LOC122361898 (LOC107679809,LOC107739222,LOC107559908)


Basic Information

Item Value
gene id LOC122361898
gene name LOC107679809,LOC107739222,LOC107559908
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 20795021 ~ 20797384 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263076.1
GAGTGGTAAGTGAAATAGGAGAAGCTTGACTGTGAATAACAAGAGCTTAAGGCACATCCCAAGTCCTAACTTGTTCAACTAGCCCATCAATTTGGGTATAGTAGATGTTAGTACAAATCAACTTAATTCCTAACCATTAAAAGtcaattcatacaaattcacaAGGTTTTCTACCCCTGGCTTTTTAATGCATCACTTTTCCTTCCAGAGCATCAGTAAGTGTTTGAACCTTCTTTAACAGCTAATAATCCTAGAGCTGTTGGGAAGAGGCAAATGATGGCTAAGCCCACATTAATGGTTCATAGACTTTCATTATAAGAATTTTGAATTGAACGTATATGTAAATTTGGCAGCTAACATCCCAAGGAGAGCCGGTGAGGCTGGTGAGAGTGTTGAACCCTTGGGGAAAAGGCGAGTGGAACGGTGCCTGGAGTGACAAGTCATTATTGTGGAACAACGTGAGTGAAAGTGACCAATCCAACTGTCTTTCTTCGGCCATTGATGGGGAGTTCTGGATGTCAATGGAGGACTTCATTGCAAACTTCAAGGATATTACTATTTGCTGCCTCAGTCCTGATTTTCTGAACAGTTCCTCTAAATACAGCTGGACTTCCACATGCTATTATAGCAGCTGGGATGTTGGAACTACAGCTGGTGGCCGTCCCAGGAATAAAGAGACTTTCTGGACAAACCCTCAGTTTCGAATAAGGATTGAGCAGCTTGATGAGGAATGTGCCAGTGGCCAGTGTCCTGAAAACATTCTGGTGTCCCTCATGCAGCTCCATGAGAACAGATACAGAAGTCTTGTTTCTAACTTCTCCATTGGCTTCAGCGTTTATCTGATACCACCAGAGATGAAAGAGGAGAAGTTCCCAGCCAAGTTCTTCTATAATAAACACCCTGTGGAAGCTACCGAAAAATTTACCCAAGTGAGACTTGTGATGAAATTATTCAAGCTTGAACCAGGAGAGTATCTCATTGTACCATCCACTTTTAATCCTAACGAGTCTGCAGAATTCATGCTGTCCATCTCCACAAAGAGTGGGTCTCATAAGAAGAATTAAAAATCTGTCATGGCATTGTATAAAATCATTGTCAGGGAACAATCAGTGGGACACCAGTTGAATGGAAAGACACCAGTGCATTGATCttgtattagttattttattgtcTTGTCACATTATTGCAAAACGTTAgtgaaaaaacataataaaaatagactttTCCTGTGTTTTCGACATA

Function

NR:

description
PREDICTED: calpain-1 catalytic subunit-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263076.1 True 1242 mRNA 0.41 6 20795021 20797384

Neighbor

gene id symbol gene type direction distance location
LOC122361456 NA coding downstream 69678 20699061 ~ 20725343 (-)
LOC122361508 aspg,LOC107739215 coding downstream 106466 20680462 ~ 20688555 (-)
LOC122361502 asns,LOC107731557,LOC107702657,LOC107754811,LOC107672863,LOC108410560 coding downstream 135913 20650588 ~ 20659108 (-)
LOC122361585 NA coding downstream 267446 20526019 ~ 20527575 (-)
LOC122362405 NA coding downstream 525319 20269585 ~ 20269702 (-)
vcpkmt vcpkmt,LOC107559878,LOC107687351 coding upstream 2669 20800053 ~ 20801973 (-)
si:ch211-202f3.4 si:ch211-202f3.4,LOC107732402,LOC107662605,LOC107559907,LOC107586858,LOC107739220 coding upstream 5773 20803157 ~ 20813946 (-)
LOC122361695 si:ch211-202f3.3,LOC107732416,LOC107559906,LOC107664433,LOC107662629,LOC107739218,LOC107586857 coding upstream 27594 20824978 ~ 20837545 (-)
LOC122361693 si:ch211-202f3.3,LOC107739218,LOC107664433,LOC107586857,LOC107559906,LOC107732416,LOC107662629 coding upstream 42242 20839626 ~ 20846832 (-)
marc1 LOC107662611,LOC107732350,LOC107586856,LOC107559876 coding upstream 85710 20883094 ~ 20886023 (-)
G122646 NA non-coding downstream 128351 20658480 ~ 20666670 (-)
G122628 NA non-coding downstream 154609 20595306 ~ 20640412 (-)
G122625 NA non-coding downstream 266110 20525065 ~ 20528911 (-)
G122594 NA non-coding downstream 627380 20167024 ~ 20167641 (-)
G122566 NA non-coding downstream 975834 19818960 ~ 19819187 (-)
G122754 NA non-coding upstream 57738 20855122 ~ 20857658 (-)
G122775 NA non-coding upstream 60887 20858271 ~ 20861117 (-)
G122783 NA non-coding upstream 77388 20874772 ~ 20875152 (-)
G122786 NA non-coding upstream 82622 20880006 ~ 20880453 (-)
G122788 NA non-coding upstream 88804 20886188 ~ 20886913 (-)
aspg aspg,LOC107586863,LOC107739215,LOC107732472,LOC107662599 other downstream 24792 20757716 ~ 20770229 (-)
LOC122362234 kif26a,kif26ab,LOC107739214,LOC107662598,LOC107732702,LOC107559913,LOC107586892 other downstream 158862 20556723 ~ 20636159 (-)
LOC122362030 cldn20,tfb1m,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299,LOC108269830,LOC107680107,LOC107728964,LOC107675319 other downstream 741882 19824459 ~ 20053139 (-)
ralgapa2 ralgapa2,LOC107687934 other downstream 1512565 19147331 ~ 19282456 (-)
LOC122362226 vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939,LOC107758712 other downstream 1958401 18819663 ~ 18836620 (-)
nenf nenf,LOC107739254,LOC107664444,LOC107732830,LOC107662615,LOC107586886 other upstream 117817 20915201 ~ 20916639 (-)
tmem63c tmem63c,LOC107732232 other upstream 280677 21078061 ~ 21116556 (-)
G123095 NA other upstream 944134 21741518 ~ 21742973 (-)
LOC122362121 gskip,LOC107731910,LOC107561679,LOC107664426 other upstream 946306 21743690 ~ 21748036 (-)
G123216 NA other upstream 1073335 21870719 ~ 21871201 (-)

Expression


Co-expression Network