rsad2 (rsad2,LOC107752752,LOC107553276,LOC107707684,LOC107655310)


Basic Information

Item Value
gene id rsad2
gene name rsad2,LOC107752752,LOC107553276,LOC107707684,LOC107655310
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 14206780 ~ 14209877 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262946.1
TTTATCTGACTAAGCAGACAGCATTCTGTTTATCTTTCGTTTTCCAGTCCTCCAGAGCGAGAACAGAAACTTATGAGAAGAGCAAGCTGACACGGCGCCGTATAAATAGGGAGGTGTTGCCTCCCCGCGTCTTAGTTTCTAAGCGCCTTCATCATGTTAGCGTCAAACCAAGTTGATTTTGCGGCGATGTCGATGCAATTTTGCCTGAAGAGCGTCCGCGTCTTTCTGGCAGCCCTGCTGAGGTGGATGTGCGCGCTGGTGTCTGGCGCCCCCGCGGGAAGGACCGGGCCCCCGGAGACTCGCGCCGAAGGGCAGCAGACCACCCCGAGCAGCGTGAACTACCACTTCACCCGCCAGTGCAACTACAAGTGCGGGTTTTGCTTCCACACCGCAAAGACCTCTTTCGTGCTGCCTACCGAGGAGGCGAAGCGAGGCTTGCGACTTCTGAAAGAAGCAGGAATGGAAAAAGTCAACTTTTCGGGTGGGGAGCCCTTTCTTCACGAGAGGGGCCGTTTTCTGGGAGAGCTCGTGCGGTTCTGCAAGCAGGAGCTGCGGCTGCCGAGCGTCAGCGTCGTTAGCAACGGAAGCCTGATCAGAGAAAGCTGGTTCCAGAGATACGGTGACTACCTGGACATCCTGGCAGTGTCTTGTGACAGTTTTAACGAAGACACGAACAAAGTCATAGGCCGAGGTGAGGGCAGAAAGAGTCACCTGGACAAACTGCATCTAGTTCGTAACTGGTGCCGAGACTATAAGGTGGCTTTCAAAATCAACTCGGTTATCAACACCTACAACGTGGATGAAGACATGGCGGAGCAGATCACTGACCTGAACCCCGTGCGCTGGAAGGTCTTCCAGTGTCTGCTGATAGAAGGTGAAAACGCTGGGGAGAACAGCCTCCGAGAGGCAGAGAAGTTCGTCATCAGCGATCGGCAGTTCCAAGACTTCCTGGATCGCCACCAGAGCGTTAAGTGTCTGGTTCCAGAGTCTAATCAAAAGatgAGAGACTCTTACCTGATTCTTGATGAATACATGCGCTTCTTGGATTGCAGAGGGGGGAGAAAGGATCCGTCGAAGTCCATTCTGGACGTTGGTGTGGAAGAGGCCATCAAGTTTAGTGGCTTTGACGAGAAGATGTTCCTCGTGAGAGGAGGGAAGTATGTGTGGAGCAAAGCGGATATGAAACTGGACTGGTGAACCGTTTTGAcattgtggggttttttttttgctttgtgtttaCATTGAGAGCTGAGTTATATGGTGATAAGCAGTTGTATGATATAGTTACAAAAGTTACAACGGCTTCAAAAGCTGTTTTcactatttcatttttttttagattctaTTGCACTGaattacttaaatataattataaatataattgtactttttatgtatttgtatatagatagacagacagacagatagtaAGGTAGATAtacagatgg

Function

symbol description
rsad2 Predicted to enable 4 iron, 4 sulfur cluster binding activity. Acts upstream of or within response to virus. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum and mitochondrion. Human ortholog(s) of this gene implicated in respiratory syncytial virus infectious disease. Orthologous to human RSAD2 (radical S-adenosyl methionine domain containing 2).

