zfp36l1a (zfp36l1a,LOC107752727,LOC107577075,LOC107679798,LOC107666263,LOC107600858,LOC107741857)


Basic Information

Item Value
gene id zfp36l1a
gene name zfp36l1a,LOC107752727,LOC107577075,LOC107679798,LOC107666263,LOC107600858,LOC107741857
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 15212872 ~ 15218170 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262852.1
AGACCAAGGAGGTTTCTTACAGGGCAGCACAAGTTTACACAACCAGAACCTAGcttgttacaatttaaagtatCCGATTCTTCTCGCCGCGTTTGATTTATGCTCGATTGGAAGATGACCACAGCCGTGGTGTCGCCTTTCTTCGACTTCAGCGAAGTGATCAACAACAAGaaCAAAATGCTgaactacaataataatatccTCAGTACTCCACACCCTGTCTCGGTCCCCTGCACAGGGGCAAGTCTGCCCATCTCCAACCCCACCGGGTGCCTGCTGGACAGGAAGGCTGTGGGGACGCCCTCAACTGGTGGGGTTTACCAGCGCCGGCACTCTGTCACTTTGGCTAGCACCAAACTCAACCAAAACCAGTTCTTGAACATTGCCAAGGCAGATCCATCCCTGCTCGGTTCAGGGACGGGAACCACCGGCAGCAGCAACAAAGAGAACCGACTTCGGGACCGCTCTTTCTCGGAGACGGGGGATCGCCTGCTACAGAAGTGTTCGGGCCCTGGAGGCCCCAACAGCCAGGTCAACTCGAGCCGCTACAAGACAGAGCTATGCAGGCCTTTCGAGGAGAACGGCGCCTGCAAGTACGGTGACAAGTGCCAGTTTGCCCATGGCATTCATGAGCTGCGCAGCCTAAGCCGCCATCCTAAATACAAGACAGAGCTCTGCCGCACATTCCACACCATCGGCTTCTGCCCCTACGGTCCACGCTGCCACTTCATCCACAACGCAGAAGAGCGCCGCGGACCTCCTCCGACCCCATCGCCGCTTTCATCCTCCAATAAGATGGAGAGGCCTCGGCTGCAACACAGCTACAGCTTTGCAGGGTTCCCCAGCTCTGAAGGCTTGAGGGAAAGCCCTACCTCGGTCACTCCTCCACCTATATTTTCCCCGGACGAACTGCTCGAGTGGCCTAGCAGCAACCCCTTTACGTATTCCAGCCAGGAGCTGGCCAACCTCTTCAGCCCCGGCCTGGGCAACGCACCTTTATCCTGCTCCGACCCTTCCACCCAGGCTCCGTCTTCCCCGACGACCCCGTACTACTTCAGGGCCATGTCAGAGTCTCCCCAACTTCACGAGTCTCCATCCAGTCAGCTAGATTCCGACCAAGAGGGCTACCAGAGCAGCGCGGGCGGAAGTCTGAGCGGCTCCGAATCTCCCGTCCTCGACACCACCCGCCGACTGCCTATCTTCAGCAGGCTTTCCATCTCTGACGACTAGAGCACACTGAGCCAGACCCCATCCCCCTTTCCACTGCACGCAGCAGTCTTGGGCAGAGAGGATGAGACGCTAGCACTCCCTCTACCTCTCGCCATTTCTCCGGCGCCCTAGAAGCCGTAGACTTCCCTCCTTGTATGAAGTCCGCTCTGAAAACCGATGCAGTGAATTAAGGGATCTTTCTCGTTTTGAATACTCTTTTTAGCCAGAACAAGCTAAAACTCTCCCAGCCTCAAGACCCTTCTGTTTTCCGGGCCTCGGCTTGCAGAGGCCTCTGCTATGTTCTTGGTGTGACTGTGCCAAACACGCAGAGTAGGAAGTGGATTAGCGAAATGCTAATCGTGAGAGGTATGAGACCGTTGTGCCAGGTGCCACAGCTGCAGTCAAGTGTAGCGGAGCCAGTGGCACGGTTATGGGAGAGATCTGCGCCCTTCCCCCTCCTCACAAATTACCACTCTTCTCAAGGACACTCTTTCATAACTAACTAAAGCTCACAAGTGTCATGCTTAGACTTTTCACAACTGTCTTTGTAGACCTGCTTAAagcaaaaagaggaaaagaacatgaaaaaaaaagacaagtgcCTGGGGTTAAGTGTTGGGGTGAATGGACCACtgtttcttttatcttttaatatatatatatatttttttttgtggcctAATTATGTAGCTCTTGTTTTGAGTGTGTGCTCTCCCTACCTTGAAATTGCAGATTACACCAGTCTGCAGGAAGGACTTCTCTCGTAAGGGTTGAATGAGAATGGAGCTCTGGAATATTTCAGGCACATTCAAATGTTCAATCAGGTGCTACATGCTCCATGCCTCCTCTCCAGCCAGCACAAACCCTGAGATGGGACGACTCcactcaaaaaaatgaacaattccttacaatttttgttattgttgttgttagtgCCCTTTTTCCCATTAGTTGCTGGTTACTTCAAGTTTGTTGGGAAGGGAATCTTGTTGTTATTAGAccttaaaaacaaacttttctgTCCCACCTCAAAAGCCAACTTCCCTCCGGCCAATCAGCAGACAGAGGGAGATTTCCATCATTCCCAAGGTGCAGTTCAACCTCCTACAGCTTCACTTTAGTTCTTCATGCAAGCACGCTTTTTTCCGTAGATTCTGCTCAGAGGAGCACTTTGTAATTTTGTCATCTTTCCACCTCTaagttttgatttttattatggtcattgtttattattattattattattattattatggttatattattgttattgtttgaaAACCTTTCAGAACAGAAGGGTTTGCTTGTCACTGCTTATTTAACttatcaaaaacatatttattggtgatcatatgcatttttttgttaattttgtttgtatttatcttGATAATGAAACGatagaatatattttcttttatgttaaattatgaTCTTCTGTATTAATCTTAAGATTGTGAAGACTTGTcggctttctttttttcacagtttaatATATTGTACTACAATGACTTTTGTTGGCAACTACACTTAAATGAAActtaatttaaagcaaaaacaaaaaaaatcctctgcattctgatttatttattgtagatTTATTGTCATTCCCTTTTTCCCAGATATTTGACTGCAAAATCAGTACTACCATACAATCATTCCTAGATTATAAACTCACAGGAGTGTcggcttttttttgttgtttgtttgtttgaggtGAGCTTAGGCCCCACTTGTAGCAATTTATATGGcagttaaaaatctttttttttttttttttttttttttttttttttttaacagtgaatCAAACCGTGaatttttgttgtgaaaacaGACTTGGATTACCAATCCATTAACTGAATGCCTGAGCCTGATGATAGATTTGATCTATGGAACAAATGATCAACTTGTCAAAGTATCAAGTTGATCCAAGATGCAGAAGTTTAGTGGCCTTAACACATGCACCACATTATAAATACCATCatgaagtgcttttttttttttttttttttttttttgaatgttcgTTACAAAGGTTTAATGATGTTGCAAGTAATAAACCTCCAGTGTTAAAGCAATTTATTTGGTTTATGGTGGTGGACATGAAAGGCAGGCAGTAATTGTGACCTACTGGGTTGAAGTTCTGTTGTCCTTGGACATTTGGAGCTTTTGGCTTCTATGTAAAGTGCCTCTTTTACACATTCCATGAGCAAGCTTCTTTgccttaaataaaactttttttatgacTTATTGCTTGTATCCTCAGTGGTTTAAGCAATGATTGTCCAAGTTGGTTAACAGTATAGACACAAAGAAAGTATCTGAAgagttgaatgtatttttttttttttttcatataaacagCTATTGTTGTTCACTACAGTAATTTCTATGAGTTTATATAAGATTGATCTCTCTTTTGTAATGACTGATTGCagttaaaaccaataaaatcccatatttttgagaaaataaa

