CI01000001_00218182_00220017


Basic Information

Item Value
gene id CI01000001_00218182_00220017
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 217657 ~ 220116 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_00218182_00220017.mRNA
AGAAAGGATTTAACAGACGTTAGTTATGAATGATCCACTTGAACTTTTATTTTATCTTTTAATTCATCCTTCACAATCTTTGTTTTTTTTCCTGACAGGATGGCTCTTGCAAACAACCAATACAAAAGCCTCTGCACCGTCGGCCGTTTCCCACAGGTCCAACTGCAGGCAGACGACAGCTGGAAAGGTGCATGCTGCGCTCCGGTTTACACCAACCCCGATGTTAACCCTTGTGCTAAGAGTTGCATAAATCCGTGTGTAAACCCATGCGCTAATGTTCATGTAAACCCATGCATAAAAACTTGTGTTAACCCATGCGTCAACCCTTGCATTAACCCTTGCACTACTCCACACACTAATCCTTGCAGCGTTGTCACTCCATGCCATGATTATGAGACTAAGGAAGTTGTCATCAAAGAGTGCATGGATGATTGCACAAAAGCTCTCCTCCGGGTGACTAAAGTCGATCTTCTCAAGTGCAGGACTGGACCGAATCGTAAGGAGCATCACACACATTGTTTCCCTGATGATCACCTCATCGTCCGCAGGGGACAGTGTTTCTATATTTGGGTTGATCTGTGCCGTCCTTTCAATCCTAGTTGTGACAAACTTCACCTGGAGCTGAAACTAGGTCATGTCCCATCCATCCGGGACGGCACTTATGTGATCGTTCAAATTGTGGAAGAATTCAAGAAAGACTGCTGGGGGGCAAAGATTGTCGAAAAGTGTCAAAACCGAATCAAATTGTGTGTGCACTCACTTCCGACTGCTTGTGTTGGACGATACCAACTCAGTGTCGTGACTCACTGTCAAGGAGGAAGATTCACTCTACCATATGTTCCTGACAATGACATTTACATGCTGTTCAACCCCTGGTGTAAAGATGACTGTGTGTACCTGAGTGAAGAGGAGGAGAGAGTTGAGTATGTGCTGAATGACATGGGCAGAATCTACTATGGAACTAAACAGCAGATTGGCTGCAGAACATGGAACTTTGGTCAATTTGAGGAGGGAGTCTTGGCTGCATGCTTATATGTGCTGGAGAAGAGTTATGCCCTTTGCTCAGGATGGGGAAACCCAGTTAACATTTCCAGAGTGTTGTCTGACATGCTCACTCAGGTGCATGGATTCACCAACATTGTGGTCAAACAGCACTGTTAAACCAATCAAATAACCAAACGAGAAGAAATTTTCATTGGAAAAGAAAGTGTTGTTGACTAAATGCTTCAGTAAAACTTTCACATGATTTGCAGACTGAATTAACACTGTTTCACTTCATCTACTAAAGACAAATGTTACAGTTTGATTGTGGTCTTCAAACTTGTTCTCCAAATATTGTGATTTTCATCCTGTTGATTAATAATTTCCTATCTTTAAGCAATATATTGGGATAAGGGATTAGTAATTCCTTCTAATGCATATTATGATGATGTCTGAATTAATGAAATACATAAAAGAGCTGAGGTGTCCTTGTCTGCGTTTAAATCAAGTCTAATTATACCTGAGAGATTCAGATTTAGGCTACATCATATTAATCATTATCTAATCAATTACTATTTCCTGGGTTCTTCTTCTCATGCTAATTATGTTAATGAAAACCTTTGAAACACATGTGGTTTTATGATGTTTATGTACTCTTACTCGCTTTGTTAATCTTGTCTATGTGCAGTCTCCGCAATTAATAAA

Function

NR:

description
transglutaminase, skin-type2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_00218182_00220017.mRNA True 1686 mRNA 0.41 6 217657 220116

Neighbor

gene id symbol gene type direction distance location
CI01000001_00192545_00195828 FAM46A.L, FAM46AB, FAM46A, FAM46AA coding downstream 20826 191931 ~ 196831 (-)
CI01000001_00124107_00131285 ELOVL4B coding downstream 86277 122814 ~ 131380 (-)
CI01000001_00113458_00118362 NA coding downstream 99210 111929 ~ 118447 (-)
CI01000001_00105105_00108304 NA coding downstream 107813 104255 ~ 109844 (-)
CI01000001_00001500_00064341 CDH24 coding downstream 152081 708 ~ 65576 (-)
CI01000001_00222940_00227735 NA coding upstream 2684 222800 ~ 228007 (-)
CI01000001_00238241_00249437 NA coding upstream 18125 238241 ~ 249437 (-)
CI01000001_00305883_00333574 FYCO1A coding upstream 85375 305491 ~ 333798 (-)
CI01000001_00362143_00378213 NA coding upstream 141498 361614 ~ 378213 (-)
CI01000001_00445369_00466166 TMCO4 coding upstream 225124 445240 ~ 466897 (-)
G12873 NA non-coding downstream 5411 211309 ~ 212246 (-)
G12880 NA non-coding downstream 8299 209149 ~ 209358 (-)
G12878 NA non-coding downstream 13951 203492 ~ 203706 (-)
G12877 NA non-coding downstream 14440 202998 ~ 203217 (-)
G12868 NA non-coding downstream 32600 184856 ~ 185057 (-)
G12920 NA non-coding upstream 57928 278044 ~ 278289 (-)
G12921 NA non-coding upstream 62439 282555 ~ 282782 (-)
G12933 NA non-coding upstream 115609 335725 ~ 336033 (-)
G12896 NA non-coding upstream 138755 358871 ~ 359739 (-)
G12945 NA non-coding upstream 185215 405331 ~ 406159 (-)
G14104 NA other upstream 1543553 1763669 ~ 1771468 (-)
G14219 NA other upstream 1774094 1994210 ~ 1994898 (-)
G14228 NA other upstream 1835858 2055974 ~ 2056478 (-)

Expression


Co-expression Network