LOC122362009 (crim1,LOC107679775,LOC107662656,LOC106611167)


Basic Information

Item Value
gene id LOC122362009
gene name crim1,LOC107679775,LOC107662656,LOC106611167
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 16118122 ~ 16207614 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263248.1
TGGCGGTCTCACCGATATCGTGCGTAAACACTCCTgctgtgtaaataaaacatagttTGGATGTTAGGAAACAATGTACGGGCAAAGCAAGACACAACAATCcttttttttgaacaaaatcGTCCCGAAGGTGCGCGGCCACGCAAACTCGAGATTCTTTCAAAGTTATGCGGGCCCCACATTCCACACGTGCACCTTCACCAGCGGGAACTATATCTCAGGCTCCCTGCGTTTGAGCGTGTCGTGTTACCAGCATTTCCTGTGTCTCATATCTGGAACGAACGAACTCTCCAATGGAGCAAAGTAATGCGAGATGGGAGTGGTTCCGTTATGAGGTCACGGCGAGGGACTGAGCTGAACGCTCGGCAGCGAGCGCGAGCGCTAGACATGAGACGGACGCGGTAGCTGGAAACGTTTATTCGCACGGCTGAATGAATCTCTGCTGGCAGCAACAGAAAAGAATCAAATAGCAGGACCGCGTTCGCTTCGACGGGGAACTGCTGAAAAACATCGCGCGTTGGCGTTAGAGACGCAGGACAGGCTCGCGCACGAAAGACTCCCAAGGAAGAGGCGCGTGAGGAAAGTTTTCCTACGCGAAAACAAACTGGACGGAACAGCGCAGAAATCGTGACGCACGAGCCATGCACTGGTTGTACAGCGTGGGATAGTTCTTCTGGTGCCGTTCGCTTGAAGGGGATGCCTTTTCGGTGGCTTTCTTCAACAAAAGTTTGACGCCAGGAACGCCGTATCGTTCTGTTCGACAAGAAAACGCTTCTTTCCGAACGGAACATTTCTCGCTCGTCAAGAGTCGTTATTCGTTGCTTTGGCCGGAGGATCCGTTCCGCCGTCGTGTAGTTTTTTTGGGGGACAGGGGTGGGTTGGATATctatatttttcacttttcctTCACGGCCTCCTCCAGGATGTATCTTCTTATGAAATGCATGCTGATTTTCCAACTTGTGGTGTTGATCGCGAAGAACGGTCGGGCGCTCATTTGTTTGCCCTGTGATAAATCCAAATGCGAGGAGCCCAAGCACTGCACGGGCTCCGTGGTGTTGGGGATCTGCGGCTGCTGCTCGGTTTGTGCCAAGCAGAAGAACGAGAGCTGCGGAGGCGTTTACGGTCTGTACGGGACCTGCGACCGCGGACTCCGGTGCGTGATCAGACCCCCGTTAAACGGCGGTTCCATCACGCAGTACGAGGTTGGAGTTTGTGAAGATGAAAACTGGGATGACGACCAGCTCTTGGGCTTTGAGCCATGCAATGAAAACCTGGTTACGGGCTGTAACATCATTGATGGGAAGTGTGAATGTGACAGTGTACGAACATGCAACAACCCATTTGAGTTTGGTAGCCAGGAAGCCTGTCAGACAGCCCTGCAGAAGATTGAAGagGAAAGGCCAGACTGTTCCAAGGCGAGATGTGAGGTGCAGTTTTCTCCACGCTGCCCAGAAGACTCTATATTGATCGAGGGCTATGCTCCACCAGGTGAATGTTGCCCCCTGCCCAGCCGCTGCGTGTGTAGCCCAGCTGGGTGTCTGAGGAAAGTTTGCCAGCCCGGGCACCTCAACATCCTGGTTTCCAAGAGCTCAGGCAAACCTGGCGAGTGTTGTGACCTCTACGAATGCAAACCAGtgTTCAGTGTAGACTGCAGCACAGTAGAGTGTCCACCGGTGAAGCCTGTCCAGTGTCCGGCAGACAGCTATGAGACTCAGGTCAGACTGACAGCAGATGGCTGCTGCACCCTTCCTACCAGATGCGAGTGTTTGCCTGGCCTCTGCACCTTCCCACAGTGCTCAGCGGGGACTTCCCCACAGGTCGTGTCCCGTGGCGATGGAACACCTGGGAGGTGCTGCGATGTGTTCGAGTGTGTCAACGAGACAAAGCCGGCCTGCACTTTCAACGGAGTGGAGTACCATGACGGGGACATGTTCAGGATGGACGCCTGCCGCTTCTGCCGTTGTCAGGGTGGGGTGTCCGTGTGCTTCACCGCCCAGTGCGGCGTCCTCCACTGCGAGCGCTACTACGTCCCTGACGGAGAGTGTTGTCCTGTCTGCGAAGACCCCATCTACCCAGTGCTCAATTTAGCCGGCTGCTATGTGAATGGGCAGATCCTGGCTCACGGAGACCACTGGCGTGAGGACGACTGTACCTTCTGCCAGTGTGTGAGTGGAGAGGCCCGCTGTGTAGCAGCTGCCTGCTGCCACAGCTGTCTCAATCCTGTCACTGTGCCCGGAGAGTGCTGTCCTGTGTGTGAGGTACTAAGCAGTACAGAGTCAACAGCGCTAACCGAGTGTCCCATTCCTCATTTACAGTTTCAGATAGGTGTTCACAGCGTGTACTTTGACAGATCTGAGGACAGCCCCACAGGAGACTTCTACCTGATAGTCAAAGCGAGCCCCACCTACATCACAATGGCGCCCCCCTGCCTGCGGCTCTCTGGACAACTGCACGCTGGGAGGGCAGAGCTGCCCGTTCGGCTTCCGGCTGGACTCCAGCGGCTGCAGGACGTGCAGCTGCAAGACGTAAGAGAGCTGAGACGTCACTGGAGAAGTAGCTTCATCTTCCTCAGGGCCATACCGCGCGGCTCTGCGAATAAACACTGCTGCTCCacatctgcaaaacaaaaactgctCCAATTACGCAGGCGACTTTCTGAGCCACCCAGGCCAAACTTTGTGGAGCTGTGCAGTCGGCAGGTTAAAGAGACATCTGTGACGAATGGAGacgagaaagagaaggaaagcgACGACTACTGA

