LOC122361746 (vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939)


Basic Information

Item Value
gene id LOC122361746
gene name vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 18921965 ~ 18938637 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262686.1
GCTCGCGCAGTCACGTGGTCGTCACGGCTCCAGGAAGTTCCCTCAGCTCAGATAGCTCTCTGCTAGCTGTCAAACACCGAATCAGCTCAGGACAACCGACAGCAAAAGCCGAAACTTACCACATTATCGCGCGGGACAATGGGatgaaatacatttgtaatttgaGCGTCGAGCGTCTGTGTTTCAGCGAGATGAAAGGGCAAAACGCGAAGGCTACATGCTAGCCAACTGCTCATGACACAATAACAAAACAAGTTTTTCGTTTATTTTTGGACTCAAGAGGGATGGAGCGGGACGGTTCGAGCTCGCTAGTGATCTTTATAACTGTCAAGTAACTGCGGTTTTGTTTCACTCTGTTTTGTTGACACCTGCCAGGAGGTCGTAAGTGTTTTTGTGTCCTATCTTAACGTTTGTTTACGTGTGCTTGGTCGCCATGCACGACGCGTACGAGCCCGTTCCTATCCTGGAGAAACTGCCCCTGCAGATCGACTGTCTGGCGGCCTGGGATGATTGGCTCCTTGTGGGGACCAAACCCGGTCATCTCCTTCTGTACAGGATCAAGAAAGATGCAGgTACTAACAGGTTTGAAGTTACGTTAGAGAAATCCAATAAGAACTTCTCAAAGAAGATTCAGCAGCTTTTTGTGGTGTCACAGTACAAGATTTTGGTTAGTTTGTTGGAAAATAACATCCACGTTCACGACCTGCTCACGTTCCAGCAGATAACTGTTGTTTCCAAAGCCAAAGGAGCCACACTGTTTGCCTGTGACCTGCAGcAGTCTAGCTCAGGTGAAGCCAAGCTGCGCATGTGCGTCGCAGTCAAGAGGAAAATTCAGCTGTATTACTGGAAGGACAGGGAGTTCCACGAACTGCAGGGAGATGTTGCCGCTCCAGACATTCCCAAGTCCATGGCTTGGTGCGAGAACTCCATTTGCGTGGGTTTCAAACGAGACTACTATCTGATCCGGATGGACGGACGCGGCTCAGTCAAAGAGCTGTTCCCCACAGGGAAACAGCTGGAACCGTTGGTGGCCCCATTGGCTGATGGGAAGGTCGCAGTGGGTCAGGATGACCTCACGGTTGTTTTGAACGAAGAAGGCGTCTGCACTCAGAAATGCGCCCTTAACTGGACGGACATTCCCGTCGCCATGGAGCACCAGCCGCCGTACATCATCGCAGTGCTACCTCGCTATGTGGAGATCCGCACCCTTGAGCCCAGACTTCTGGTGCAGAGCGTAGAGCTGCAGAGACCTCGGTTCATCACCTCCGCTGGATCCAATGTTGTGTATGTCGCTAGCAATCACTTTGTGTGGCGTCTGGTGCCCATCTCTATAGCCAGCCAGATACGACAGCTGCTGCAGGACAAACAGTTTGAACTGGCGCTTCAGCTGGCGAAAATGAAGGATGATGCAGATGCAGACAAGAGACAACAGATCCATCACATTCAGAACCTGTTTGCCTTCAACTTGTTCTGTCAGAAACGCTTTGATGACTCCATGCAGGTGTTTGCTAAGCTAGGCACAGACCCCACTCATGTTATCGGACTGTATCCAGACCTGCTCCCCTCTGACTACCGCAAACAGCTGCACTACCCGAACCCTCTGCCCTCTCTGTCTGGAGCCGAGCTGGAGAAAGCCCACCTGGCCCTCATAGACTACCTGACACAGAAACGCAGTCATTTAGTGAAGCAGCTGAACGACACGGACCCCTTCACCACCTCCCCTCTCATGGAAGGGACCCCCACCATCAAGAGCCGCAAAAAGCTCCTTCAGATCATCGACACCACTCTGCTTAAATGTTACCTCCACACCAATGTAGCCTTAGTATCGCCTCTTCTGCGGCTGGAGAACAACCACTGTCACATAGAGGAGAGCGAGTATGTGCTGAAGAAAGCCCACAAGTACAGCGAACTCATCATCCTCTATGAAAAAGGCCTTCATCAGAAAGCTCTGCAGGTTCTGCTGGATCAGTCCACTAAAGCCAATTCTCCTCTGAAGGGCCATGAGAGGACTGTACAGTATCTTCAGAGACTGGGTGTGGAGAACCTGGGCATCATATTTGAGTTTTCACCGTGGGTTCTGAAGATTTGTCCAGAAGATGGACTGAAGATCTTCACTGAGGACCTTACGGAGGTGGAGACTCTTCCCAGGGATAAGGTGTTGAACTTGAAAGAAGGCTTCAAAGAGCTGGCCATCCCATACCTGGAGCACATCATTCACCTGTGGGACGAGACTCGGCCCGAGTTCCACAATGTTCTGATCCAGCTCTACCTGGAGAAGGTGCAAGGCCTCATGAAAGTGTATCTCAACTCACTGCCTGAAGGTGTTCCAGCTGTAGCTGCAGGAAAGGAGGAGGGAGAGCTGGGAGAGTACAGGAACAAGCTTGTGTTGTTTCTGGAAGTGTCCAGCTGCTACGAGCCCGAGCGACTCATCAGTGATTTCCCATTTGATGGTCTGTTGGAGGAGAGGGCTCTTCTTCTGGGTCATGGGAAACATGAGCAGGCTCTCTTCATCTACGTTCACATTCTCAAAGACACGCGTATGGCTGAAGAGTACTGTCACGGTCATTATGATCCATCAACAAACGGCAATAAAGATGTGTATCTGTCCCTGCTGCGCATGTATCTGTCTCCTCCGGACGTGCACTTCCTCGGGCCCATTAAGATGGAGCTATGTGAGCCACAGGCAAACCTCCAGGCGGCCCTGAATGTCCTTCAGCTTCACCACAGCAAACTGAACACCACCAAAGCCATAAACCTGCTGCCAGCCAACACGCAGATCCGAGAGATCCAGGTCTTTCTGGAGAGCGTGCTGGAGGAGAAGGCTGGGAGGAAGCGCTTTGACCAGGTCCTGAAGAGCCTCCTACAGGCCGAGTTCCTTCGGTGCGTGCAGGAGGAGCGTATCTTTCACCAGCAGGTGAAGTGTGTCGTCACAGACGAGAAAACCTGCAGGGTGTGCAAGAAGAAGATTGGAAACAGTGCCTTTGCCAGGTATCCTAACGGCGTTGTGGTTCACTACTTCTGCTGTAAAGATCGCAGCGTGTGTCCAGCGGAGTAGTCAAGGCTGCAGACCGGAGACTCTGGAA

