LOC122362028


Basic Information

Item Value
gene id LOC122362028
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 18978706 ~ 18981367 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263274.1
CATCTAGTACGTTGAGTTTATAACCAGAGGTCTCCAGCACCGCTTTATTAAAGTAGATCATAATCTAATGAAATAATGTTCATGTTAtgtaatattgatttaatattgaTCGTAAAATCATGTCTTCTAaactgctgttcttcagaaaaatcctacAGCTTCCACTAAGTCTTTGGTTATCTCAGCATCTTTTGTGTCCTGCCCTTCAGAAGATACTTGCATGTTTCCCGGAAGacaaaataagttacatttaacCTGATCTTCAAATTCAGAATGTTTTCTACCTTCATTGTTGAAACGGAGGTTGATTTGAACCAACAAATTTCTGGATTCATTCGCATAGgtcatttgtttgcatttaattgcattgtAATCATGATATAACTTCAGATTGAGAGAAGTTAACTTATATCTGATAATATTGTCAATTATTAGACGTTTCCAAACaactatttatattaaacaaacctcaaaaaggtcaatatatttttaaatgttgcacaGATTCATTACACACTGAGTAATTAGAGcttgaaatatttcactgtGTAATGAATCTATATAATTCATCTATCATGTAGTTTCAGATCCTGAAATGAGTCAATGACAAAACATATAGATCTTTTTCAtgatacaattttatttatttttttagatgtacCTGTGCAGCAATCTTCATGAGCACCACTAGCTGTTCAAAACTAAAACAAGAAATTGTCTTAAGAAGAAAAATAAGCGGCAAAGGATAAAGATAAATCTTACCTTTAccgagagagaaaaagagagcgaTATATTACTTGTCTGTGAATCTCTTCTTCTAATAACGAATCTGTAATTGATCTGCTCCTAATAGCTCCACACCGGGAAATGTCATGTAGTTTTTCAGCTGAGATTCGGTTTTCTTCATAAAGTCACGGGGCTTCGGTTGTGCGCGTCCATGCTCCGCGTGCACGTGAGTGAGAGCACGCTTTCCATccgaataaaaactaaaaactttccttggagatatataaataaataatactaaaaataataataataataaaaaaataatttagaaaatagtGTGATCTTTTCCGGTTATTATTTAGCATATTCCGTGTCTTTtgatgttttagttattttactaGTAGCCtgtagtatattaataataagaagaacaacaaacaaacaaataataaatacatttttaaaaaaaattaaatacatctcTTCTTGGGAGTTTAGTCACGTGACTAGAATGCTTTGCATAAATCCTGCGCGTGCTGTCTATGACGTTTGAAATTAGAATGAACAGAATCTTTCTAAACTCATTCTTTTTGATCGCTTTTGCAACTCTGCTCGTTTGCATTCTGCTCTACTGCAAGTACCAAAATATTTCCTCTGCTCCGCTGCACTCTTAACTCAGTTGATCTAAGAGTCCGATATATTAAGATTGCAAGTCTGTCTGCAAGACTGCGCGATTATCCCGGCTCCAGAAGATTCAGCTGGTtccccaaaacaaaaccatgCTGTTCACTGCCAGTCTGGTGATGTTATGGTGGTACTCCACCTGGGTGAAAGGTAAATCACCGAATACAGTGAATCAGGAGGACACCGAACAGATCACCAGAAAGAAAACCGAGGAACAACTGGAGTGGCATTTCACAGAAGGATCTGAATCTAGTACTACCTCTGCAGGTGACTCTGAGGTGAACAGTGCTCCTGAGACCGTCATTGTCCATGAGACGGAGGATGCACCTGAGACCGTCATCATCCCTCAGAAGGACAGTGCACCTGAGACTGATAGTGCTACTGAGATCGTCATCGCCCCTGAGATGGAGAATGCTCCTGAGGCTGACACTGTCCCTGAGACAAACGGTGGTCCAGAAAACATCATAGTCCATAATATGGACAGTGCGCCTGAGACTGTCATCTCCACTGAGATGGAGAGTGCTCCTGAGGCTGACACTGTCCCAGAGACAAACGGTGGTCCTGAGACCATCAACGTCCCTAAAATGGACCGTGTACCTGAGGCTGACACTGTCCCTGAAGTAGACAGTGTCGCTGAGTCTGTCATCGTCCCTGAGACGGTTATTGTGACCGAGACCGCCATCATCCCTGAGATGGACGGAGCACTTGACACTAACACTGTCCCTGAGATAGACAGTTCACCTGAAACTGTTATTGTCTCTGAGATGGACAGTGAGAAGGCCATCATCCCTGACTTTGTCCTTGAGACTGAAACTGCCTCAGAGATAACACTGCCCTTGAGACTGAATCTGTCTCTGAGACTTTCACTGTCTTTCAGCCTCAAACTGCCTCTGAGCCCAAACTACCTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263274.1 True 2324 mRNA 0.39 2 18978706 18981367