Function

symbol description
crim1 Predicted to enable insulin-like growth factor binding activity and serine-type endopeptidase inhibitor activity. Acts upstream of or within blood vessel development; notochord morphogenesis; and somitogenesis. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axis; intermediate cell mass of mesoderm; notochord; otic vesicle; and posterior segment eye. Used to study cataract and microphthalmia. Orthologous to human CRIM1 (cysteine rich transmembrane BMP regulator 1).

NR:

description
PREDICTED: cysteine-rich motor neuron 1 protein isoform X1

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0001558 regulation of cell growth biological_process
GO:0001568 blood vessel development biological_process
GO:0005576 extracellular region cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005520 insulin-like growth factor binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263248.1 True 2762 mRNA 0.55 11 16118122 16207614

Neighbor

gene id symbol gene type direction distance location
LOC122362058 crim1,LOC107679775,LOC107662656,LOC107582940 coding downstream 117411 15952582 ~ 16000711 (-)
slc24a4a slc24a4a,LOC107679778,LOC107730209,LOC107662654,LOC107602265,LOC107582941 coding downstream 227833 15858724 ~ 15890289 (-)
LOC122361840 c17h14orf159,LOC107730207,LOC107679776 coding downstream 259438 15849465 ~ 15858684 (-)
rps6ka5 rps6ka5,LOC107582903,LOC107730213,LOC107741860,LOC107679795,LOC107600856,LOC107666260 coding downstream 612191 15483111 ~ 15505931 (-)
zfp36l1a zfp36l1a,LOC107752727,LOC107577075,LOC107679798,LOC107666263,LOC107600858,LOC107741857 coding downstream 899952 15212872 ~ 15218170 (-)
gpr132a LOC107679764,LOC107752700,LOC107569010,LOC107732878,LOC107662643 coding upstream 230616 16438230 ~ 16440346 (-)
prph2la zmp:0000000545,LOC107679754,LOC107569015,LOC107758557,LOC107662597,LOC108428636 coding upstream 259019 16466633 ~ 16469479 (-)
c17h14orf180 si:dkey-206p8.1,LOC107679820,LOC107758561,LOC107732868,LOC107662626,LOC103039526,LOC108428638 coding upstream 285058 16492672 ~ 16513359 (-)
LOC122361412 LOC107751298,LOC107677683 coding upstream 654783 16862397 ~ 16870032 (-)
ttc8 ttc8 coding upstream 694269 16901883 ~ 16912407 (-)
G121450 NA non-coding downstream 397799 15713410 ~ 15720323 (-)
G121427 NA non-coding downstream 439913 15601266 ~ 15678209 (-)
G121343 cdan1 non-coding downstream 600040 15516936 ~ 15518082 (-)
G121326 NA non-coding downstream 702969 15414869 ~ 15415153 (-)
G121324 NA non-coding downstream 705419 15412465 ~ 15412703 (-)
G121507 NA non-coding upstream 78508 16286122 ~ 16286403 (-)
G121509 NA non-coding upstream 126429 16334043 ~ 16334439 (-)
G121639 NA non-coding upstream 275033 16482647 ~ 16483969 (-)
G121644 NA non-coding upstream 341641 16549255 ~ 16550184 (-)
G121609 NA non-coding upstream 609992 16817606 ~ 16893398 (-)
LOC122362005 crim1,LOC107582940,LOC107679775,LOC107662656 other downstream 166684 15829484 ~ 15951438 (-)
LOC122362003 LOC107664362,LOC107560152,LOC107752022,LOC107658150 other downstream 351107 15760343 ~ 15767015 (-)
G121456 LOC107660450 other downstream 377636 15738262 ~ 15740486 (-)
G121438 LOC107708961,LOC107664629,LOC107654010,LOC107719547 other downstream 428328 15688891 ~ 15689794 (-)
LOC122361708 LOC107598628,LOC107708961,LOC107654010,LOC107719547,LOC107664629,LOC107557341 other downstream 429682 15683661 ~ 15688440 (-)
acyp1 acyp1 other upstream 1754675 17962289 ~ 17963981 (-)
LOC122361562 otofb,LOC107752720,LOC107701524,LOC107723281,LOC108423539 other upstream 1774437 17982051 ~ 18004214 (-)
LOC122361613 NA other upstream 2071844 18279458 ~ 18281572 (-)
LOC122361943 NA other upstream 2423643 18631257 ~ 18644992 (-)
G122247 NA other upstream 2579268 18786882 ~ 18790880 (-)

Expression


Co-expression Network