vcpkmt (vcpkmt,LOC107559878,LOC107687351)


Basic Information

Item Value
gene id vcpkmt
gene name vcpkmt,LOC107559878,LOC107687351
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 20800053 ~ 20801973 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263075.1
GTGACGTAGAATGTTCAGCGAGTCACGAAAAAAACATGGCGACTGACGAGGACTCGGAAGATTACTTCGTTAGAGAAATAGAGAAAAATGACGGGTCTGTTTTAAGAATGTATCAGTGCAGCAAAGGGGACGTGGGCTGTGTGGTGTGGGACGCTGCTATTGTCCTGTCAAAATACCTCGAAACGGAACAGTTTAGCGGTGTTCAGTCTGGTGTTAGTGCCTGGTCCTCTAAGAACATCGTCGAGCTGGGCGCAGGAACGGGACTCGTGGGTCTCGTGGCTGCAACCCTGGGGGCAAATGTCACGGTGACCGATCTAGAAGACCTGCAGCCTCTCCTTCAACTAAACATTAAGAAAAACCAGCACCTCATCCATACAGGCTCAATCACAGCCAAGGTACTGAAATGgGGAGGAAATGTCGAAGGATTTCTACCTCATCCTCATTATATTCTGATGGCTGATTGTATCTACTATGAGCAGtCTGTGGAGCCACTGGTGGAGACTCTGAAACTCTTGGCTGGACCAGAGACGCGTATCATCTGTTGCTATGAGCAACGCACTGTTGGTGTAAATCCTGAAATAGAAAAGAGATTCTTTGAGCTACTTCTGCAGGAATTCCAGTCGGAGGAGATCCCATCTGAGAAACAAGACCCCGAGTTCAACAGTCCTGACATTCACGTTCTCCACCTACAGCGAAGAGTCCACTGAAtggcttttatttgtttgaaatgtcGAAGATGGGTCGTGTGTGTTCGTGTTTCAATGGACTGTGGTGTTGTTGGTCAGATGCTGAATACACACCGTTTTAAGTGCTCACGTGGTATGGGAGGTCGGCCTTAATGCGAGCGCTTACCTGCGTTTGCAGACAAACAAGTTTAATTGAATCATTCTGTGCGTGTTAAACTGGCAAAAATAAATCccgaatgtgtgttttttttttacatgcctATTTATCTGCAAATAAACACTTTctaaaatgaa

Function

symbol description
vcpkmt Predicted to enable protein-lysine N-methyltransferase activity. Predicted to be involved in peptidyl-lysine trimethylation. Predicted to act upstream of or within methylation. Predicted to be active in cytosol. Orthologous to human VCPKMT (valosin containing protein lysine methyltransferase).

NR:

description
protein-lysine methyltransferase METTL21D isoform X2

GO: NA

KEGG:

id description
K21806 VCPKMT, METTL21D; protein N-lysine methyltransferase METTL21D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263075.1 True 980 mRNA 0.46 5 20800053 20801973

Neighbor

gene id symbol gene type direction distance location
LOC122361586 LOC107739219,LOC107679812,LOC107662604,LOC107732422,LOC107586859,LOC107679809,LOC107559908 coding downstream 1076 20788110 ~ 20798977 (-)
LOC122361898 LOC107679809,LOC107739222,LOC107559908 coding downstream 2669 20795021 ~ 20797384 (-)
LOC122361456 NA coding downstream 74710 20699061 ~ 20725343 (-)
LOC122361508 aspg,LOC107739215 coding downstream 111498 20680462 ~ 20688555 (-)
LOC122361502 asns,LOC107731557,LOC107702657,LOC107754811,LOC107672863,LOC108410560 coding downstream 140945 20650588 ~ 20659108 (-)
si:ch211-202f3.4 si:ch211-202f3.4,LOC107732402,LOC107662605,LOC107559907,LOC107586858,LOC107739220 coding upstream 1184 20803157 ~ 20813946 (-)
LOC122361695 si:ch211-202f3.3,LOC107732416,LOC107559906,LOC107664433,LOC107662629,LOC107739218,LOC107586857 coding upstream 23005 20824978 ~ 20837545 (-)
LOC122361693 si:ch211-202f3.3,LOC107739218,LOC107664433,LOC107586857,LOC107559906,LOC107732416,LOC107662629 coding upstream 37653 20839626 ~ 20846832 (-)
marc1 LOC107662611,LOC107732350,LOC107586856,LOC107559876 coding upstream 81121 20883094 ~ 20886023 (-)
kcnk3b kcnk3b,LOC107664451,LOC107739252,LOC107586855,LOC107662623,LOC107732341,LOC107559904 coding upstream 85163 20887136 ~ 20893002 (-)
G122646 NA non-coding downstream 133383 20658480 ~ 20666670 (-)
G122628 NA non-coding downstream 159641 20595306 ~ 20640412 (-)
G122625 NA non-coding downstream 271142 20525065 ~ 20528911 (-)
G122594 NA non-coding downstream 632412 20167024 ~ 20167641 (-)
G122566 NA non-coding downstream 980866 19818960 ~ 19819187 (-)
G122754 NA non-coding upstream 53149 20855122 ~ 20857658 (-)
G122775 NA non-coding upstream 56298 20858271 ~ 20861117 (-)
G122783 NA non-coding upstream 72799 20874772 ~ 20875152 (-)
G122786 NA non-coding upstream 78033 20880006 ~ 20880453 (-)
G122788 NA non-coding upstream 84215 20886188 ~ 20886913 (-)
aspg aspg,LOC107586863,LOC107739215,LOC107732472,LOC107662599 other downstream 29824 20757716 ~ 20770229 (-)
LOC122362234 kif26a,kif26ab,LOC107739214,LOC107662598,LOC107732702,LOC107559913,LOC107586892 other downstream 163894 20556723 ~ 20636159 (-)
LOC122362030 cldn20,tfb1m,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299,LOC108269830,LOC107680107,LOC107728964,LOC107675319 other downstream 746914 19824459 ~ 20053139 (-)
ralgapa2 ralgapa2,LOC107687934 other downstream 1517597 19147331 ~ 19282456 (-)
LOC122362226 vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939,LOC107758712 other downstream 1963433 18819663 ~ 18836620 (-)
nenf nenf,LOC107739254,LOC107664444,LOC107732830,LOC107662615,LOC107586886 other upstream 113228 20915201 ~ 20916639 (-)
tmem63c tmem63c,LOC107732232 other upstream 276088 21078061 ~ 21116556 (-)
G123095 NA other upstream 939545 21741518 ~ 21742973 (-)
LOC122362121 gskip,LOC107731910,LOC107561679,LOC107664426 other upstream 941717 21743690 ~ 21748036 (-)
G123216 NA other upstream 1068746 21870719 ~ 21871201 (-)

Expression


Co-expression Network