CI01000001_00001500_00064341 (CDH24)


Basic Information

Item Value
gene id CI01000001_00001500_00064341
gene name CDH24
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 708 ~ 65576 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_00001500_00064341.mRNA
AGTCACATTTTCAGTCTAAAAGACTTTGAAATCCTCAACTACTTCATTTTGGAGAAGTAATGCAAACTAACCGCTAAGCTTCTGTATTTATTATGGAGGACTTCTTTGGAGCAGTCCCAGATTTTAAGTGATTGAAAGTTTTATGAACCTTGGCTAGTCATGCATGTTTCTGTACCCACTCTAAAAATGCTGTGTTAAAAACAACCCAAGTTGGGTTGAAAATGGACAAACCCAACAATTGGGTTAAATGTTTGCCCAATCTGCTGGGTAGTTTTATTTAACCCAACTATTGTTTAAAAATTACTGTATTGTTTGCATAAAATGAACCCAAAGTATGTTGGAAATTGACATTTATTAATAAGTTTAATAAATGAATAACCATTTATTAAATTGCTTATTAATAAATATTCACCTTTTGGTTATTATTGTTGCCTCTAGTAATTATGTTTCTGATTTTTAATTTCCAACCTATTTTACATTCATTTTAAGCCAGTCATATAGTAATTCTGAAACAGTAGTTGGGTTAAACAACACTTCCCAGCACGTTGGGCAAACATTTAACCCAACCGCTGGGTTTGTCCATTTTCAACCCAACTTGGGTTGTTTTGAACCCAGCATTTTTTAGAGTGCATGATTCTCTGTAGAGACCCAAACTGTTACCTAATTGAAACTGTGCTAGTTTTCCGGTAATCCCAACAGCAAATCCCAATTACCTTTACTCATGATCAGCACTGATTCTCAACCCCTTTCTCCCTGAACAGGTTTGCCCAATCAGACCCAAACCATGGGAATCACCCTCTGTGTTTAACCTGACCCAAAGAGAGAAATGTAATCCTCAAAAGCGGATAAGATGCTAAATGNNNNNNNNNNAGACCCAAACTGTTACCTAATTGAAACTGTGCTAGTTTTCCGGTAATCCCAACAGCAAATCCCAATTACCTTTACTCATGATCAGCACTGATTCTCATCCCCTTATCTCTTTAAACAGGTTTGCCCAATCAAACCCAAACCATGGGAATCACCCTCTGTGTTTAACCTGACCCAAAGAGAGAAATGTAATCCTCAAAAGCGGATAAGATGCTAAATGACCACTGAGCCTCATGAAGAATAAGGAATTAAGAAGAGGAGATGAATGGAGCAGCCATCCACTCAGCGAGACAGAGCGTGAGTGAAGGTCGATCTTATTGTTCTTTCCCCCGTGGCAAACATTGTGACTAATAACGAAGTGAGGCACGATGAGTGGCCGTATCTGGGCAGCATCGCTCTTCCTGTGCATGTGCTTAGAGCTCGGGGGAAGTAGTGCTCGTCTGAGAAGATGGAAACGTGAGGACCGTTTGCAAACTGCAAGGAAAGACAGTCAGGTACAGCGTCTAGACATGGAGGAAGGGCAAAGTGAGATGCCATTTGCCAACACTGCAGGAACACCAAGCTTGAGATTAACAGATAAAAATGACGATAATTTGATGATTTCGCCAAAAAGCAACAAAGAAGATCACGTGCAGATTGAAAAAACTGGATTTGAAATCACACTGACTCCAGTTCTGTTGTCTGGTGCAAGTGTGAACACAGATTTTACTCCACATATTATGAAGAATTTTCATCCCAAATCCAAAGATATACCAGAAATCACAAAGACAACAGCATCACCTCTTAGCCAGAACTCCAAAATATCTAGAATATCTCAAGATGATTTCATTCCCACTGAACTAACTCCTGTAGTAGAGGTAACTGAAACTGAACATGGTGAAAAGGGACCTGACAGATCTACACTGGACGGCCTATCAGACTCCAGCGTGATCCTGCTAAAGCCTCTGTCTGGGTTAAAAAACAGTGGACAGGAAGTGCAAACTATAATGATTGGCAGCCAAGATGCAGAGAGCAGTGGCGATTTCCACAGGACCTTTACTCAACCAAATCTGGATGAGATGCCCTCACAATCCCGCAGCCGGAGAAGCTGGATATGGAACCAGTTTTTTGTGATAGAGGAATATAGTGGACCAGAACCGGTGCTGATTGGACGGGGTCAGAATGAACACGCTGCCTATGGCCAGCTGTTTTTACTTTGCTTGGCTGTGGCATCTGAAGAGCGACTCCTCCTCTGCCTCTCACTGTCACACATACATCCTCTCTCTCTCAGACTACAAATGGCTTCAGAGTGCACTAAAGAAAAGCACTCAGCGTACCTCAGAGCTCTTATTATGATCAAAAGCCTTCATGCCTCTCAAATTTTGAACCAGCCAGTGGATGAAGCAGACAAAGGCAGAATATTAGCTGTCGGAAAGGCTTCCATTAGAGTGGAAGATGGATGGATAAACATGACACTTCATTCGAGTGTGGACAGGGGTGATGGCCGAACGAAATACATTTTAAAAGGAGAAGGGGCCGGTTCAGTGTTCGTCATTGACAGCAGGACGGGGAATATCCACGTCACCAAGCCCCTCGACCGCGAGGAGAAGGACCAGTACCGCCTTATCGCCACGGCAACAGACCGACAGACCGGCCGAGCCCTGGAGCCATCCTCCCAGTTCATCATCCGCGTGCAAGACATCAACGATAACCCACCTGTGTTCCAGGGCGGCCCGTACAGCGCCACCGTGCCTGAGATGGCCAACATCGGCACATCGGTTATTCAAGTGACAGCCACAGATGCTGATGACCCAACCTATGGGAGCAGTGCCAAACTGGTGTATTCAGTGATTCAAGGCCAGCAGTACTTCACCGTGGACCCGCAGTCAGGTATAGTGCGCACGGCGGTCCCAGATATGGACAGAGAAGCTCAGGCGCAGTACCAGGTGGTGCTCCAGGCAAGAGACATGGGCGGCCATCAAGGAGGTCTGACAGGGACCACCACTCTCACTGTGCACCTCAGTGACGTCAATGACAACCCACCGCGCTTCACTCAAATGATCCGCTCTATAGGATCCGACAGTGATCACAGAGTGAAGTCACTGAGCATCTTAACCTTATATCCTGCGTGTCTCTTGGGATACTGTGCTTTATTTCCAGGTCTGGCCTGTGTGTTACTGACGTTGTGTCCTGGTGTGTGGATTGAGTCCCGACTCTCAGCAGGAGCTGATTCACAGTGTTGTGAAAAGAGAGATATGAAAGTGTGGTTTGGTGTTGTGGTGGTGGGAAGCTTCTGTGTACGTGTGGACGAAATATTTGATGATTTCCATGGAGATATGATGAGTACGGTATGTGCTGTGTGTGTGAGATATCAAAGTTTGAGAGAGACTCACGCCATCAAACGATTACGGTATATAGTGCTTATCATAATTATAAAGTGGATTATGGTGCTGATGAGGCTTGTGACTATTATCACCGTGCCAGAGATAACGATAATCTGTGTTACGTTTCTTTCAGAGGGCTTCGGCCTGTCTGTAGAGTGCCACGGCTTCAATCCGCCTTCCCTACGGATTCTCTCTTCAAAATCCACGCGTTTAATATTTCATTTAAAGTTCAGAGCATTCTGCATCAGTATGTGGTCGTTTTCCGTGTCTGAGTTGGCCGTTCCCGGGGTGGAGATCGGTCGTCTCTCAGCAACAGATGCAGACCTGGGTGAAAACGCACGGATGGACTTTACGATCGTGGACGGAGAGGCAGGGGACACATTCAACATAACTGGATTGAACCAAGAGGCAGTGATTTTGTTAAACAAGGCTGTGGACTATGAGAGGCGAAGCACCTACTCTCTGGCAGTGGAGGTGCAAAACCCAAACGTCGACTCGCGGTTCCTCAGACGAGGTCCGTTTAAGGACCGGGCTATGGTGCGCATCACGGTTCTGAATGCAGACGAGCCGCCGAGGTTCTCCCGTTCTCGGTACCGACTGGATGTGTCGGAAAACTGTCCTCCGGCATGTGTGGTGGGGAGAGTAGCCGCCGTGGACCCGGATACAGGCCTCAGTAACAACATAAAGTACTCAATTGATCCCGAGTCAGACCCTGAGGCGCTGTTCCGTATCGCTTCTGACAATGGTCTCATCACCACGGCGATGGAATTGGATCGGGAACAGGAGCAATGGCATAACATTACTGTCATCGCCACACAGAGAGACAGCCCCAACCAAGTTACCAGAGTAGCAGTTGCCATAGAGACACTGGACCTCAATGACAACGCCCCCGAGCTGGATCGACAATACAACACCGCCGTGTGTGACTCCAGCGCTGCAGGACAGGTGGTGCAGGTGCTTCGAGCAATAGATAAAGACCAAAGCAGCTCCAACTCTCCCATCCACTTCAGTATTCCCGCAGAGTCCAGCAGTGCACTCAACTTCTCCATCAGAGAGCGAGGAGACCACACGGCGAGTTTGGTGCTTTTGTCATCCCTGAAGGCTCTTCCTCGCTCTTCCTCTTTACCTGCTCTAAAAATACCCATAATGCTCCGTGACGGTGTGTCAGACCTCAGCAGCACAGGAACGATTACCGTTACGGTGTGTCCGTGCCAAAACGGAGGCATGTGGGCAGATGAACAAAAACAACAAACGGACGAGAAGGATAAACCATCTGTGCCGGACTGGGAGAGGCAAGCGGTGTGTTTGCCTTTACCGTCAAACTCCTCCCTGCTGGGAATCAGCTCGGCCGCCATGTTGGCGATCCTGGCCTGTGCATCAACTCTTCTGGTGGTAGCTGCACTTTCGCTATCGTTGCGAAGGCAGAAACGGGACACTCAGTCTCCTGTGGAGGATGATGAGATCAGGGAGAACATCATCACGTATGATGACGAGGGAGGCGGGGAGGCGGACACGGCCGCTTTCGATATCGCGACCCTGAAGAGCGCCCCCCAGAGCATGCGGAGGGCACAACGCCTTCGAGACAGCAAGAATATGTATTCTCAGGATAACCTGGACAGCGTCAGAACCTTCAGCTGGAGTCAGAGTTTGGGTTTGGACCCACGCCGTCCCGTCTCTGCACCACTCTACGGACGGTACTGCTACAGCATCCAGACCCTTCCAGCTCCGAGAAACAGACTCGGCCCGTTAAACTCCAGGCTGGACCTCGCCAAACTGGCATATGTTCTCCCCGGCAGCCAAGGCCAGTCCGGCGGCCCTTTAGAATCCGGTTCCGTGTTTATTGACAAAAGCAGGGATGGATCAGAACATAAAGGAGCACATGGATCCACCGACAGCATTCCGAAAGAGAGCGAGACAGGAAGTGAGGTCATCTCTGAGAGTCACACACTCAGCCAGGATCAGGGCTCTAGTCAGAGCGGTTCCTGCTCGGAGGCTTCCAGCTCTTCAGTGGGCCATAAACCTGAGTCGTCCCCTCACTGTTTGACAACACGAGCCTCCATTTCCACCATCACCACGGATGACTCCACCCCCGCCTCGGCTTTGGACAAGAATGGAGACGTTACGCCTATCAGCACCAGCCAGAGCACAGCCAGCCTCGTCACGACGGAGATGCCGTTCAGAACGATGGAAGGTACTCTGCTGAGGGGCGGCGGAGGGATACCTTTGCCCGGGACGACGCTTCTCTACCCAGAAGCTGTTGGACTAATGGGCTTGTACGGGGTGGGCGGGCAGAACTATGTGCCACACCTAGTGATGCCCCTCCCAGGAGGGGCGGGGCTGTATGAAAGGGAGTGGGGCTTGGGGAATGGGAAGGTTGGACAAGCAAACTCAGAAAAGGCAAGCGGCGATTCGTTGACTAACAGAATGGGCGACTTCCTGCAACATCGGCTAGCCCTGGTGACCTTTGACCCCATGCAGCCGCCATACGACTCGCTGCAGACGTACGGATTGGAGGGGGGCGGCTCTGAGGCGACGTCTCTCAGCTCGCTCGAAAGTGAGGCCGAAAAAGATACAGAGGGACAGAAAGACAGATTTGAGGAATGGGGACCCAAGTTTGACAGGCTGCTTGATATTTTCAGGGAACGAGCGAAGGAAAAAGAGGATAACAGAAAGCACGAGGGTGAATTTTTAAATGAAGAACACGAGGAAATGAACAAGACAGAAACGAGCAAAGAGGACAAAACAACTGAATCGAACGAGACACGGCGGGTCGAGGAGGAAAACCTAGAAGAAATGGAACGAACGCAAAACAGAAAGAGACACTAAAGAGGAAATGGGAACAAAGAGGGAGGATGTGATGTCACATCGTGAGCGTTCAAAAGCAATAAGTGCTGAAAGGAGCCAATGAGCACAATCCGGACAAAGGGAATTTTATATGGACCTGCCAAAAACCAGTATGTCAGTGTTTTAGAGGAGCAGACGGTCTTATGTAAGTCACTCGCTCAGTTTCACACGCGTCCAGCCACACACGCAGGGCTTGAGTTGTAAAATACAAGCTCATCTTTATATTGCTAAATCTTTTATTTATTTCCTGGTTTAAATCTCAGATTTTCATTGTGGTTTCAGACTTTTATACACCGCATTAACAAGTGTTTTTCTGCTCTCGCATTGTGAAAAAGACAGCAGACACAACGCTTTTACAGTCTGATGACTTAATTTATTCAACAATATCTGATTATGTATCAAATTATTTCTCTATGTTAATTTAGTGTGCTATTATTTATATACTGTTGTAGTATTTATTAATAGTTTGAATTAGCTTGTATTTTTATATTTTTAGTTTTTTTATTTCATTTTTTTAGCTTAAGTTTGAACTTTTCAGATTTAGTTTGTCATTTTAGTACTTCAGCTTAAATCAACTTAAATATATTTCAGTTATTTGCCTGAATAAGTAACCTTTCTAAGTTTTTTATCTAATATTTATATTTTATTTTTTTATTTTTTTTAAGTTTTAGTTAACAATAGCAACACTGAATTACACCTGGAATCTCATTTCTCTCCAACAAGAGAGCACTTTAAAGCTTTTCCTCCCCTTTTCTTCTTCTGATAACTATTAAA

