trappc12 (trappc12,LOC107684236,LOC107687835,LOC107753354,LOC107723257,LOC107589762)


Basic Information

Item Value
gene id trappc12
gene name trappc12,LOC107684236,LOC107687835,LOC107753354,LOC107723257,LOC107589762
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 18373990 ~ 18389654 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263143.1
ATACGTCATTGCGCATGCGCGTGTTTACACTGCTGTCATCCTACCGTTCATTTCACAGAAgGGAACATCCAGGCTGGACTCATGGACAGCAGTGAAGGTCCAGCCCAGAGGCCTGTTACTCTGGATATAGATGGAGCGGGTGATATGCTAGAAACCTCCGTCCCGCCCCAGACTGACCCGGCAGAAGCATCTTTCAGAGAGGAGAGCATCGACCTGGACGCCGAAGCGTTTGTCTCACCTCAGGAGGACAGCAGTCACTCTGAGAGCCTAATAGGCAAGCTGAACGACCAGATGATGGAGAGCGTGATGATATCCGACTCCCCGAACAGTGAGGAAGAGGACGTGGTTCCCATTGACTCGATTTTGGAGCAGAATGAAGAGGAGGAGGCCAAAACATCCGACGGAGATACAGAAGAGAGAAACGAAGACGTTAGCACAGCCAGCGCTGCTGAACTTGAGGAGACATCTGAGGCTTTGTTTAAAGAAGAGAACGGGGAGGAGAAGATTGTGCAGGCGGATGACAAAAGGGAAACTGTTTCACCGGATGACCCGAAACCAGAGGCTCCCAAAACTCAGGATACAGCGCTTGAGATGGATGCAGATACGCCCCCCAAAGACGAGGCTGTCCCGGTGTGTACCATCTTCAGCCAGGGCGTACAATCCAAAGCACAAGCCCTGATTCCCGACGGCTTTCAGCCCACGCTGGTAAAATCTCCAAGCTTCACCATCGGCAACACAGAAACCCCCAACAAGCTGGTCCCTCAGGTGTGCCAGCCGAGCCCCAGCCTCAGCAAGTTCTTCACGGACAACGGCGCGGTCAACCCCGCCTCCGATTTCTTCGATTCCTTCACGACTTCCACCTCTTTCATATCAATCAGCAACCCCAACGCAGAGTCTCCCAAGACAGCCGCCCCTCCGGAGTCTCCTCTCTTATCGGCTCCCACGGCGGTGGAAGCTGTACCGACCAGCACCTACTTCACCCCCGTCGCTACCAAACCTCCAGTAAGTCCCGTAGAGCCCGTGAACAAGCTCCAGGCTGTGTTCCCGAGGGACGACCCCTTCGCAAGCGCCCTGATCACCAGCGAGCTGGATAAGCGCTATGACGCATGGCTTCCCTCAGAAGACACCAGGAAAGTGCTGATATCGGTGGCCACGCAGCAGATCAGTCCTGTCCAGATAGACAGAGAGCAGCTGGCCATGCCCGGACTCAAGTTTGACAACCTACAGGGCGATGCGGTGAAAGATCTCATGCAGCGTTTTTTGGGTGACCAGGCAGCTATGAAGAGACAGGTTCTCTCGGCCAGCTCAGTGGAGCAGAACTTCCTGGGTCTCAAGCGGCTAATAAGCACTAAGAACTGGAGGGCGGCCGTGGACCTGACGGGCAGACTGCTGACGGCTCACGGCCAGGGATACGGCAAGAGCGGCCAGCCCACCAACCACACCACTGACTCCCTACAGCTGTGGTTTGTCCGTCTCTCTCTACTGGCAAAGCTCAACCTTTTCCAGAACGCAGAGCTGGAGTTGGAGCCTTTCGGGAATCTGGATCATCCAAATCTCTACTATGAATATTATCCCACCGCTTATCCGGGAAGGAGAGGCTCGATGGTGCCCTTCTCCATGCGCGTCCTGCACGCCGAGCTCCCTCAGTACCTGCAGAAGCCTCAGGAAACCCTGGACCGTCTCCACAGAATAAAGAGCGTCTGTCAGAAGATCCTGAGTAACCTGCAGGAAGGTTTGGCCGAGGACGGGAGTATGATGAACCTCACACAGGACAACAGACTCGCCTCCATCCAGCTGTGGAGGTCACGTCTGAGCAGGGTGATGTACTCCATGGCCAACTGTCTGCTCATGATGAAGGACTACGTGCTGGCCGTGGAGACGTACCGCTCCATCATCGAGTACGAGCCGGAGCAAAGCGTGCAGCTGCTGAGTGGAATGGGTCGCATTTTCCTGCAGATCGGAGACATCAGGACTGCTGAGAAGTATTTTCAGGACGTGGAGAAAGCCTGTCAGTCAAAGGGAAAAACACCTAATGAAGACACGTCCGTGCTGATGAACAGGGCTTTTGTTCACCTGAGCCAGAATAACTATGCAGACGCGCACACGTGTTTCTCCAGCGTCTTGAAGCTCGATCCCAAGAACCCGGTGGCAAACAACAACGCAGCCGTGTGCCTGCTGTACTTGGGGAGGCTGAAGGAGTCCCTGGGCCAGCTGGAGAGCCTGGTGCACAAGGACCCGGCGCTCTACCTCCACGAGAGCGTGCTCTTCAACCTCACCACCATGTACGAGCTGGAGTCGTCACGCAGCACGCAGAAGAAGCAGGCTCTGCTGGAGGCCGCCGCCTGTCGGGAGGGAGACAGCTTCAACGTCCAGTGCCTCAAGCTGGTATGAGACGCCGCCGTCCCACACGCAGGCCGTGCTCGAAAACACTGACGCTTTTACACCTTCCACCGTGTTCAGACGGGACCAAAGTTAACTTGATAACGCAACGATGTTTGGAAAAAGGGTTAAGGTTACCTACGTTTCAAGAATCGAGagaaatgcttttaaacacattaaatgattgttttccAAGAGTCTAAGCTAATTGtaactgtactgtatatttctGAAGAAGAGAAAAGGAAATCTTGgtaataaatgtgtgaaaacCTGA