NR:

description
PREDICTED: radical S-adenosyl methionine domain-containing protein 2

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0051607 defense response to virus biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005811 lipid droplet cellular_component
GO:0046872 metal ion binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K15045 RSAD2; radical S-adenosyl methionine domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262946.1 True 1448 mRNA 0.49 6 14206780 14209877

Neighbor

gene id symbol gene type direction distance location
rnf144aa rnf144aa,rnf144a,LOC107752753,LOC107655314,LOC107553279 coding downstream 2199 14173271 ~ 14204581 (-)
adam17a adam17,adam17a,LOC107752755,LOC107655315,LOC107707689,LOC107563905 coding downstream 35086 14160519 ~ 14171694 (-)
itgb1bp1 itgb1bp1,LOC107655317,LOC107707691,LOC107679818,LOC107752756 coding downstream 59567 14142944 ~ 14147213 (-)
mboat2a mboat2,mboat2a,LOC107553282,LOC107752759,LOC107655319,LOC107707682 coding downstream 122839 14040353 ~ 14083941 (-)
LOC122361864 fut8a,LOC107674109,LOC107752771,LOC107592788,LOC107553275 coding downstream 574782 13626625 ~ 13631998 (-)
LOC122361997 slc22a15,LOC107750851,LOC107717086,LOC107671142,LOC107553868 coding upstream 182526 14392403 ~ 14397785 (-)
LOC122361878 LOC107594701,LOC107679774 coding upstream 189228 14399105 ~ 14406676 (-)
sox11a sox11a,LOC107752751,LOC107594691,LOC107679744 coding upstream 299895 14509772 ~ 14511663 (-)
colec11 colec11 coding upstream 525284 14735161 ~ 14740548 (-)
senp6b LOC107752747,LOC107679785 coding upstream 633146 14843023 ~ 14849883 (-)
G120989 NA non-coding downstream 117905 14088640 ~ 14088875 (-)
G120983 NA non-coding downstream 230554 13975747 ~ 13976226 (-)
G120982 NA non-coding downstream 242910 13963593 ~ 13963870 (-)
G120980 NA non-coding downstream 273095 13933420 ~ 13933685 (-)
G120929 NA non-coding downstream 391766 13777725 ~ 13815014 (-)
G121051 NA non-coding upstream 181507 14391384 ~ 14392042 (-)
G121069 NA non-coding upstream 241746 14451623 ~ 14456789 (-)
LOC122361512 NA non-coding upstream 252248 14462125 ~ 14580868 (-)
G121096 LOC107752749,LOC107594711,LOC107666252 non-coding upstream 567009 14776886 ~ 14777109 (-)
G121123 NA non-coding upstream 581052 14790929 ~ 14792068 (-)
kidins220a id2a,id2,kidins220,LOC107579075,LOC107707685,LOC107553286,LOC107655320,LOC107752760 other downstream 166569 13981547 ~ 14040211 (-)
LOC122361883 LOC107592775,LOC107752809,LOC100537549,LOC108433935,LOC107733136,LOC107674087 other downstream 1006088 13193177 ~ 13200692 (-)
G120660 LOC107752798,LOC107592762,LOC107697764,LOC107733171 other downstream 1386112 12817192 ~ 12820668 (-)
LOC122361973 LOC107592804,LOC107697765,LOC107752799,LOC107674033,LOC107733077 other downstream 1414911 12663239 ~ 12791869 (-)
lin52 lin52,LOC107594798 other downstream 1815232 12381281 ~ 12391548 (-)
LOC122361652 LOC107679745,LOC107752800,LOC107594718 other upstream 499614 14709491 ~ 14733577 (-)
myo6b myo6b,LOC107741840,LOC107594692,LOC107679792,LOC107600844,LOC107666253 other upstream 582309 14792186 ~ 14839813 (-)
ptgr2 ptgr2 other upstream 800949 15010826 ~ 15026415 (-)
crip1 crip1,LOC106611282,LOC107679815,LOC107594706,LOC107600860 other upstream 850116 15059993 ~ 15064678 (-)
crip2 crip2,LOC107594708,LOC107752734,LOC107679813,LOC107666262,LOC107741856,LOC107600859 other upstream 873941 15083818 ~ 15099957 (-)

Expression


Co-expression Network