Function

symbol description
vps39 Acts upstream of or within developmental pigmentation; eye development; and vesicle-mediated transport. Predicted to be active in cytoplasm and membrane. Is expressed in brain; digestive system; head; and integument. Orthologous to human VPS39 (VPS39 subunit of HOPS complex).

NR:

description
PREDICTED: vam6/Vps39-like protein isoform X1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0048066 developmental pigmentation biological_process
GO:0001654 eye development biological_process

KEGG:

id description
K20183 VPS39, VAM6; Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262686.1 True 3083 mRNA 0.52 29 18921965 18938637

Neighbor

gene id symbol gene type direction distance location
LOC122361744 galnt16,LOC107707671,LOC107687852 coding downstream 4475 18887551 ~ 18917490 (-)
LOC122362022 NA coding downstream 57523 18860972 ~ 18864442 (-)
LOC122362021 NA coding downstream 82725 18837814 ~ 18839240 (-)
LOC122362202 galnt16,LOC107707671,LOC107687852 coding downstream 106862 18794589 ~ 18815103 (-)
numb numb,LOC107687942,LOC107753345 coding downstream 195137 18686027 ~ 18726828 (-)
LOC122362028 NA coding upstream 40069 18978706 ~ 18981367 (-)
LOC122361743 NA coding upstream 42864 18981501 ~ 18992880 (-)
nkx2.4a nkx2.4a,nkx2-4,LOC107707661,LOC107688185,LOC107558479,LOC107737279 coding upstream 488076 19426713 ~ 19429509 (-)
nkx2.2a nkx2.2a,nkx2-2,LOC107558480,LOC107707659,LOC107737280,LOC108435751 coding upstream 526371 19465008 ~ 19469172 (-)
foxa2 foxa2,LOC107656870,LOC107558496 coding upstream 655302 19593939 ~ 19596388 (-)
G122246 NA non-coding downstream 221710 18698844 ~ 18700255 (-)
G122245 NA non-coding downstream 223138 18696502 ~ 18698827 (-)
G122240 LOC107753347,LOC107687945,LOC107558486,LOC107687860,LOC107758716 non-coding downstream 248024 18669928 ~ 18673941 (-)
G122241 NA non-coding downstream 253954 18667372 ~ 18668011 (-)
LOC122361655 odc1,LOC107687839,LOC107687948,LOC107753348,LOC107758719,LOC107558486,LOC107687945,LOC107753347,LOC107758716,LOC107687860 non-coding downstream 254843 18650479 ~ 18667122 (-)
LOC122361748 NA non-coding upstream 76960 19015597 ~ 19020095 (-)
G122270 NA non-coding upstream 82360 19020997 ~ 19022185 (-)
G122274 NA non-coding upstream 88143 19026780 ~ 19066968 (-)
G122334 NA non-coding upstream 199889 19138526 ~ 19138826 (-)
G122343 insm1,insm1b,LOC107558475,LOC107564444,LOC107756196 non-coding upstream 228744 19167381 ~ 19169489 (-)
LOC122362226 vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939,LOC107758712 other downstream 85345 18819663 ~ 18836620 (-)
G122247 NA other downstream 131085 18786882 ~ 18790880 (-)
LOC122361943 NA other downstream 276973 18631257 ~ 18644992 (-)
LOC122361613 NA other downstream 640393 18279458 ~ 18281572 (-)
LOC122361562 otofb,LOC107752720,LOC107701524,LOC107723281,LOC108423539 other downstream 917751 17982051 ~ 18004214 (-)
ralgapa2 ralgapa2,LOC107687934 other upstream 208694 19147331 ~ 19282456 (-)
LOC122362030 cldn20,tfb1m,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299,LOC108269830,LOC107680107,LOC107728964,LOC107675319 other upstream 885822 19824459 ~ 20053139 (-)
LOC122362234 kif26a,kif26ab,LOC107739214,LOC107662598,LOC107732702,LOC107559913,LOC107586892 other upstream 1618086 20556723 ~ 20636159 (-)
aspg aspg,LOC107586863,LOC107739215,LOC107732472,LOC107662599 other upstream 1819079 20757716 ~ 20770229 (-)
nenf nenf,LOC107739254,LOC107664444,LOC107732830,LOC107662615,LOC107586886 other upstream 1976564 20915201 ~ 20916639 (-)

Expression


Co-expression Network