ccdc28a (ccdc28a,LOC107752777,LOC107697785,LOC107592783,LOC107733152,LOC107594775)


Basic Information

Item Value
gene id ccdc28a
gene name ccdc28a,LOC107752777,LOC107697785,LOC107592783,LOC107733152,LOC107594775
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 13278776 ~ 13283695 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262963.1
TCAAAGTTTACACGCCGTTCACACCCACACAAGCGAAGGTGCCCACAGGGGGGGAAAAAGTCTTCCCGTGAAATATGAGAGGAAATACCATCGTCATTACTCAGCCTCATGCTGCTCGAATGATCTTTTAAATGCTAGACCGAAAGTCTTTCGTGACACGGGGCTGAGTACATGACAGAATTGCGGGTGAGAAAGTCAAAATGTATGCTGAAAACAAAGCCATTGAGCGTGAAAGGTTATCAGCTGTCGAATGCGTTTTAAAATTAATGACAGGTTCGATAAAGTGCGTTCCACCTCAGAAAACACCGAAAGGTCATGAACAGCACGGACAAGGCTTTTGATCGGCGCTGACAGTACATCCTTAAACAAAAACCGAAAATGCGCATGTCTGTGCTGTTTAAAACACTGTACACAATGGTGCGGGATGGGTGTGAGAGAGATAAAAGAAGTGTGATGTTTCTATCGAGCTTTTGTGGACGACGTGTTCGACGTAAGATACGGGCCACTTTGGCGTACATCAAATTGCCGAGAACCCTAAAAAGCGGAAATACTCCTAAAACAATAACCAATAAACAGATACTGAGGACACTCCAGTCAATTATCGACTAGCATATAACCCTCACAGCGTAAATCTCACATGCGCTGATGTGGTAAAACTGGCATAACGACTAATAAAGTGCTTATGAGTGTGTAATAGGCCTGTCTGCACAAAGGAAACGACCTCCTGCatcttttcctttatttttgcaGCCTTTTCCTGTTTCAAAAGGTAGACGCAAACGCtcgataacaaaataaacacttcaATTACAATTGTGTTGTTTCTCCAGCACAAAACGACTAAGGATGCAATGAATGCAATGACTAAGCAAATCCTGCCTTACACTAGCTTTTGCAAAAGTTGAACAAATGACagagtttacatttttgagGGAGAAACTATCCATTTGAACGGGCTTAACTTAAACCTCCAGGTTTCTCAAGAGTGTTTTAAGGGGGTCGACGACACGTTACTGACACCACTGAACAGAGACGCCTTTTCAAGAAATAAGTATTTCCAGCTTGTCAACAAAAACCGGTTCCTCGAGGTAAAGGAATAACGTCATGTCTCTCACACTATTTCCACTGTATTCAGTCAGACTATAAACAGCAATATCTGGACCCGCGTTATGTTCAAATGGGATTCAACTACAGCAtgactcctctctctctctatatatatataaaagaactGACAAATCCTCCAAAGCAACATTCAGGAAACCATACATGTTTCTTAAGACAACCCGATCTTATCTGAGTGTATACACCAATAGCAGTGATGTTTAATACCGCTGATTACAAGATGCACGGTTTACACCCAACGCCAGAAGGACAGAGCGCACTTTTTCCAGGTAATTCGGATGACacaatggaagaaaaaaataagaaacgtAAGAGCCCCAAACCATCTTCCAACCAGCCTCCTCCCTCGATCACCGCACGAAAAACCACATCCGGCGGCAGATCGCTCGGTGTTGGCGGTACACACTCCAGCCAGAGAACAAAGTATCGCAGGGGAGTGCGAGACAAGCCAAGGCCTCAGAGTCAGTCGGGGAAGAGCAACCAGTCTGCCCACATCCAGCACTCGTTTCTCACGGACGTGTCTGATGTTCAGGAGATGGAGAAGGGGCTGCTCGGCCTTCTTAACGACTTCCACTCTGGAAAACTGCAAGCTTTCGGCAACGAGTGCTCTATTGATCAGATGGAGCATGTGAGAGAAATGCAGGAAACGCTGGCACGTCTGCAGTTCGATCTGTATGGAGAAGTGGATGAGCTGCCAGAAGACCAGAGGAAGTCCGCTTACGACACCAACATGGATAAACTGTTATTAAATctgGAAGAGTTGAGCTCCTCAATACAAAAGCTCAACCTTGCTGACAGTCAAGATGTCCCCAGAACATCTAGCATATGAACGGCGAAAGCTCGACCATGGAGAATACAGTGTGCATATTTAGCACAGAAACGCTGTGGAGAAACAGCAGTATTACAGGCGTAACAGTGACACTGGATCTTAAACTTGTAGAATTGGTCCGCTTGGCTTGTTTGCACTCTATAGTTTTATAGATATGATATCAAAGAACAAATCCAAACAGTTGTGATGGAAACACTCACTTGTCCTTCTCATCACCCGTTACGAGAAATATATGTTCATGAGGTAATGTTCGATAACGTTGTGGTTTCTAATCTTATGCTTAAATGTTGCCTTGGAGTTGTACAATAGCAGCACCTTCGCATTTTCACTAATTCACTTTAACAAGGAACCGATGGGCTCCGTCTGTATTTATGCCCTGTCTCAAGGGAATGAACGAAAGAAAATGGCAGATTATTTTCATCGAGACGTCAGTTTCTCGAGACTGCAGAATGAAAGtaaaattgtattgtatatttttggttatagtcctatttacatattttattttgaattgaaatgttGGAAATGTAAAGCGTAACATAGGCTACTGGCTGAttgttgatttttattcatttttctgtcAATAAAATTCAATTGTATTACCCCA
>XM_043262964.1
TGATATGACCGAGATGACGTGTAAATCCCGGAAGTGCCTTTTGTAAACTTGCTGGTCGGTTGTACCAACTTTAGGGCAGCCTAATCTCGTCGAGAATGTCTTTCAGAGGGGATAATATATCGGTTTAAACAGCGGAGTCTTCCTTTGTGCGGTAATTCGGATGACacaatggaagaaaaaaataagaaacgtAAGAGCCCCAAACCATCTTCCAACCAGCCTCCTCCCTCGATCACCGCACGAAAAACCACATCCGGCGGCAGATCGCTCGGTGTTGGCGGTACACACTCCAGCCAGAGAACAAAGTATCGCAGGGGAGTGCGAGACAAGCCAAGGCCTCAGAGTCAGTCGGGGAAGAGCAACCAGTCTGCCCACATCCAGCACTCGTTTCTCACGGACGTGTCTGATGTTCAGGAGATGGAGAAGGGGCTGCTCGGCCTTCTTAACGACTTCCACTCTGGAAAACTGCAAGCTTTCGGCAACGAGTGCTCTATTGATCAGATGGAGCATGTGAGAGAAATGCAGGAAACGCTGGCACGTCTGCAGTTCGATCTGTATGGAGAAGTGGATGAGCTGCCAGAAGACCAGAGGAAGTCCGCTTACGACACCAACATGGATAAACTGTTATTAAATctgGAAGAGTTGAGCTCCTCAATACAAAAGCTCAACCTTGCTGACAGTCAAGATGTCCCCAGAACATCTAGCATATGAACGGCGAAAGCTCGACCATGGAGAATACAGTGTGCATATTTAGCACAGAAACGCTGTGGAGAAACAGCAGTATTACAGGCGTAACAGTGACACTGGATCTTAAACTTGTAGAATTGGTCCGCTTGGCTTGTTTGCACTCTATAGTTTTATAGATATGATATCAAAGAACAAATCCAAACAGTTGTGATGGAAACACTCACTTGTCCTTCTCATCACCCGTTACGAGAAATATATGTTCATGAGGTAATGTTCGATAACGTTGTGGTTTCTAATCTTATGCTTAAATGTTGCCTTGGAGTTGTACAATAGCAGCACCTTCGCATTTTCACTAATTCACTTTAACAAGGAACCGATGGGCTCCGTCTGTATTTATGCCCTGTCTCAAGGGAATGAACGAAAGAAAATGGCAGATTATTTTCATCGAGACGTCAGTTTCTCGAGACTGCAGAATGAAAGtaaaattgtattgtatatttttggttatagtcctatttacatattttattttgaattgaaatgttGGAAATGTAAAGCGTAACATAGGCTACTGGCTGAttgttgatttttattcatttttctgtcAATAAAATTCAATTGTATTACCCCA
>XM_043262965.1
