aqr (aqr)


Basic Information

Item Value
gene id aqr
gene name aqr
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 18282076 ~ 18311121 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263121.1
GTTGTCATTAGCCGCGACTTTCAGTTGCACATGTTAGCATACAGCTAAAGCTACGCAACGTATTCATGACGTTTCTGTTATAAACAAAGCGTGTATTGATTAGCTGTACTGCTTAAGATTGCAGCGTAtatatgattgttttttttgttttcagcagtAAATGATTTGAATgacacattcattcattaaggTTGATATACCGAAGCCTGGAGTGATCAGCGAGCAACggggttgtttttttattttgatcttCGTTATTAATGGTTGTGTAAATCATGCAGAAGGACTCGAGAGTGATAAAGACCTCTGCTCCTCCCGTGTCTCAGATTAACGCGGAATATGTCACTCAGCTTTCAAACAAATACTGGGCTCCTCATGAGAACAAGCTAGCATTTGATTCTCAGGTCATTGAAGACATTTACCAGAATGAGATTCTTAAATCAAAGTTCGCCATCAGGAAAATCATGCTGTTGGAGTTCAGCCAGTATCTGGAGAACTACCTGTGGCCGAACTACACGCCTGAAGCCTCCAGTAACGGCTACCTCATGTCCATCTGCTGCATCGTCAATGAGAAGTTTCGAGAAAATGTCCCCGCTTGGGAGGTCTTTAAGAAAGCGCCCGCACACTTCCCTCACTTCTTCAAGTGTGTGATGGAGTCGTGTCTGTCGGGCGAGCGGCTCGGCCTGCCTCTGAAGGAGCAGACGGTGCTCCTGCTCTTCCTCGATCACTGCTTCAACAGTCTGGAAGTGGACTTGATCCGTGAGCAGGTGCAGAAGCTGGTCTCTCTGCCCATGTGGATGTGTCTGGTGCCGacgaGGCTGCAGCAGGAACTCGGCAAGGTCCCAAAACTGCAGAAGTTCTGGAACCTCATTAAGAAGAACTACGAGAAGATGGACCCGCAGGATATGGAGCAAGCTAAGAAGGAGCGCACCTTTCTGGCTTCCCTCATCAAGAAGTTCCTGGTGGTGCTCATGTCTATCCCTGCTGCAGGCCCTGTCGCCATGGAGAAGGTTCACTACTGTGAGAGATTCATTGAGTTCATGATCGACCTGGAGGCTCTCCTCCCGACCCGCCGCTGGTTCAACACGGTGCTGGATGACGCTCATCTGGTGGTCAACTGCCAGCTGTCTCACCTCACCGACAGGGAGAAAGAGGGTCACCTCTTCTGCCAGCTCCTGGACATGTTGAAGTTCTACACTGGCTTTGAGATCGGTGATCAGACAGGAAATGCACTCACACAGAAAGAGATGACCACGCTTCACTACGACAGAATCACCTCTctgcagagagcagcgtTTGCTCATTTCCCTGAGCTCAATGATTTTGCCCTGTCTAATGTGGCCGCTGTGGACACGCGAGAGTCCCTCACCAAACACTTCGGCCATCTCAGTCCCAATACCCTCCACCGGGTGTCAGCGTACCTGTGTCTCCTCCCTGAGCTTCCTGAAGGAGAAGAAACATCTTACGATAAAGAATTCCTCCTGGAGCTGCTGGTGTCCCGTCACGAGAGACGAATCTCCCAGATAGAGCAGCTCAACCAGATGCCTCTGTACCCCACCGAGAAGATCATCTGGGACGAGAACATCGTTCCCACCGAGTACTACTCTGGAGAAGGGTGTTTAGCTCTGCCCAAGCTGAACCTCCAGTTCCTGACCCTCCACGACTATCTGTTGAGAAACTTCAACCTCTTCCGCCTGGAGTCCACCTATGAAATCCGTCAGGATATCGAAGACGTCGTGTTACGGATGAAGCCATGGCAGTCGGAGTACGGAGGAGTGGTGTTCGGAGGATGGGCCAGAATGGCGCAGACCATAGCTTCGTTTTCTATCGTGGAGGTGGCCAAGCCAAACATCGGAGAGAACTGGCCTGCCCGCGTCCGCGCTGACGTCACCCTTAACCTCAACGTCCGGGATAACATCAAAAACGAGTGGGAGGggctGCGGAAGCACGACGTTTGCTTTCTGATCACGGTCCGGCCCATGCTGCTCTACGGCACGCGCTTTGACCGCCGGCAGCCGTTTGTGGATCAGGCCGGTCTGGTGTACGTGAGAGGCTGTGAGGTGCAGGGCATGCTGGATGATAAGGGCCGCGTCATTGAGGAAGGTCCGGATCCGAAGCCCAAATTAAGAGGCGACACCAGGACATTTCGTGTATGGCTCGACCCAAACCAGTACCAGCAGGACATGACCAACAGCATCCAGAACGGAGCCGAAGACCCCTATGAGACCTTCAATATCATCATGAGACGCAAACCCAAAGAGAACAACTTCAAGGCCGTGTTGGAGACCATTCGTAACCTGATGAACACCGAGTGTGTGGTGCCCGACTGGCTTCACGACATCATCCTGGGTTATGGAGATCCTGGTAGCGCCCATTACTCAAAGATGCCCAACCAGATTTCCTCTCTGGACTTCAATGACACCTTCCTGTCCATCGAGCACCTGAAGTCCTGTTTCCCCAATCACACGGTGAAGGTGACCGAGGAAGATCCCGCTCAACAGGTCCCGCCTTTCAGGATTCGGTTCCCCGCGCAGAATGCGAAGGGTAAAAAGCGTAGAGCGAACGAGGAGGAGAAGCCGGAGGAAGAAGATCTCACTCTGGTGGTGGAGCCTCATGTGATTCCTAACAGAGGCCCGTATCCTTACAACCAGCCCAAGCGAAACACCATCCAGTTTACACCAACGCAGATTGAAGCCATTCGTGCAGGGATGCAACCGGGACTTACTATGGTTGTTGGTCCTCCCGGCACAGGAAAAACAGACGTGGCCGTTCAGATCATCTCCAACCTGTACCACAACTTTCCCGAGCAAAGGACGCTCATCGTCACACACTCAAATCAGGCTCTGAACCAGCTGTTTGAGAAGATTATGGCATTGGACATTGATGAGCGTCACCTTCTGCGTCTGGGACAcggagaagaagaactggagaCTGAGAAAGATTTCAGCAGGTATGGAAGAGTGAACTACGTTCTGTCTCGCCGTCTGGAGCTCCTGCGGGAGGTGGCGCGTCTGCAGGAGAGTCTAGATGTTCCTGGAGATGTCTCCTACACCTGCGAGACCGCTGGACACTTCTACCTCTACCAGGTAATGTCACGCTGGGAGGAATACATGAGTAAAGTGAAGCCGAAGCCCAGTCGAGAGGTGAAGACGGAGGACGTGGCGTCACACTTCCCCTTCCAGAAGTACTTCTCCAACGCTCCTCAGCCAGTGTTCAAAGGCCAGTCCTATCAGGAGGACATGGACATCGCTGAGGGCTGCTACCGCCACATCCGCAAGATCTTCACCCAGCTGGAGGAGTTCAGGGCGTTCGAGCTGTTGCGCAGTGGACTGGACCGATCCAAATACCTGCTGGTGAAAGAGGCCAAGATCATCGCCATGACCTGCACTCACGCCGCCCTCAAACGCCACGACCTGGTGGAGCTGGGCTTCAAGTATGATAATATCCTGATGGAGGAAGCAGCTCAGATCCTGGAGATTGAGACCTTCATCCCACTACTGCTACAGAATCCAGAGGATGGCTACAGTCGACTCAAGCGCTGGATTATGATTGGCGATCACCATCAGCTGCCTCCTGTCATTAAGAACATGGCCTTTCAGAAATATTCCAACATGGAGCAGTCGCTCTTCACTCGCTTTGTGCGTCTGGGAGTCCCCACTGTAGACCTGGACGCTCAGGGCCGAGCACGGGCCAGtcTGTGTAACCTGTATAACTGGCGCTATAAGCAGCTGGGAAACCTCCCTCATGTTCAGCTCCAGCCTGAGTTCCAGGCGCCAAACCCTGGCTTCACCTACGACTTCCAGCTCGTCAATGTGGAGGACTTCAACGGCGTGGGTGAATCAGAACCCAACCCATACTTTTATCAGAATCTGGCGGAGGCCGAGTATGCGGTGGCGCTGTACATGTACATGCGTCTGCTGGGATATCCTGCCGAACGCATCAGCATACTGACCACCTACAACGGCCAGAAACACCTGATACGAGACGTCATCAACCAGAGGTGTTCCAGCAACTCCTTCTTCGGACAGCCCAGTAAAGTGACCACGGTGGACAGGTTCCAGGGTCAACAGAACGATTACATCATCCTCTCGCTGGTCCGCACCAAAGCTGTAGGACATTTGAGAGACGTGCGGCGTCTGGTCGTGGCCATGTCTCGTGCGAGGCTCGGCCTCTACATATTCGCTCGAGTGTCTCTGTTTCAGAACTGCTATGAGCTGACGCCAGCCTTTAGCCAGCTGACCGGCCGACCTCTGCAGCTGCACATCCGGCCCCATGAATACTACAGCTCTACGGAGGGGCGCTCGGCCCGGCCTGATCAGGTGGTCAAGGACATGCCGGAGATGGCTAACCTGGCTTACAACATGTACATGCACATGATTCAGAGCATGCAGCAGCACAGACAAcagcagcagcagcagctcctgGATCCTCCTCGTCAGCTGCTCAGTTCAGAGGAGCCCATGGAGGCCGAGGAAGAGCGTCCCGAGACTCAGAGTCCGAGTGAAGAGCAGCAGCCCACAGCcgctgaggaagaggagggacAGGCGAAGACGGAGGAGGAAGAGCAGGATCATAGTAAAATGCCTGAACACCCGGGCAGAGACAGCGACAGCGGAGACAGTGACGAGGACGGAGAGGCCTAGAGGACCTCGCTCACATACAGAGTATTACCGAACATCGAGGGTTAAATGTTCATTCATCTTTTGTAAGAGAGcttttgtaataaaaagaaattaaaaatgaa