Neighbor

gene id symbol gene type direction distance location
LOC122361746 vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939 coding downstream 40069 18921965 ~ 18938637 (-)
LOC122361744 galnt16,LOC107707671,LOC107687852 coding downstream 61216 18887551 ~ 18917490 (-)
LOC122362022 NA coding downstream 114264 18860972 ~ 18864442 (-)
LOC122362021 NA coding downstream 139466 18837814 ~ 18839240 (-)
LOC122362202 galnt16,LOC107707671,LOC107687852 coding downstream 163603 18794589 ~ 18815103 (-)
LOC122361743 NA coding upstream 134 18981501 ~ 18992880 (-)
nkx2.4a nkx2.4a,nkx2-4,LOC107707661,LOC107688185,LOC107558479,LOC107737279 coding upstream 445346 19426713 ~ 19429509 (-)
nkx2.2a nkx2.2a,nkx2-2,LOC107558480,LOC107707659,LOC107737280,LOC108435751 coding upstream 483641 19465008 ~ 19469172 (-)
foxa2 foxa2,LOC107656870,LOC107558496 coding upstream 612572 19593939 ~ 19596388 (-)
prkd3 prkd3,LOC107657158,LOC108435798,LOC108270251,LOC107736975,LOC107656871 coding upstream 627411 19608778 ~ 19654074 (-)
G122246 NA non-coding downstream 278451 18698844 ~ 18700255 (-)
G122245 NA non-coding downstream 279879 18696502 ~ 18698827 (-)
G122240 LOC107753347,LOC107687945,LOC107558486,LOC107687860,LOC107758716 non-coding downstream 304765 18669928 ~ 18673941 (-)
G122241 NA non-coding downstream 310695 18667372 ~ 18668011 (-)
LOC122361655 odc1,LOC107687839,LOC107687948,LOC107753348,LOC107758719,LOC107558486,LOC107687945,LOC107753347,LOC107758716,LOC107687860 non-coding downstream 311584 18650479 ~ 18667122 (-)
LOC122361748 NA non-coding upstream 34230 19015597 ~ 19020095 (-)
G122270 NA non-coding upstream 39630 19020997 ~ 19022185 (-)
G122274 NA non-coding upstream 45413 19026780 ~ 19066968 (-)
G122334 NA non-coding upstream 157159 19138526 ~ 19138826 (-)
G122343 insm1,insm1b,LOC107558475,LOC107564444,LOC107756196 non-coding upstream 186014 19167381 ~ 19169489 (-)
LOC122362226 vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939,LOC107758712 other downstream 142086 18819663 ~ 18836620 (-)
G122247 NA other downstream 187826 18786882 ~ 18790880 (-)
LOC122361943 NA other downstream 333714 18631257 ~ 18644992 (-)
LOC122361613 NA other downstream 697134 18279458 ~ 18281572 (-)
LOC122361562 otofb,LOC107752720,LOC107701524,LOC107723281,LOC108423539 other downstream 974492 17982051 ~ 18004214 (-)
ralgapa2 ralgapa2,LOC107687934 other upstream 165964 19147331 ~ 19282456 (-)
LOC122362030 cldn20,tfb1m,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299,LOC108269830,LOC107680107,LOC107728964,LOC107675319 other upstream 843092 19824459 ~ 20053139 (-)
LOC122362234 kif26a,kif26ab,LOC107739214,LOC107662598,LOC107732702,LOC107559913,LOC107586892 other upstream 1575356 20556723 ~ 20636159 (-)
aspg aspg,LOC107586863,LOC107739215,LOC107732472,LOC107662599 other upstream 1776349 20757716 ~ 20770229 (-)
nenf nenf,LOC107739254,LOC107664444,LOC107732830,LOC107662615,LOC107586886 other upstream 1933834 20915201 ~ 20916639 (-)

Expression


Co-expression Network