smyd2a (smyd2a,LOC107592771,LOC107752785,LOC107697773,LOC107733184,LOC107594786,LOC107674111)


Basic Information

Item Value
gene id smyd2a
gene name smyd2a,LOC107592771,LOC107752785,LOC107697773,LOC107733184,LOC107594786,LOC107674111
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 12977069 ~ 12987892 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262896.1
GCTCGGCGTTTAGAGCCGTTTCGCCGAACATGTGGTGTGGCAGTGGCGTCACTACACTTGCCGCAGTCGCTAACGGAACCGACTGAGACCGAGACAGCGCTTTCGGACGAGCACGAGGAAGCGCGACACGCGAGCAGCAGGTCAAGAGCGATGAAAACCGAAGGAATCGAGGGCGCCGAAAGGTTTCTGAGCCCCGGGAAAGGCCGGGGACTCAAAGCCACAAAGCATTTCAAAGTTGGCGATCTAGTGTTCGCCTGTCCGGCGTACTCTTACGTGCTGACCGTGAACGAGAGAGGCGGACACTGCGAATGCTGCTTTACCAGGAGAGAAGGGCTGTCGAAGTGTGGAAAATGTAAACAGGCCTTTTATTGCAATGTAGAGTGTCAGAGAGGAGACTGGCCCATGCACAAGCTGGAGTGCTCGGCCATGTGCGCGTATGGAGAAAACTGGTGTCCATCAGAAACAGTGCGACTGGTCGCCAGAATAATTCTGAAACAGaaGTGCCAAACAGAAAGGACTCCTTCAGAAAGAGTGTTGACTCTTAGAGAATTGGAAGCACATCTGGACAAGCTAGATAATGAGAAGAATGAGATGAATGATACAGACATTGCTGCGCTGCACCACTTTTACTCCCGACATCTTGATTTCCCTGATAATGCAGCACTTACTGAACTCTTCGCTCAGGTGAATTGTAATGGCTTCACCATTGAAGACGAGGAGCTGTCTCATTTGGGTTCTGCTGTATTTCCAGACGTTGCTCTGATGAACCACAGCTGTAGCCCAAATGTGATTGTGACCTATAAAGGTACAGTCGCGGAGGTGAGAGCTGTGCAGGACATCAGCCCCGAAGAAGAGATCTTCAACAGTTATATTGACCTCCTGTATCCAACAGAGGATCGAATTGAACGGTTGAGAGATTCTTACTTCTTCACATGTGACTGTAAAGAATGCACCTCTCAATCAAAGGACAAGGCCAAAATGGAGATCCGACAGAAGCTTAGCACACCTCCGGAGGAAGAGGAAATCAAGCAGATGGTGATGTATGCCAGAAATGTCATTGAGGAGTTCAGAAGAGCAAAGCACTACAAAACCCCCAGTGAACTGCTGGAAATCTGTGAGCTAAGCTTGGAGAAAATGGGTTCTATCTTTGCCGAAACCAATGTATACATGTTGCACATGATGTATCAGGCAATGGGGGTCTGTCTCTATATGCAGGATTGGGATGGAGCAATGAAATATGGCGAGAAAATTATCCAGCCCTACAGTGTGCATTATCCTCCTTACTCACTGAATGTGGCTTCTATGTACCTGAAACTTGGAAGATTGTACCTAGGACTTGAGAAGAAGACACAAGGAGTTAAAGCTTTAAAGAAGGCTCTTGCAGTCATGGCCGTTGCCCACGGTAAAGACCACCCATACATCGCCGAGATTAAGAAGGAAATGGAAGAGCAGAAATAATGGGAACACATGGAGGAATATGCATCAAACGCTGGCATGTGTCTTATACCTCTCCcgagaatataaaaaaaagtgatgtcaAAATTGTCTGttcatctgaaatgtcatttaaatgagtttttggTTTGTAAATAGATGGCCTGAGTCTGAAATATTTTGTTGCTTGTATTGTCTGCACTTTTGAAAAAGTGTGCTGCACTGTTTTCTGTAAAGAAGGGCTAAGAATTAAGAATCAAGTATCATATCAATATATGCCAGGATTTAACCAATATTTTGCCCTCTCATGTAGCAACAATATTCTTTTCAATAGCTAACGaatgtaaatcatttatatattctcAATAAGGCGAAAGGCTCTGATCACCGACTCTGTTTTACTTGTCTGTTTGCATGGATATTGTTTTGCGCTCATCAAAATATATCATGGATACTGCTAAGATATTGGACTTCCTATCAGTCAGTGCATTTCATAGTGTTACTTTCATTAttgcttatttgtttgttaaacatttgttttagtaTTGTGCAATTTTGACAGGTAgcattggcaaaaaaaaaaagaaaaggaaatgtaaagaaaatatgCAGTCTGCCACATGCAAAATTTTAATGTGACACTAAAGTAATAAATTCCTTAGGACAAAAA

Function

symbol description
smyd2a Predicted to enable RNA polymerase II complex binding activity and histone methyltransferase activity (H3-K36 specific). Acts upstream of or within several processes, including caudal fin development; heart contraction; and regulation of sarcomere organization. Predicted to be located in cytosol. Predicted to be active in nucleus. Is expressed in heart primordium; muscle cell; and somite. Orthologous to human SMYD2 (SET and MYND domain containing 2).

