CI01000001_00192545_00195828 (FAM46A.L, FAM46AB, FAM46A, FAM46AA)


Basic Information

Item Value
gene id CI01000001_00192545_00195828
gene name FAM46A.L, FAM46AB, FAM46A, FAM46AA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 191931 ~ 196831 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_00192545_00195828.mRNA
AATTTTAATTGACTCATTTATTATGGCTATATCACATATTCTTTCACACTAATGCCTTTTAGAAAATATACAATAAGTCAAATACCAAATATAGTTTATTCTTTGGTCTATAGAAACAGAATAAATAAATAAATAAATAAAAAATATAAATAAAAAACTTCAGCAAAAATTATTAAGTTATACATTATATAAATTCCTGTATTGCTTTAACAGGTCGTAAATGGGTATAACTATATAATATTACTGTAGGTGAGGAGCGCGTGTCTGGATTGGTGTGCGCAGCTGTCACTCAAATTCGCCGTCACTCCTGCTTTAGTTTACGGGTTAATCTCTATGCATCCTCACTGCATCTGAGATGACATGAGCAACCAGCAGTTTACACAGAACAGCTGACAATGTGATCATACAGGTAGGTAATCCGTTCAAACATAGTATTGATTGTGCGCATCTATATTAATTCAGTGCGCACTTTATGCTTTCATAGGACTTGAAACTTATTGGTTGATTTTTTTTATACTTTTATTATTTTTTTACAGAATAAAACAACATGTAAAGGCTCGAAGCGTCCAGGTTTCACTTTAACTGATGAGGAGAGGGACGGGGTCTTTTGCTATTTGATATTCGTGTTATTGGAAAGGCGTGCCCTTTTTTATCCGACCTGAAAACTCATCGCAATCATGCAGCAATCGTTCTGATTCTCACGGCCCCCCGAGAGCCGTGAGAACCCGCGTCCACCGCCTTCGCCACGAACTTCAGCGCTGTGCGCAAACGGGACATCTGGTGAGCTTTTACGCACAGTGGTGAGGCGCAGCAGCGGCGCGCTGCATGCAACACGAATGCACAGACGTGCATATAAACTCTCACGCGACTGAAAAAGACTCTTTTCTAGAATTATAACATTTCAACCGCTCCTCGTTTCGTTGGACATGGCCAAAGCGATATAAAATTACAGACCCGATTCTAGGACTAGCCTAATTAACAAACCGATCTCCAATCACTCGCCATGGAAGAGAATCTGAGTAACTTGAGCGTGCTGAACTGGGAGCAGGTGAAGCGTCTGGATGTCATCCTTACCGAATCCATCCCTATTCACGGCAAATGGAACTTCCCCACTTTGGAGATGAAACCTCGGGATATCGTCAAAGCGGTGCGGTGTCGCATGGAAGAGCGCAAGATCCACGTCCGGGAGGTCCGGTTGAACGGGTCCGCGGCCAGTCACGTTCTCCACGAGGACAGCGGTTTGGGCTACAAGGACCTGGACCTCATATTTTGCGCGGATCTGAAGGGAGAAGTGGCGTTTCAGACCGTAAAGGATATCGTACTCGACTCCCTCCTGGATTTTCTGCCTGAGGGAGTGAATAAAGAGAAAATTACTCCAGTGACATTAAAGGAGGCTTACGTGCAGAAGATGGTGAAAGTGTGCAATGATTCAGACCGTTGGAGTCTAATCTCGCTCTCCAACAACAGTGGGAAGAACGTCGAATTGAAGTTCATGGATTCCCTGCGGAGACAGTTTGAATTCAGCGTTGACTCTTTCCAGATTCGCCTGGACTCGCTCCTGCTCTTCTACGAGTGCTCTGAGAACCCAATGGCTGAGACGTTCCACCCCTCCATCGTGGGAGAGAGCGTTTATGGAGACTTCAGCGTAGCCTTGGACCACCTGCAACGGAAACTGATCTGCACACGAAATCCAGAAGAGATCCGGGGCGGCGGCTTGCTGAAGTACTGCCACCTGTTGGTGCGAGGTTTCCGCGCCGCTTCGGAAGCCGAGATGAAGCTTCTCGAGCGCTACATGTGCTCCCGGTTCTTCATCGACTTCTCGGATGTGGCGGAACAAAGGCGCAAGCTCGAGTCCTATCTGCAGAATCACTTTGTGGGACTAGAGGACCGGAAGTACGAGTACCTGACCACCCTACACAGTGTCGTCAATGAAAGCACGGTATGCTTGATGGGACATGAAAGGCGACAGACTCTGAGCCTCATCACCATGTTGGCAGTACGTGTGCTGGCGGAGCAGAATGTGATTCCCAATGTGGCTAACGTCACTTGCTATTACCAGCCTGCGCCGTACATTGCGGACGGCAACTTTAGCAATTACTACATTGCTCAGGTTACCTGGTGTCTTTCTGCAGGCCTAATTATCACACAGCCACCAAATCCAGAGATTATACCTTTGACACATCTGACCTGCATAACCTGGGGGATTAAGACCAGCAGATATAGAGCAGTGAGAGGCAGAAGCACATTTAAGGGAAGTACAACATATACCAAAGATATTCTTGATATTCCTCAAGATTGTGAAGCAACAATACTTGACGTTAGAGCATCTACATGCTGTTGGAACCCCAGTTGAATTATTCCGTAAAGTCTGAATCATCAAAGAGTTCTGATATATGTTAAAGCCTTGTTCCATATACTCCCCTAAGCCCTTGCGGTCCTCCTCAGAGTCTACACTTTGGTGACATAATGCTGCATAATGCTGTCTGGTAGTCGTCCAAAGGTGCGGGCTCGGCAAAACGGGTGCATCAAGGGCACTCATGAGCACCCTTAAGAATCCAAAAATGGGACACCATACAGTTACATGCATGCAATGGCCGTCACAAGTCTGCAGGATTGCAAGTTGGGACAGGGCCTGAGATTGTCACTTGTACTCGTGGATAAATTCGCTGATCATACAGAGATGGACACTTTCCTCCCATACGCTCACTCACATATAATCATATCTCTTATTTTTCTACTGATTCTTCTATTTTTGTACATTGTGATGTTTGTGAAAAGGTCTCGGTTAGGACCTTACTCTAATGCTGTGAAGAGTACTGTTTTCTTTTATGAGTCGAAAGAAAACCCGACCGAGCATTAGTGCAGCAAATTCTCAACAAGCGTTGGTGTAAATTTTCATACTGAGTCTTGGATGCCCACACAAGTGTGAAGGTCTCTGTGTATGTGTGTCTTATCTTCTAAATTAAA

