XLOC_006733 (kcns3a)


Basic Information

Item Value
gene id XLOC_006733
gene name kcns3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 32575777 ~ 32577386 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012959
TGCTTAGCCCAACAGTCCCAATTACTCCTTCATGTTCTGGCATCCATCATGGTGTACGGGCAGTTCCTGCACCGCCGAGGCCCCGAGGAGAGCTTCATCAACCTCAACGTCGGTGGTTTTAAGCAGCAAGTGGAACGGGTGGTCCTCCAACGCTTCCCCCACACACGACTGGCCCGGCTGCTCTACTGCAGCTCAGAGGCCGCTATTCTCCAGCTTTGTGATGACTACGCTGCAGCGGACCGAGAGTATTACTTCGACCGCAATCCATGCTTTTTCCGCTACGTGCTGAACTTTTATCATACCGGAAAGATCCACTTGATGGAGGAGCTGTGTGTGTTTAGCTTTAGCCAGGAGTTGGAATACTGGGGTATCAAGGAGCTTCACCTGGACACTTGCTGCAGCAACCGATTTCAGGAACAGAAAGAGAACATGGGAGATCCCGACTGGGGGAATGAGGATGACCCTCAGAACCAGCTGCAGGACAGCTTAGACTCATCCATGGAGGAACTGTCAGCATTTGACAAAGACTTGGAAAAGTTTGAGGGCACCTGGTGCGCAGAAAAACGCAAGGAGCtctggttgcggctggaaaaccCTGGATACTCACGCTCTGCGAAAATTCTGGCGGTGTTTTCGCTGAGTGTTGTACTGATAAGCATCATCGCCATGTGCATCCATAGCATGCCTGAATTCCACCAGAAGGACGCCAATGAGAAAGAGGTGGAGAACCCGGTGTTGGATGTGTTTGAGACTTTTTGCGTTCTCTGGTTCTCCCTCGAATTCATTGTACGATTAGTTGTCACACCGTGCTTGCGCAAATTTATATGCAATGCATTAAACATGATTGACTTTGCTTCTATCGTTCCATTTTATGCCACGCTGGCATTTGAAAAAGTGGATCCTGAGGAAAGCGAGGAGCTTGAGAATGTGGGAAGGGTGGTGCAGATCCTGCGTCTCATGCGTATCTTTCGCATCCTCAAACTTGCCCGCCATTCAGTCGGGTTGCGTTCTCTTGGTGCGACTCTCCGACACAGCTATCACGAGGTCGGACTCCTCATCCTCTTCCTCTCCGTGGGAATCTCCATTTTTTCAGTTCTTATTTATTTTGTGGAGAGGGAGGACCACGAGTCGGAACTGCAGACTATACCGGTGGGCTGGTGGTGGGCGACGATAAGCATGACCACAGTGGGATACGGTGACACGTATCCAGTCACGCTTCCTGGGAAGCTCATCGGCACATTGTGCATCATTTGCGGCCTGCTTGTAGTCGCCCTTCCTATCTCCATCATCTTTAACAAGTTCTCCAAATACTACCAGAGACAGAAAGCCCTGGTGGAGTCTGACCAGCTCCAGACAGAGGACGAAAAACAGCCAGATCTCAGCATGCCTTTTCTTCATATAGCAGACCTCTACAGCCAAAAGATGAACTCTCTGGCGCACAGCGCATCCTCCAGGAGTAGCGAAGGAGACGCCACTGATGCTTCCAGTATTGCTGATGTTGAATTCGTCTGCTCTGCTGGACAGCCAAAAGCCAACAATGTGACGTAAACCTGAAGATGCACAACCTCAAATAAAGGAACAAGAATCTGCAGCACATATCGAGGAAACCA

Function

symbol description
kcns3a Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Orthologous to human KCNS3 (potassium voltage-gated channel modifier subfamily S member 3).

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080723-45 Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Orthologous to human KCNS3 (potassium voltage-gated channel modifier subfamily S member 3).

Ensembl:

ensembl_id ENSDARG00000006891

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012959 True 1610 mRNA 0.51 1 32575777 32577386

Neighbor

gene id symbol gene type direction distance location
XLOC_006731 NA coding downstream 8521 32457931 ~ 32567256 (-)
XLOC_006732 NA coding downstream 80905 32492067 ~ 32494872 (-)
XLOC_006730 NA coding downstream 119784 32069898 ~ 32455993 (-)
XLOC_006729 BX470107.1 coding downstream 512761 32023488 ~ 32063016 (-)
XLOC_006728 NA coding downstream 576765 31983061 ~ 31999012 (-)
XLOC_006734 wdr35 coding upstream 2996 32580382 ~ 32626247 (-)
XLOC_006735 matn3b coding upstream 50058 32627444 ~ 32635885 (-)
XLOC_006736 bend3 coding upstream 64154 32641540 ~ 32648416 (-)
XLOC_006737 pdss2 coding upstream 83158 32660544 ~ 32726178 (-)
XLOC_006738 CU019663.1 coding upstream 216478 32793864 ~ 32807641 (-)
XLOC_006471 BX537274.2 misc downstream 22310872 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 31749552 825904 ~ 826225 (-)
XLOC_006741 NA non-coding upstream 369325 32946711 ~ 32996496 (-)
XLOC_006752 NA non-coding upstream 683745 33261131 ~ 33301170 (-)
XLOC_006757 NA non-coding upstream 875052 33452438 ~ 33463644 (-)
XLOC_006758 NA non-coding upstream 880137 33457523 ~ 33459318 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_07847662_07849170 KCNS3A coding CI01000012 null 7846544 ~ 7849734 (+)