NR:

description
PREDICTED: N-lysine methyltransferase SMYD2-A-like

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0010452 histone H3-K36 methylation biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0018026 peptidyl-lysine monomethylation biological_process
GO:0018027 peptidyl-lysine dimethylation biological_process
GO:0060297 regulation of sarcomere organization biological_process
GO:0043516 regulation of DNA damage response, signal transduction by p53 class mediator biological_process
GO:0060047 heart contraction biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0000993 RNA polymerase II complex binding molecular_function
GO:0046975 histone methyltransferase activity (H3-K36 specific) molecular_function

KEGG:

id description
K11426 SMYD; [histone H3]-lysine4/36 N-trimethyltransferase SMYD

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262896.1 True 2104 mRNA 0.43 12 12977069 12987892

Neighbor

gene id symbol gene type direction distance location
cenpf cenpf,LOC107592772 coding downstream 143 12962588 ~ 12976926 (-)
kcnk2a LOC107697693,LOC107752820,LOC107674044,LOC107733102,LOC107594834 coding downstream 24501 12933763 ~ 12952568 (-)
cgref1 LOC107697770 coding downstream 50003 12923396 ~ 12927066 (-)
xkr5b LOC107592805,LOC107752812 coding downstream 57963 12910571 ~ 12919106 (-)
grhl1 grhl1,LOC107752795,LOC107697767,LOC107592763,LOC107674126,LOC107733199,LOC107594788 coding downstream 131362 12827470 ~ 12845707 (-)
prox1a prox1a,LOC107752784,LOC107592773,LOC107697775,LOC107594785,LOC107733138,LOC107674077 coding upstream 15687 13003579 ~ 13039426 (-)
efr3ba efr3ba,LOC107697777,LOC107592778,LOC107752767,LOC107733134 coding upstream 218110 13206002 ~ 13227737 (-)
LOC122361854 ect2l,LOC107592784,LOC107752807 coding upstream 282465 13270357 ~ 13278671 (-)
ccdc28a ccdc28a,LOC107752777,LOC107697785,LOC107592783,LOC107733152,LOC107594775 coding upstream 290884 13278776 ~ 13283695 (-)
tmem121aa tmem121a,tmem121,LOC107594772,LOC107674105,LOC107592808,LOC107697696 coding upstream 330519 13318411 ~ 13345591 (-)
G120675 ywhaqb,LOC107733143,LOC107674035,LOC107697768,LOC107592764,LOC107752793 non-coding downstream 95731 12873851 ~ 12881338 (-)
G120674 NA non-coding downstream 121142 12853888 ~ 12855927 (-)
G120665 NA non-coding downstream 233479 12740435 ~ 12743590 (-)
LOC122361537 NA non-coding downstream 483636 12483626 ~ 12493433 (-)
G120588 NA non-coding downstream 538231 12434607 ~ 12438838 (-)
G120756 NA non-coding upstream 89909 13077801 ~ 13081340 (-)
G120762 NA non-coding upstream 103188 13091080 ~ 13091370 (-)
G120767 NA non-coding upstream 163116 13151008 ~ 13151338 (-)
G120843 NA non-coding upstream 186056 13173948 ~ 13174191 (-)
G120833 NA non-coding upstream 192182 13180074 ~ 13183449 (-)
G120660 LOC107752798,LOC107592762,LOC107697764,LOC107733171 other downstream 156401 12817192 ~ 12820668 (-)
LOC122361973 LOC107592804,LOC107697765,LOC107752799,LOC107674033,LOC107733077 other downstream 185200 12663239 ~ 12791869 (-)
lin52 lin52,LOC107594798 other downstream 585521 12381281 ~ 12391548 (-)
evla evla,LOC107719466,LOC107697733,LOC107563375,LOC107594809,LOC107733132,LOC108425620 other downstream 1032341 11915468 ~ 11944728 (-)
alkal2b fam150bb,fam150b,LOC107674025,LOC107733108,LOC108425626 other downstream 1172284 11800488 ~ 11804785 (-)
LOC122361883 LOC107592775,LOC107752809,LOC100537549,LOC108433935,LOC107733136,LOC107674087 other upstream 205285 13193177 ~ 13200692 (-)
kidins220a id2a,id2,kidins220,LOC107579075,LOC107707685,LOC107553286,LOC107655320,LOC107752760 other upstream 993655 13981547 ~ 14040211 (-)
LOC122361652 LOC107679745,LOC107752800,LOC107594718 other upstream 1721599 14709491 ~ 14733577 (-)
myo6b myo6b,LOC107741840,LOC107594692,LOC107679792,LOC107600844,LOC107666253 other upstream 1804294 14792186 ~ 14839813 (-)
ptgr2 ptgr2 other upstream 2022934 15010826 ~ 15026415 (-)

Expression


Co-expression Network