Function

symbol description
cdh24 Enables several functions, including alpha-catenin binding activity; beta-catenin binding activity; and delta-catenin binding activity. Acts upstream of or within cell-cell adhesion. Located in cell-cell junction.

GO: NA

KEGG:

id description
K06814 CDH24; cadherin-like 24

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_00001500_00064341.mRNA True 6848 mRNA 0.47 19 708 65576

Neighbor

gene id symbol gene type direction distance location
CI01000001_00105105_00108304 NA coding upstream 38679 104255 ~ 109844 (-)
CI01000001_00113458_00118362 NA coding upstream 46353 111929 ~ 118447 (-)
CI01000001_00124107_00131285 ELOVL4B coding upstream 57483 122814 ~ 131380 (-)
CI01000001_00192545_00195828 FAM46A.L, FAM46AB, FAM46A, FAM46AA coding upstream 126355 191931 ~ 196831 (-)
CI01000001_00218182_00220017 NA coding upstream 152081 217657 ~ 220116 (-)
G12838 NA non-coding upstream 17785 83361 ~ 83672 (-)
G12830 NA non-coding upstream 24108 89684 ~ 92687 (-)
G12841 NA non-coding upstream 28208 93784 ~ 94086 (-)
G12842 NA non-coding upstream 28545 94121 ~ 94576 (-)
G12844 NA non-coding upstream 31322 96898 ~ 97198 (-)
CI01000001_00238241_00249437 NA other upstream 180429 238241 ~ 249437 (-)
CI01000001_00362143_00378213 NA other upstream 301666 361614 ~ 378213 (-)
G14104 NA other upstream 1698093 1763669 ~ 1771468 (-)
G14219 NA other upstream 1928634 1994210 ~ 1994898 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021938 cdh24a coding NC_007134.7 CM002907.2 40604951 ~ 40744851 (+)