LOC122361798 (ift43,LOC107723274)


Basic Information

Item Value
gene id LOC122361798
gene name ift43,LOC107723274
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 17792213 ~ 17808157 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262799.1
tgtatttaaattgcTATACTCTGCTAATATGATCTTGAGTTTTAGAAAAAATGAtgagcaaagaaagaaagaaattgtaTGTCTATGACAAGTCCTAAAACTTAACCACTGAACACCAAGTAGGCTAAAGAAAGGATGAACAATAAAGATGAGTTTgcattatttcttaatattcCCATATTTCATATCTCtctttcatatatatttcatatagcCTATAAGAAGGACGAACACGCATCAAATCCTGGGCAACTTTACATGTAGATCAAATAGGCTACATAAGAACgcaaaaaagaagaaacccCCCctcaaaaaaatagtttttgcttgaaaatcGCGCATTTGTGTCCAACGATGGAGACGTGACGAAGCTCGGGGGCGACGTGACGTCACTTCCGGGACGCGGCTCCGTTAGAAATGGACGACGGTCTTCAGCTGGCGGACGGCGGATTCGCTAAAAATGTTGCCAGATCAGGCAGAAGAGCTCGCCAGGCAGCCGAGATGATGAGCGCTGAAGACTCTCGTCAGAGGAGATCATCTTCATCAGTCAGTAACTCAGCAGAGggACCTCCACCGAAGCCGGCCCGTCGGCAGGGAGGATGGGCGGAGGAGAGCTCCGGAACCGGTTCTGCCAAGTCTGGACGCCGGCCGGCCGCTGAAGAGCTGGAGGACCGGCGACTGAGGCCACAAACCCCCGAGGGCTCTGACAATGAAAGTGACATCCCAGTGATTCCAGACCTGGAGGAGGTTCAGGAGGAAGACCTCACCATGCAGATCGCCGCTCCACCCAGTATCCAGGTGAACAGAGTTATGACCTACAGAGACCTGGACAACGACCTTATGAAGTACTCAGCCTTTCAGACCCTGGATGAAGAGATTGACCTGAAACTGCTCACGAAGGTTTTAGCCCCGGAGCAGGAGGTGAGAGAGGAGGACGTGGGCTGGGATTGGGATCATCTGTTCACCGAGGTCTCCTCTGAACTCCAGACGGAATGGGATCAAGGAGAGCGGGAAGATCAGTCTCCACTTCCTGTGGCCTGAGGATGGATTTACACGTCGCGTGTTCAGATAGGAAAATATTGTTCACATTGAATGTGTCTCTTGACGATGGCGGTGCGTCGTCGCTTACTCTCTGTGTTTGTCGTGAAGGTTAACCTTGCAAACCCAGAAACATTGCTTTTCTTAACTGGATCAATCGGGAGACATTTGTCACCGCTTGTAGTATCTGGAAAAGGCTCAAATCCAAGGTTAATGAGCGGGAAAACTAAAATCCAGTTGATTGAGTTAAAATGAACTTTGCACATCCGAGCAAGCCGGCCTTATCGTTATTGACCACACCATCGACCATCCGAGCTCGTCCTGTTCTCACGAGCGTCTTTCCTGCGTTTCTGTCACACCGTGTGGATCAACACAATAACATGCTTCATTTCAGACAGAACATCAAATATATGCATTCGAATGTCACTATTAGaaaaatgtacgtttttatAATCATTAGTATATATCTTGTGTAtcgtgtatttgtttttaaatggctTAAAGGTTAAAAGAGGATCTATCATTatgattgaaaataaaaacaattaaaagta

Function

symbol description
ift43 Involved in cilium assembly and intraciliary retrograde transport. Located in centriolar satellite and cilium. Part of intraciliary transport particle A. Implicated in cranioectodermal dysplasia 3; retinitis pigmentosa 81; and short-rib thoracic dysplasia 18 with polydactyly.

NR:

description
intraflagellar transport protein 43 homolog

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0035721 intraciliary retrograde transport biological_process

KEGG:

id description
K19675 IFT43; intraflagellar transport protein 43

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262799.1 True 1592 mRNA 0.46 9 17792213 17808157

Neighbor

gene id symbol gene type direction distance location
esrrb esrrb,LOC107678144 coding downstream 101398 17637590 ~ 17690815 (-)
dlst dlst,LOC107702243,LOC107724251,LOC107749530,LOC107678142 coding downstream 233050 17543830 ~ 17559163 (-)
LOC122362317 LOC107588350 coding downstream 263402 17522974 ~ 17528811 (-)
angel1 angel1 coding downstream 287164 17465870 ~ 17505049 (-)
cdin1 zgc:154061,LOC107665555,LOC107724250,LOC107678147,LOC107554791,LOC107568570 coding downstream 515670 17216049 ~ 17276543 (-)
ttll5 ttll5 coding upstream 25165 17833322 ~ 17911030 (-)
flvcr2a flvcr2,flvcr2a,LOC107702238,LOC107589770,LOC106591116 coding upstream 108045 17916202 ~ 17936224 (-)
jdp2a jdp2,jdp2a,LOC107701522,LOC107589793,LOC107702236 coding upstream 131584 17939741 ~ 17949238 (-)
fosaa fosaa,fos,LOC107723273,LOC107702235,LOC108423428,LOC107735358 coding upstream 143891 17952048 ~ 17958595 (-)
LOC122361452 gjd2,LOC107752716,LOC107565221,LOC107687856 coding upstream 462714 18270871 ~ 18276126 (-)
G121854 NA non-coding downstream 171542 17620220 ~ 17620671 (-)
G121799 NA non-coding downstream 189914 17353412 ~ 17602299 (-)
G121852 NA non-coding downstream 208624 17582903 ~ 17583589 (-)
G121734 NA non-coding downstream 576935 17215055 ~ 17215278 (-)
G121721 NA non-coding downstream 581953 17168223 ~ 17210260 (-)
G121965 NA non-coding upstream 197117 18005274 ~ 18005603 (-)
G121980 NA non-coding upstream 262705 18070862 ~ 18132726 (-)
G122002 fermt2,LOC107565223,LOC107589764 non-coding upstream 328182 18136339 ~ 18148376 (-)
G121987 NA non-coding upstream 358600 18166757 ~ 18171026 (-)
G121986 NA non-coding upstream 365560 18173717 ~ 18212416 (-)
LOC122362005 crim1,LOC107582940,LOC107679775,LOC107662656 other downstream 1840775 15829484 ~ 15951438 (-)
LOC122362003 LOC107664362,LOC107560152,LOC107752022,LOC107658150 other downstream 2025198 15760343 ~ 15767015 (-)
G121456 LOC107660450 other downstream 2051727 15738262 ~ 15740486 (-)
G121438 LOC107708961,LOC107664629,LOC107654010,LOC107719547 other downstream 2102419 15688891 ~ 15689794 (-)
LOC122361708 LOC107598628,LOC107708961,LOC107654010,LOC107719547,LOC107664629,LOC107557341 other downstream 2103773 15683661 ~ 15688440 (-)
acyp1 acyp1 other upstream 154132 17962289 ~ 17963981 (-)
LOC122361562 otofb,LOC107752720,LOC107701524,LOC107723281,LOC108423539 other upstream 173894 17982051 ~ 18004214 (-)
LOC122361613 NA other upstream 471301 18279458 ~ 18281572 (-)
LOC122361943 NA other upstream 823100 18631257 ~ 18644992 (-)
G122247 NA other upstream 978725 18786882 ~ 18790880 (-)

Expression


Co-expression Network