Function

symbol description
trappc12 Predicted to be part of TRAPP complex. Predicted to be active in Golgi apparatus. Orthologous to human TRAPPC12 (trafficking protein particle complex subunit 12).

NR:

description
PREDICTED: trafficking protein particle complex subunit 12 isoform X1

GO: NA

KEGG:

id description
K20309 TRAPPC12; trafficking protein particle complex subunit 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263143.1 True 2656 mRNA 0.54 13 18373990 18389654

Neighbor

gene id symbol gene type direction distance location
psen1 psen1,LOC107684238,LOC107753355,LOC107687832,LOC107723284 coding downstream 18883 18347425 ~ 18355107 (-)
paplna papln,paplna coding downstream 32054 18313681 ~ 18341936 (-)
aqr aqr coding downstream 62869 18282076 ~ 18311121 (-)
LOC122361452 gjd2,LOC107752716,LOC107565221,LOC107687856 coding downstream 97864 18270871 ~ 18276126 (-)
fosaa fosaa,fos,LOC107723273,LOC107702235,LOC108423428,LOC107735358 coding downstream 415395 17952048 ~ 17958595 (-)
ccr6b LOC107558470,LOC107753366,LOC107687955,LOC107758715,LOC107687848,LOC107589789 coding upstream 209571 18599225 ~ 18602734 (-)
atp6v1c2 LOC107687954,LOC107753364,LOC107558472,LOC107687850,LOC107589777,LOC107758708 coding upstream 215487 18605141 ~ 18616059 (-)
exd2 LOC107687943,LOC107753346,LOC107758720,LOC107687840 coding upstream 284472 18674126 ~ 18684463 (-)
numb numb,LOC107687942,LOC107753345 coding upstream 296373 18686027 ~ 18726828 (-)
LOC122362202 galnt16,LOC107707671,LOC107687852 coding upstream 404935 18794589 ~ 18815103 (-)
G122081 NA non-coding downstream 4116 18369384 ~ 18369874 (-)
G122079 NA non-coding downstream 14882 18358742 ~ 18359108 (-)
G122019 NA non-coding downstream 150576 18223122 ~ 18223414 (-)
G121986 NA non-coding downstream 161574 18173717 ~ 18212416 (-)
G122013 NA non-coding downstream 165608 18202054 ~ 18208382 (-)
G122104 NA non-coding upstream 31960 18421614 ~ 18425369 (-)
G122114 NA non-coding upstream 36659 18426313 ~ 18426728 (-)
G122115 NA non-coding upstream 38301 18427955 ~ 18428405 (-)
G122117 NA non-coding upstream 40360 18430014 ~ 18430246 (-)
G122118 NA non-coding upstream 40967 18430621 ~ 18430876 (-)
LOC122361613 NA other downstream 92418 18279458 ~ 18281572 (-)
LOC122361562 otofb,LOC107752720,LOC107701524,LOC107723281,LOC108423539 other downstream 369776 17982051 ~ 18004214 (-)
acyp1 acyp1 other downstream 410009 17962289 ~ 17963981 (-)
LOC122362005 crim1,LOC107582940,LOC107679775,LOC107662656 other downstream 2422552 15829484 ~ 15951438 (-)
LOC122362003 LOC107664362,LOC107560152,LOC107752022,LOC107658150 other downstream 2606975 15760343 ~ 15767015 (-)
LOC122361943 NA other upstream 241603 18631257 ~ 18644992 (-)
G122247 NA other upstream 397228 18786882 ~ 18790880 (-)
LOC122362226 vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939,LOC107758712 other upstream 430009 18819663 ~ 18836620 (-)
ralgapa2 ralgapa2,LOC107687934 other upstream 757677 19147331 ~ 19282456 (-)
LOC122362030 cldn20,tfb1m,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299,LOC108269830,LOC107680107,LOC107728964,LOC107675319 other upstream 1434805 19824459 ~ 20053139 (-)

Expression


Co-expression Network