gTTTCTGACCGCGGCTTTAGTTTAATTACAGTGCGCGTTGATATGACCGAGATGACGTGTAAATCCCGGAAGTGCCTTTTGTAAACTTGCTGGTCGGTTGTACCAACTTTAGGGCAGCCTAATCTCGTCGAGAATGTCTTTCAGAGGGGATAATATATCGGTTTAAACAGCGGAGTCTTCCTTTGTGCGGTAAAATTATACGTAATTCGGATGACacaatggaagaaaaaaataagaaacgtAAGAGCCCCAAACCATCTTCCAACCAGCCTCCTCCCTCGATCACCGCACGAAAAACCACATCCGGCGGCAGATCGCTCGGTGTTGGCGGTACACACTCCAGCCAGAGAACAAAGTATCGCAGGGGAGTGCGAGACAAGCCAAGGCCTCAGAGTCAGTCGGGGAAGAGCAACCAGTCTGCCCACATCCAGCACTCGTTTCTCACGGACGTGTCTGATGTTCAGGAGATGGAGAAGGGGCTGCTCGGCCTTCTTAACGACTTCCACTCTGGAAAACTGCAAGCTTTCGGCAACGAGTGCTCTATTGATCAGATGGAGCATGTGAGAGAAATGCAGGAAACGCTGGCACGTCTGCAGTTCGATCTGTATGGAGAAGTGGATGAGCTGCCAGAAGACCAGAGGAAGTCCGCTTACGACACCAACATGGATAAACTGTTATTAAATctgGAAGAGTTGAGCTCCTCAATACAAAAGCTCAACCTTGCTGACAGTCAAGATGTCCCCAGAACATCTAGCATATGAACGGCGAAAGCTCGACCATGGAGAATACAGTGTGCATATTTAGCACAGAAACGCTGTGGAGAAACAGCAGTATTACAGGCGTAACAGTGACACTGGATCTTAAACTTGTAGAATTGGTCCGCTTGGCTTGTTTGCACTCTATAGTTTTATAGATATGATATCAAAGAACAAATCCAAACAGTTGTGATGGAAACACTCACTTGTCCTTCTCATCACCCGTTACGAGAAATATATGTTCATGAGGTAATGTTCGATAACGTTGTGGTTTCTAATCTTATGCTTAAATGTTGCCTTGGAGTTGTACAATAGCAGCACCTTCGCATTTTCACTAATTCACTTTAACAAGGAACCGATGGGCTCCGTCTGTATTTATGCCCTGTCTCAAGGGAATGAACGAAAGAAAATGGCAGATTATTTTCATCGAGACGTCAGTTTCTCGAGACTGCAGAATGAAAGtaaaattgtattgtatatttttggttatagtcctatttacatattttattttgaattgaaatgttGGAAATGTAAAGCGTAACATAGGCTACTGGCTGAttgttgatttttattcatttttctgtcAATAAAATTCAATTGTATTACCCCA
>XM_043262966.1
CATGGCTCCCGTGATTACTAGGTAATTCGGATGACacaatggaagaaaaaaataagaaacgtAAGAGCCCCAAACCATCTTCCAACCAGCCTCCTCCCTCGATCACCGCACGAAAAACCACATCCGGCGGCAGATCGCTCGGTGTTGGCGGTACACACTCCAGCCAGAGAACAAAGTATCGCAGGGGAGTGCGAGACAAGCCAAGGCCTCAGAGTCAGTCGGGGAAGAGCAACCAGTCTGCCCACATCCAGCACTCGTTTCTCACGGACGTGTCTGATGTTCAGGAGATGGAGAAGGGGCTGCTCGGCCTTCTTAACGACTTCCACTCTGGAAAACTGCAAGCTTTCGGCAACGAGTGCTCTATTGATCAGATGGAGCATGTGAGAGAAATGCAGGAAACGCTGGCACGTCTGCAGTTCGATCTGTATGGAGAAGTGGATGAGCTGCCAGAAGACCAGAGGAAGTCCGCTTACGACACCAACATGGATAAACTGTTATTAAATctgGAAGAGTTGAGCTCCTCAATACAAAAGCTCAACCTTGCTGACAGTCAAGATGTCCCCAGAACATCTAGCATATGAACGGCGAAAGCTCGACCATGGAGAATACAGTGTGCATATTTAGCACAGAAACGCTGTGGAGAAACAGCAGTATTACAGGCGTAACAGTGACACTGGATCTTAAACTTGTAGAATTGGTCCGCTTGGCTTGTTTGCACTCTATAGTTTTATAGATATGATATCAAAGAACAAATCCAAACAGTTGTGATGGAAACACTCACTTGTCCTTCTCATCACCCGTTACGAGAAATATATGTTCATGAGGTAATGTTCGATAACGTTGTGGTTTCTAATCTTATGCTTAAATGTTGCCTTGGAGTTGTACAATAGCAGCACCTTCGCATTTTCACTAATTCACTTTAACAAGGAACCGATGGGCTCCGTCTGTATTTATGCCCTGTCTCAAGGGAATGAACGAAAGAAAATGGCAGATTATTTTCATCGAGACGTCAGTTTCTCGAGACTGCAGAATGAAAGtaaaattgtattgtatatttttggttatagtcctatttacatattttattttgaattgaaatgttGGAAATGTAAAGCGTAACATAGGCTACTGGCTGAttgttgatttttattcatttttctgtcAATAAAATTCAATTGTATTACCCCA