Function

symbol description
aqr Predicted to enable mRNA binding activity. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of catalytic step 2 spliceosome. Orthologous to human AQR (aquarius intron-binding spliceosomal factor).

NR:

description
PREDICTED: intron-binding protein aquarius

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0097157 pre-mRNA intronic binding molecular_function

KEGG:

id description
K12874 AQR; intron-binding protein aquarius

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263121.1 True 4744 mRNA 0.53 36 18282076 18311121

Neighbor

gene id symbol gene type direction distance location
LOC122361452 gjd2,LOC107752716,LOC107565221,LOC107687856 coding downstream 5950 18270871 ~ 18276126 (-)
fosaa fosaa,fos,LOC107723273,LOC107702235,LOC108423428,LOC107735358 coding downstream 323481 17952048 ~ 17958595 (-)
jdp2a jdp2,jdp2a,LOC107701522,LOC107589793,LOC107702236 coding downstream 332838 17939741 ~ 17949238 (-)
flvcr2a flvcr2,flvcr2a,LOC107702238,LOC107589770,LOC106591116 coding downstream 345852 17916202 ~ 17936224 (-)
ttll5 ttll5 coding downstream 371046 17833322 ~ 17911030 (-)
paplna papln,paplna coding upstream 2560 18313681 ~ 18341936 (-)
psen1 psen1,LOC107684238,LOC107753355,LOC107687832,LOC107723284 coding upstream 36304 18347425 ~ 18355107 (-)
trappc12 trappc12,LOC107684236,LOC107687835,LOC107753354,LOC107723257,LOC107589762 coding upstream 62869 18373990 ~ 18389654 (-)
ccr6b LOC107558470,LOC107753366,LOC107687955,LOC107758715,LOC107687848,LOC107589789 coding upstream 288104 18599225 ~ 18602734 (-)
atp6v1c2 LOC107687954,LOC107753364,LOC107558472,LOC107687850,LOC107589777,LOC107758708 coding upstream 294020 18605141 ~ 18616059 (-)
G122019 NA non-coding downstream 58662 18223122 ~ 18223414 (-)
G121986 NA non-coding downstream 69660 18173717 ~ 18212416 (-)
G122013 NA non-coding downstream 73694 18202054 ~ 18208382 (-)
G122015 NA non-coding downstream 73725 18205506 ~ 18208351 (-)
G121987 NA non-coding downstream 111050 18166757 ~ 18171026 (-)
G122079 NA non-coding upstream 47621 18358742 ~ 18359108 (-)
G122081 NA non-coding upstream 58263 18369384 ~ 18369874 (-)
G122104 NA non-coding upstream 110493 18421614 ~ 18425369 (-)
G122114 NA non-coding upstream 115192 18426313 ~ 18426728 (-)
G122115 NA non-coding upstream 116834 18427955 ~ 18428405 (-)
LOC122361613 NA other downstream 504 18279458 ~ 18281572 (-)
LOC122361562 otofb,LOC107752720,LOC107701524,LOC107723281,LOC108423539 other downstream 277862 17982051 ~ 18004214 (-)
acyp1 acyp1 other downstream 318095 17962289 ~ 17963981 (-)
LOC122362005 crim1,LOC107582940,LOC107679775,LOC107662656 other downstream 2330638 15829484 ~ 15951438 (-)
LOC122362003 LOC107664362,LOC107560152,LOC107752022,LOC107658150 other downstream 2515061 15760343 ~ 15767015 (-)
LOC122361943 NA other upstream 320136 18631257 ~ 18644992 (-)
G122247 NA other upstream 475761 18786882 ~ 18790880 (-)
LOC122362226 vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939,LOC107758712 other upstream 508542 18819663 ~ 18836620 (-)
ralgapa2 ralgapa2,LOC107687934 other upstream 836210 19147331 ~ 19282456 (-)
LOC122362030 cldn20,tfb1m,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299,LOC108269830,LOC107680107,LOC107728964,LOC107675319 other upstream 1513338 19824459 ~ 20053139 (-)

Expression


Co-expression Network