatcttttttttcctgaaa

Function

symbol description
atxn3 Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within proteolysis. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Machado-Joseph disease. Orthologous to human ATXN3 (ataxin 3).

NR:

description
ataxin-3-like, partial

GO:

id name namespace
GO:0008242 omega peptidase activity molecular_function

KEGG:

id description
K11863 ATXN3, MJD; Ataxin-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262643.1 True 1793 mRNA 0.53 11 17005300 17014405
XM_043262644.1 False 1667 mRNA 0.53 11 17005300 17014480

Neighbor

gene id symbol gene type direction distance location
serpina10b LOC107573596,LOC107575705,LOC107677687,LOC107573588 coding downstream 642 17001561 ~ 17004658 (-)
ddx24 ddx24 coding downstream 5450 16992237 ~ 16999850 (-)
asb2b LOC107677683,LOC107751298 coding downstream 19195 16978538 ~ 16986105 (-)
LOC122362116 NA coding downstream 35969 16960708 ~ 16969331 (-)
ttc8 ttc8 coding downstream 92893 16901883 ~ 16912407 (-)
fam98b LOC107698618,LOC107568575,LOC107749537 coding upstream 15141 17029621 ~ 17034402 (-)
spred1 LOC107724258,LOC107677686,LOC107749536,LOC107698617,LOC107573584 coding upstream 21589 17036069 ~ 17054298 (-)
cdin1 zgc:154061,LOC107665555,LOC107724250,LOC107678147,LOC107554791,LOC107568570 coding upstream 201569 17216049 ~ 17276543 (-)
angel1 angel1 coding upstream 451390 17465870 ~ 17505049 (-)
LOC122362317 LOC107588350 coding upstream 508494 17522974 ~ 17528811 (-)
G121609 NA non-coding downstream 111902 16817606 ~ 16893398 (-)
G121644 NA non-coding downstream 455116 16549255 ~ 16550184 (-)
G121639 NA non-coding downstream 521331 16482647 ~ 16483969 (-)
G121509 NA non-coding downstream 670861 16334043 ~ 16334439 (-)
G121507 NA non-coding downstream 718897 16286122 ~ 16286403 (-)
G121715 NA non-coding upstream 118038 17132518 ~ 17132726 (-)
G121711 meis2,meis2a,LOC107698619 non-coding upstream 122390 17136870 ~ 17149028 (-)
G121717 meis2,LOC107724236 non-coding upstream 136032 17150512 ~ 17157229 (-)
G121721 NA non-coding upstream 153743 17168223 ~ 17210260 (-)
G121734 NA non-coding upstream 200575 17215055 ~ 17215278 (-)
LOC122362005 crim1,LOC107582940,LOC107679775,LOC107662656 other downstream 1053862 15829484 ~ 15951438 (-)
LOC122362003 LOC107664362,LOC107560152,LOC107752022,LOC107658150 other downstream 1238285 15760343 ~ 15767015 (-)
G121456 LOC107660450 other downstream 1264814 15738262 ~ 15740486 (-)
G121438 LOC107708961,LOC107664629,LOC107654010,LOC107719547 other downstream 1315506 15688891 ~ 15689794 (-)
LOC122361708 LOC107598628,LOC107708961,LOC107654010,LOC107719547,LOC107664629,LOC107557341 other downstream 1316860 15683661 ~ 15688440 (-)
acyp1 acyp1 other upstream 947809 17962289 ~ 17963981 (-)
LOC122361562 otofb,LOC107752720,LOC107701524,LOC107723281,LOC108423539 other upstream 967571 17982051 ~ 18004214 (-)
LOC122361613 NA other upstream 1264978 18279458 ~ 18281572 (-)
LOC122361943 NA other upstream 1616777 18631257 ~ 18644992 (-)
G122247 NA other upstream 1772402 18786882 ~ 18790880 (-)

Expression


Co-expression Network