Function

symbol description
ccdc28a Predicted to enable guanyl-nucleotide exchange factor activity. Orthologous to human CCDC28A (coiled-coil domain containing 28A).

NR:

description
coiled-coil domain-containing protein 28A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262963.1 True 2561 mRNA 0.43 6 13278776 13283695
XM_043262964.1 False 1318 mRNA 0.44 6 13278776 13281392
XM_043262965.1 False 1368 mRNA 0.43 6 13278776 13281430
XM_043262966.1 False 1188 mRNA 0.44 6 13278776 13281203

Neighbor

gene id symbol gene type direction distance location
LOC122361854 ect2l,LOC107592784,LOC107752807 coding downstream 105 13270357 ~ 13278671 (-)
efr3ba efr3ba,LOC107697777,LOC107592778,LOC107752767,LOC107733134 coding downstream 51039 13206002 ~ 13227737 (-)
prox1a prox1a,LOC107752784,LOC107592773,LOC107697775,LOC107594785,LOC107733138,LOC107674077 coding downstream 239350 13003579 ~ 13039426 (-)
smyd2a smyd2a,LOC107592771,LOC107752785,LOC107697773,LOC107733184,LOC107594786,LOC107674111 coding downstream 290884 12977069 ~ 12987892 (-)
cenpf cenpf,LOC107592772 coding downstream 301850 12962588 ~ 12976926 (-)
tmem121aa tmem121a,tmem121,LOC107594772,LOC107674105,LOC107592808,LOC107697696 coding upstream 34716 13318411 ~ 13345591 (-)
tedc1 LOC107752774,LOC107697787,LOC107592785,LOC107733103,LOC107594770,LOC107674045 coding upstream 100845 13384540 ~ 13395619 (-)
dnal1 dnal1 coding upstream 112705 13396400 ~ 13399366 (-)
LOC122361864 fut8a,LOC107674109,LOC107752771,LOC107592788,LOC107553275 coding upstream 342930 13626625 ~ 13631998 (-)
mboat2a mboat2,mboat2a,LOC107553282,LOC107752759,LOC107655319,LOC107707682 coding upstream 756658 14040353 ~ 14083941 (-)
G120865 LOC107752772,LOC107697781,LOC107733167,LOC107592781,LOC107674095,LOC107594780 non-coding downstream 9404 13268577 ~ 13269372 (-)
G120833 NA non-coding downstream 95327 13180074 ~ 13183449 (-)
G120843 NA non-coding downstream 104585 13173948 ~ 13174191 (-)
G120767 NA non-coding downstream 127438 13151008 ~ 13151338 (-)
G120762 NA non-coding downstream 187406 13091080 ~ 13091370 (-)
G120871 NA non-coding upstream 12575 13296270 ~ 13296536 (-)
G120929 NA non-coding upstream 494030 13777725 ~ 13815014 (-)
G120980 NA non-coding upstream 649725 13933420 ~ 13933685 (-)
G120982 NA non-coding upstream 679898 13963593 ~ 13963870 (-)
G120983 NA non-coding upstream 692052 13975747 ~ 13976226 (-)
LOC122361883 LOC107592775,LOC107752809,LOC100537549,LOC108433935,LOC107733136,LOC107674087 other downstream 78084 13193177 ~ 13200692 (-)
G120660 LOC107752798,LOC107592762,LOC107697764,LOC107733171 other downstream 458108 12817192 ~ 12820668 (-)
LOC122361973 LOC107592804,LOC107697765,LOC107752799,LOC107674033,LOC107733077 other downstream 486907 12663239 ~ 12791869 (-)
lin52 lin52,LOC107594798 other downstream 887228 12381281 ~ 12391548 (-)
evla evla,LOC107719466,LOC107697733,LOC107563375,LOC107594809,LOC107733132,LOC108425620 other downstream 1334048 11915468 ~ 11944728 (-)
kidins220a id2a,id2,kidins220,LOC107579075,LOC107707685,LOC107553286,LOC107655320,LOC107752760 other upstream 697852 13981547 ~ 14040211 (-)
LOC122361652 LOC107679745,LOC107752800,LOC107594718 other upstream 1425796 14709491 ~ 14733577 (-)
myo6b myo6b,LOC107741840,LOC107594692,LOC107679792,LOC107600844,LOC107666253 other upstream 1508491 14792186 ~ 14839813 (-)
ptgr2 ptgr2 other upstream 1727131 15010826 ~ 15026415 (-)
crip1 crip1,LOC106611282,LOC107679815,LOC107594706,LOC107600860 other upstream 1776298 15059993 ~ 15064678 (-)

Expression


Co-expression Network