Function

GO:      GO:0044822, GO:0005575, GO:0008150, GO:0030193, GO:0003674, GO:0010468

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_00192545_00195828.mRNA True 2967 mRNA 0.45 3 191931 196831

Neighbor

gene id symbol gene type direction distance location
CI01000001_00124107_00131285 ELOVL4B coding downstream 60551 122814 ~ 131380 (-)
CI01000001_00113458_00118362 NA coding downstream 73484 111929 ~ 118447 (-)
CI01000001_00105105_00108304 NA coding downstream 82087 104255 ~ 109844 (-)
CI01000001_00001500_00064341 CDH24 coding downstream 126355 708 ~ 65576 (-)
CI01000001_00218182_00220017 NA coding upstream 20826 217657 ~ 220116 (-)
CI01000001_00222940_00227735 NA coding upstream 25969 222800 ~ 228007 (-)
CI01000001_00238241_00249437 NA coding upstream 41410 238241 ~ 249437 (-)
CI01000001_00305883_00333574 FYCO1A coding upstream 108660 305491 ~ 333798 (-)
CI01000001_00362143_00378213 NA coding upstream 164783 361614 ~ 378213 (-)
G12868 NA non-coding downstream 6874 184856 ~ 185057 (-)
G12866 NA non-coding downstream 12896 178775 ~ 179035 (-)
G12859 NA non-coding downstream 25771 164953 ~ 166160 (-)
G12856 NA non-coding downstream 37651 153967 ~ 154280 (-)
G12877 NA non-coding upstream 6167 202998 ~ 203217 (-)
G12878 NA non-coding upstream 6661 203492 ~ 203706 (-)
G12880 NA non-coding upstream 12318 209149 ~ 209358 (-)
G12873 NA non-coding upstream 14478 211309 ~ 212246 (-)
G12920 NA non-coding upstream 81213 278044 ~ 278289 (-)
G14104 NA other upstream 1566838 1763669 ~ 1771468 (-)
G14219 NA other upstream 1797379 1994210 ~ 1994898 (-)
G14228 NA other upstream 1859143 2055974 ~ 2056478 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021931 tent5ab coding NC_007134.7 CM002907.2 40275400 ~ 40286059 (+)