Function

symbol description
zfp36l1a Predicted to enable metal ion binding activity. Predicted to be located in cytoplasm. Is expressed in several structures, including anterior neural keel; immature eye; nervous system; splanchnocranium; and tail bud. Orthologous to human ZFP36L1 (ZFP36 ring finger protein like 1).

NR:

description
mRNA decay activator protein ZFP36L1-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K18753 ZFP36L; butyrate response factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262852.1 True 3688 mRNA 0.44 2 15212872 15218170

Neighbor

gene id symbol gene type direction distance location
kif3cb kif3cb,LOC107594701,LOC107679774,LOC107752740,LOC107741850,LOC107600866,LOC107666256 coding downstream 218357 14989660 ~ 14994515 (-)
asxl2 asxl2,LOC107679772,LOC107666255 coding downstream 224938 14970900 ~ 14987934 (-)
dtnbb LOC107600868,LOC107741848,LOC108425647 coding downstream 243645 14927166 ~ 14969227 (-)
dnmt3ab LOC107679796,LOC107752744,LOC107600869 coding downstream 288379 14881454 ~ 14924493 (-)
dpysl5a dpysl5a,dpysl5,LOC107741845,LOC107666251,LOC107752745,LOC107679787,LOC107594693 coding downstream 336348 14861336 ~ 14876524 (-)
rps6ka5 rps6ka5,LOC107582903,LOC107730213,LOC107741860,LOC107679795,LOC107600856,LOC107666260 coding upstream 264941 15483111 ~ 15505931 (-)
LOC122361840 c17h14orf159,LOC107730207,LOC107679776 coding upstream 631295 15849465 ~ 15858684 (-)
slc24a4a slc24a4a,LOC107679778,LOC107730209,LOC107662654,LOC107602265,LOC107582941 coding upstream 640554 15858724 ~ 15890289 (-)
LOC122362058 crim1,LOC107679775,LOC107662656,LOC107582940 coding upstream 734412 15952582 ~ 16000711 (-)
LOC122362009 crim1,LOC107679775,LOC107662656,LOC106611167 coding upstream 899952 16118122 ~ 16207614 (-)
LOC122361632 NA non-coding downstream 2328 15201696 ~ 15210544 (-)
G121214 NA non-coding downstream 167506 15039723 ~ 15045366 (-)
G121123 NA non-coding downstream 420804 14790929 ~ 14792068 (-)
G121096 LOC107752749,LOC107594711,LOC107666252 non-coding downstream 435763 14776886 ~ 14777109 (-)
LOC122361512 NA non-coding downstream 632004 14462125 ~ 14580868 (-)
G121269 NA non-coding upstream 55913 15274083 ~ 15274615 (-)
G121301 NA non-coding upstream 94395 15312565 ~ 15313252 (-)
G121320 NA non-coding upstream 176835 15395005 ~ 15395362 (-)
G121321 NA non-coding upstream 177727 15395897 ~ 15396108 (-)
G121323 NA non-coding upstream 192872 15411042 ~ 15411260 (-)
crip2 crip2,LOC107594708,LOC107752734,LOC107679813,LOC107666262,LOC107741856,LOC107600859 other downstream 112915 15083818 ~ 15099957 (-)
crip1 crip1,LOC106611282,LOC107679815,LOC107594706,LOC107600860 other downstream 148194 15059993 ~ 15064678 (-)
ptgr2 ptgr2 other downstream 186457 15010826 ~ 15026415 (-)
myo6b myo6b,LOC107741840,LOC107594692,LOC107679792,LOC107600844,LOC107666253 other downstream 373059 14792186 ~ 14839813 (-)
LOC122361652 LOC107679745,LOC107752800,LOC107594718 other downstream 479295 14709491 ~ 14733577 (-)
pax9 pax9,LOC107679748,LOC107666242,LOC107741874 other upstream 179618 15397788 ~ 15406503 (-)
LOC122361708 LOC107598628,LOC107708961,LOC107654010,LOC107719547,LOC107664629,LOC107557341 other upstream 465491 15683661 ~ 15688440 (-)
G121438 LOC107708961,LOC107664629,LOC107654010,LOC107719547 other upstream 470721 15688891 ~ 15689794 (-)
G121456 LOC107660450 other upstream 520092 15738262 ~ 15740486 (-)
LOC122362003 LOC107664362,LOC107560152,LOC107752022,LOC107658150 other upstream 542173 15760343 ~ 15767015 (-)

Expression


Co-expression Network